Tan0012894.1 (mRNA) Snake gourd v1

Overview


Name	Tan0012894.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Histone chaperone
Location	LG11: 20299686 .. 20302657 (+)
Sequence length	1111
RNA-Seq Expression	Tan0012894.1
Synteny	Tan0012894.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCGCCAAATTGGGCACTCCATTTCCCTCCAAAATTTCCAGCGGCGGCGATATATAATCGACGAACTCAGTTCTTCGTCTTTTCATTTTGGATCTATCTTCAACTTCATCAGTGCCGGTCATCGGCGATACTTATTCTGGCCAGGTTTGTTCGGTCGTCGATGAGTGACCTCCGAATTAGGGTTAAGATCGATCAATTTGTGGAATCAATTTCAGAGCTCCGTTTCGGTTTCTGGCGATGAGTGCCGTCAACATTACGAACGTCACCGTCTTGGATAATCCTGCCGCGTTTCTGAATCCATTTCAGTTCGAGATCTCATATGAGTGTTTAACTCCGCTTAAAGACGGTAATCTGCTTTCTTTTGTTAGATCGTATTGCATCATCGGTAATCTGTAGCATTAGATTTGGAATGATGGTTTAAACAGTCGATGTTGGGATAATTAGATGTTGGCTTGAATTTCTTCTGTTGGATTCATCAGATTAAACTGGAAATAGGGAAGAGCTTGAGGGATTGCTTCCGGTTTGCTCAAGATTGAGTTGAAAGGAAGATGCAAACCCTAGAATTACATATGTGGGTTGGCCTATAAACTGGATATTTGTGTATGGTTAATGGCTCACACACAATCGTTTTTTTAGTAACATCTTGTGGAAGAGAACTTTATGCCCCTGATTTCATGTATACTATATGGATTTAAAATCCAGTTCAAATCTTGAACCTAACGCCTGTATTCTAATGATGTGCCTTTTCATGCTTAAAGTTAAATCCTGATTTTGATGCTTGAGCCTTAAAAGTTTGTGCAAGAACTTTGTTATTTCTACTAAGCTGTTCTGAGATAATCTTTGAAGGGTATTTGTGTGTATAGCTCACTTTATCTTACGGATTCTGCTTTTAGGGCATTTTAACACCTGTTGTTTATTTCACTAGTTCTTACTCATTGTCTTTGGATTTTTTTTTGTTTGATTTAGAATGATGAATACTAGATATGGATAAATCAACACTAACATTATAAGACTTCAATCTATCATGCCAAGTTCAATCTCTTAATTTGTGTTAATTATGCTCTTTGGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGGGGGGGGGGGGTTGGATTTTTCTTGAGTAGTGATTAAAAATGCTATTTAAACAAAAGATTCCATGCTCAAGCTCTTGCAATATTTTTTTTTTTTGGGATTAATATTGAGAGTCACTCGTCAAGTCTCTTACTAATTTTTTAACCTAGCCTATTTTGTAAATTTCTCAAGCTATTATTAGCTCAATGATGATATATTTTATTTTTTCGTTTTTGACTCAAATAGTACTACGTCCGGAAATCAACTTTAATGACATGTTATCTCTTTGACCATTCTACAGATCTAGAATGGAAACTCACCTATGTTGGATCTGCTGAGGATGAAACCTATGACCAACTTTTGGAGAGCGTGCTAGTTGGACCCGTTAATGTAGGCAATTATCGTTTTGTTCTTCAGGTAATATATGCTGAGTCTTTTACCTCTCTGTAGAGCCAAAATTACATATCAATGTCAACCTAAATATTAACCTATTAACTAGAAGTTTTGAATTTAGTGATAGTTTAACATAGTTTAAAAAGCCTTGAGTTAAAAAATTCAAGTTAATATTTGAGTCCATACATCCTATTAACTAAAGTTTAGAAATTTAGTGATAGATTATCTTTTCTTTCCTTTTTTTTTTTATTTTTTTTTTATTGAACATGTAGAGTTGTAGATATGATCTTTTGTTATCTTGATTGAGGGTATGTGCCTTAACCAATTGAGTTATGCTCAAGTTGGCAGGGATAACTTATTTAAATTATTGTTAGCAACATTTTCTTTGGTTTTTCACAATATATTAGAAGTGAAATTGTCTCACATTGGAAAAGTGCAAAGAAGTGATGGCTCTTGACACTATAAAAGGAGCCTATGACCTTGTTTTCAAAGCATCTCAGTTATAAGTTTTGGGAGAATGTTTTTGTTAGTGGGGTCGAGGGAGAATTTTATGTGATTGTAACAATTTTACACATAGTGAAATTTCTTTATATTTGTGGTTTTTTCTCTGATTGTAGAGTTTTTCCACGTAAATTATTTTTTCAGTTATTTTTGCTTATTCCTGCGTGAGAGGTTTTTTTGTACGATAAATGAAAAAGAGATATCGTCCTTGTCAAACACTGATTCATAGGAATATGAGGAAATTTCACTATCTTGACTCTAATTTCTGCACAAACTGGAATCTGGCTGGTCTCAACTGGTTCATTTCTTGGGGTTGGACATTTTGCAGGCAGACCCTCCAGACCCCTCAAAAATCCGGGAAGAAGACATCACCGGAGTTACAGTACTGTTATTAACATGTTCATACATGGGACAAGAATTTGTAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTTCGTGAGGAACCTCCACCAAAAGTTTTGATCGAAAGGATTCAAAGAAACATTCTTGCTGACAAGCCCAGAGTCACAAAGTTCCCAATCAATTTTCATCCGGAGAACTCTGAGCATGGTGGGGAGCAACATTCGTCTCCACCAGCTGAAACCATCAACAATGAAGAAGAAGAAGAAGAATTGCAGCCATCGCCATCACCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATGAACCATCTCTGGATCAGGATGCCATTGATTCTGAAGCTCAGCCCTCAGTCACGACATGAAAGCTCAGCCAAATTAAGGTTTGAGGCGATCCATCTTTGGCAACCTTTTCCTCTTGGTGTTTGTAAGCTAAAGCAGTGAGGTAGATATGCTAATGAGACCAGTTTGAGAATGTGCATTATGATTAAAAGAATTTAGGAAAGATGATTTCATATTTCTGTTATTTAAATGATTCTGATAATTCCAATTCAATTTTGTTTTTTTTTTT

mRNA sequence

CTCCCGCCAAATTGGGCACTCCATTTCCCTCCAAAATTTCCAGCGGCGGCGATATATAATCGACGAACTCAGTTCTTCGTCTTTTCATTTTGGATCTATCTTCAACTTCATCAGTGCCGGTCATCGGCGATACTTATTCTGGCCAGGTTTGTTCGGTCGTCGATGAGTGACCTCCGAATTAGGGTTAAGATCGATCAATTTGTGGAATCAATTTCAGAGCTCCGTTTCGGTTTCTGGCGATGAGTGCCGTCAACATTACGAACGTCACCGTCTTGGATAATCCTGCCGCGTTTCTGAATCCATTTCAGTTCGAGATCTCATATGAGTGTTTAACTCCGCTTAAAGACGATCTAGAATGGAAACTCACCTATGTTGGATCTGCTGAGGATGAAACCTATGACCAACTTTTGGAGAGCGTGCTAGTTGGACCCGTTAATGTAGGCAATTATCGTTTTGTTCTTCAGGCAGACCCTCCAGACCCCTCAAAAATCCGGGAAGAAGACATCACCGGAGTTACAGTACTGTTATTAACATGTTCATACATGGGACAAGAATTTGTAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTTCGTGAGGAACCTCCACCAAAAGTTTTGATCGAAAGGATTCAAAGAAACATTCTTGCTGACAAGCCCAGAGTCACAAAGTTCCCAATCAATTTTCATCCGGAGAACTCTGAGCATGGTGGGGAGCAACATTCGTCTCCACCAGCTGAAACCATCAACAATGAAGAAGAAGAAGAAGAATTGCAGCCATCGCCATCACCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATGAACCATCTCTGGATCAGGATGCCATTGATTCTGAAGCTCAGCCCTCAGTCACGACATGAAAGCTCAGCCAAATTAAGGTTTGAGGCGATCCATCTTTGGCAACCTTTTCCTCTTGGTGTTTGTAAGCTAAAGCAGTGAGGTAGATATGCTAATGAGACCAGTTTGAGAATGTGCATTATGATTAAAAGAATTTAGGAAAGATGATTTCATATTTCTGTTATTTAAATGATTCTGATAATTCCAATTCAATTTTGTTTTTTTTTTT

Coding sequence (CDS)

ATGAGTGCCGTCAACATTACGAACGTCACCGTCTTGGATAATCCTGCCGCGTTTCTGAATCCATTTCAGTTCGAGATCTCATATGAGTGTTTAACTCCGCTTAAAGACGATCTAGAATGGAAACTCACCTATGTTGGATCTGCTGAGGATGAAACCTATGACCAACTTTTGGAGAGCGTGCTAGTTGGACCCGTTAATGTAGGCAATTATCGTTTTGTTCTTCAGGCAGACCCTCCAGACCCCTCAAAAATCCGGGAAGAAGACATCACCGGAGTTACAGTACTGTTATTAACATGTTCATACATGGGACAAGAATTTGTAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTTCGTGAGGAACCTCCACCAAAAGTTTTGATCGAAAGGATTCAAAGAAACATTCTTGCTGACAAGCCCAGAGTCACAAAGTTCCCAATCAATTTTCATCCGGAGAACTCTGAGCATGGTGGGGAGCAACATTCGTCTCCACCAGCTGAAACCATCAACAATGAAGAAGAAGAAGAAGAATTGCAGCCATCGCCATCACCATCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATGAACCATCTCTGGATCAGGATGCCATTGATTCTGAAGCTCAGCCCTCAGTCACGACATGA

Protein sequence

MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDEQLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINNEEEEEELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVTT

Homology

[Close]

BLAST of Tan0012894.1 vs. ExPASy Swiss-Prot
Match: Q9LS09 (Histone chaperone ASF1B OS=Arabidopsis thaliana OX=3702 GN=ASF1B PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.9e-77
Identity = 152/212 (71.70%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MS++NITNVTVLDNPA F+NPFQFEISYECLT LKDDLEWKL YVGSAEDETYDQ+LESV
Sbjct: 1   MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQAD PDP KIREEDI GVTVLLLTCSYM QEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSE--HGGEQHSSPPAETINNE-- 180
           QLREEPP KVLI+++QRNIL DKPRVTKFPINFHPEN +    G   + P A+++ N   
Sbjct: 121 QLREEPPTKVLIDKVQRNILTDKPRVTKFPINFHPENEQTLGDGPAPTEPFADSVVNGEA 180

Query: 181 ----EEEEELQPSPSPSPSAAAAAAAAAADEP 205
               E+ ++LQ       S     A A  D+P
Sbjct: 181 PVFLEQPQKLQEIEQFDDSDVNGEAIALLDQP 212

[Close]

BLAST of Tan0012894.1 vs. ExPASy Swiss-Prot
Match: Q9C9M6 (Probable histone chaperone ASF1A OS=Arabidopsis thaliana OX=3702 GN=ASF1A PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-75
Identity = 141/198 (71.21%), Postives = 164/198 (82.83%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSA+ ITNV VL NPA F++PFQFEISYECL  LKDDLEWKL YVGSAEDETYDQLLESV
Sbjct: 1   MSAIKITNVAVLHNPAPFVSPFQFEISYECLNSLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFV QADPPDPSKI+EEDI GVTVLLLTCSYMGQEF+RVGYYVNNDY+DE
Sbjct: 61  LVGPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAET------IN 180
           QL+EEPP KVLI+++QRNIL+DKPRVTKFPI+FHPE  +      ++PP ++      +N
Sbjct: 121 QLKEEPPTKVLIDKVQRNILSDKPRVTKFPIDFHPEEEQTAAT--AAPPEQSDEQQPNVN 180

Query: 181 NEEE---EEELQPSPSPS 190
            E +   ++ ++P P  S
Sbjct: 181 GEAQVLPDQSVEPKPEES 196

[Close]

BLAST of Tan0012894.1 vs. ExPASy Swiss-Prot
Match: Q9V464 (Histone chaperone asf1 OS=Drosophila melanogaster OX=7227 GN=asf1 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.5e-54
Identity = 113/206 (54.85%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           M+ V+ITNV VLDNP++F NPFQFE+++EC+  LK+DLEWK+ YVGSAE E +DQ+L+++
Sbjct: 1   MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKEDLEWKMIYVGSAESEEHDQVLDTI 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
            VGPV  G + FV QADPPD SKI E D  GVT++LLTCSY GQEFVRVGYYVNNDY D 
Sbjct: 61  YVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCSYRGQEFVRVGYYVNNDYADP 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINNEEEEE 180
           ++RE PP K L E++ RNILA KPRVT+F IN+     ++G   H +     + N  ++E
Sbjct: 121 EMRENPPTKPLFEKLTRNILASKPRVTRFKINW-----DYG---HINGNGNGVENGHQDE 180

Query: 181 ELQPSPSPSPSAAAAAAAAAADEPSL 207
               +  PS S AA+A     D+ SL
Sbjct: 181 --MATDGPSTSEAASAVIHPEDDNSL 196

[Close]

BLAST of Tan0012894.1 vs. ExPASy Swiss-Prot
Match: Q6BYE5 (Histone chaperone ASF1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ASF1 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-52
Identity = 101/181 (55.80%), Postives = 133/181 (73.48%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MS V++  + VL+NPA F +P++FEI++ECL PLK+DLEWKLTYVGS+    +DQ L+S+
Sbjct: 1   MSIVSLLGIEVLNNPAKFTDPYEFEITFECLEPLKEDLEWKLTYVGSSRSLDHDQELDSI 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPV VG  +F+ QADPP P  I   ++  VTV+LL+CSY  +EFVRVGYYVNN+YD E
Sbjct: 61  LVGPVPVGINKFLFQADPPSPELIPASELVSVTVILLSCSYADREFVRVGYYVNNEYDSE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINNEEEEE 180
           +LRE PP KV +E + RNILA+KPRVT+F I +  E+    G     PP + ++ EEEEE
Sbjct: 121 ELRENPPAKVQVEHVVRNILAEKPRVTRFNIVWDNED----GNADEYPPEQQVDEEEEEE 177

Query: 181 E 182
           E
Sbjct: 181 E 177

[Close]

BLAST of Tan0012894.1 vs. ExPASy Swiss-Prot
Match: Q69DB9 (Histone chaperone asf1a-A OS=Xenopus laevis OX=8355 GN=asf1aa PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.2e-52
Identity = 96/159 (60.38%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           M+ V + NV VLDNP+ F NPFQFEI++EC+  L +DLEWK+ YVGSAE E YDQ+L+SV
Sbjct: 1   MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPV  G + FV QAD P+P  I + D  GVTV+L+TC+Y GQEF+RVGYYVNN+Y + 
Sbjct: 61  LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSE 160
           +LRE PP K    ++QRNILA  PRVT+F IN+  EN+E
Sbjct: 121 ELRENPPVKPDFSKLQRNILASNPRVTRFHINWE-ENTE 158

[Close]

BLAST of Tan0012894.1 vs. NCBI nr
Match: XP_023520819.1 (probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.0 bits (1029), Expect = 6.8e-108
Identity = 203/220 (92.27%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINNEEEEE 180
           QLREEPPPKVL+ERIQRNILADKPRVTKFPINFHPENSEHGGEQ+SSPPAE INNEEEEE
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPAEAINNEEEEE 180

Query: 181 ELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
           ELQ SP PSPS  +   +AA+DEPSL+QDA+D+EAQPSVT
Sbjct: 181 ELQASPLPSPS-PSPPPSAASDEPSLEQDAVDTEAQPSVT 219

[Close]

BLAST of Tan0012894.1 vs. NCBI nr
Match: XP_023520975.1 (probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.4 bits (1025), Expect = 2.0e-107
Identity = 202/220 (91.82%), Postives = 210/220 (95.45%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINNEEEEE 180
           QLREEPPPKVL+ERIQRNILADKPRVTKFPINFHPENSEHGGEQ+SSPP E INNEEEEE
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPVEAINNEEEEE 180

Query: 181 ELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
           ELQ SP PSPS     +A A+DEPSL+QDA+D+EAQPSVT
Sbjct: 181 ELQASPLPSPS--PPPSATASDEPSLEQDAVDTEAQPSVT 218

[Close]

BLAST of Tan0012894.1 vs. NCBI nr
Match: KAG6601833.1 (Histone chaperone ASF1B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032538.1 Histone chaperone ASF1B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 203/221 (91.86%), Postives = 211/221 (95.48%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINN-EEEE 180
           QLREEPPPKVL+ERIQRNILADKPRVTKFPINFHPENSEHGGEQ+SSPPAE INN EEEE
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPAEAINNEEEEE 180

Query: 181 EELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
           EELQ SP PSPS      +AA+DEPSL+QDA+D+EAQPSVT
Sbjct: 181 EELQASPLPSPS---PPPSAASDEPSLEQDAVDTEAQPSVT 218

[Close]

BLAST of Tan0012894.1 vs. NCBI nr
Match: XP_022953035.1 (probable histone chaperone ASF1A [Cucurbita moschata])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 203/221 (91.86%), Postives = 211/221 (95.48%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINN-EEEE 180
           QLREEPPPKVL+ERIQRNILADKPRVTKFPINFHPENSEHGGEQ+SSPPAE INN EEEE
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPAEAINNEEEEE 180

Query: 181 EELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
           EELQ SP PSPS      +AA+DEPSL+QDA+D+EAQPSVT
Sbjct: 181 EELQASPLPSPS---PPPSAASDEPSLEQDAVDTEAQPSVT 218

[Close]

BLAST of Tan0012894.1 vs. NCBI nr
Match: XP_022989985.1 (probable histone chaperone ASF1A [Cucurbita maxima])

HSP 1 Score: 391.0 bits (1003), Expect = 7.0e-105
Identity = 200/220 (90.91%), Postives = 210/220 (95.45%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINNEEEEE 180
           QLREEPPPKVL+ERIQRNILADKPRVTKFPINFHPENSEHGGE +SSPPAETINN EEEE
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEPNSSPPAETINN-EEEE 180

Query: 181 ELQPSPSPSP-SAAAAAAAAAADEPSLDQDAIDSEAQPSV 220
           ELQ SP PSP  + +   +AA+DEPSL+QDA+D+EAQPSV
Sbjct: 181 ELQASPLPSPLPSPSPPPSAASDEPSLEQDAVDTEAQPSV 219

[Close]

BLAST of Tan0012894.1 vs. ExPASy TrEMBL
Match: A0A6J1GNK0 (probable histone chaperone ASF1A OS=Cucurbita moschata OX=3662 GN=LOC111455553 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.1e-107
Identity = 203/221 (91.86%), Postives = 211/221 (95.48%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINN-EEEE 180
           QLREEPPPKVL+ERIQRNILADKPRVTKFPINFHPENSEHGGEQ+SSPPAE INN EEEE
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPAEAINNEEEEE 180

Query: 181 EELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
           EELQ SP PSPS      +AA+DEPSL+QDA+D+EAQPSVT
Sbjct: 181 EELQASPLPSPS---PPPSAASDEPSLEQDAVDTEAQPSVT 218

[Close]

BLAST of Tan0012894.1 vs. ExPASy TrEMBL
Match: A0A6J1JNV5 (probable histone chaperone ASF1A OS=Cucurbita maxima OX=3661 GN=LOC111487014 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.4e-105
Identity = 200/220 (90.91%), Postives = 210/220 (95.45%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAETINNEEEEE 180
           QLREEPPPKVL+ERIQRNILADKPRVTKFPINFHPENSEHGGE +SSPPAETINN EEEE
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEPNSSPPAETINN-EEEE 180

Query: 181 ELQPSPSPSP-SAAAAAAAAAADEPSLDQDAIDSEAQPSV 220
           ELQ SP PSP  + +   +AA+DEPSL+QDA+D+EAQPSV
Sbjct: 181 ELQASPLPSPLPSPSPPPSAASDEPSLEQDAVDTEAQPSV 219

[Close]

BLAST of Tan0012894.1 vs. ExPASy TrEMBL
Match: A0A5A7TY70 (Putative histone chaperone ASF1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00060 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 193/223 (86.55%), Postives = 198/223 (88.79%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPP---AETINNEE 180
           QLREEPPPKVLI+R+QRNILADKPRVTKFPINFHPENSEHG EQ  S P   AE +NN  
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENSEHGAEQQPSSPHHSAEALNN-- 180

Query: 181 EEEELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
            EEELQP PS          A+AADEP LDQ+AIDS  QPSVT
Sbjct: 181 -EEELQPPPS----------ASAADEPPLDQEAIDSGPQPSVT 210

[Close]

BLAST of Tan0012894.1 vs. ExPASy TrEMBL
Match: A0A1S3CSW5 (probable histone chaperone ASF1A OS=Cucumis melo OX=3656 GN=LOC103504582 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 193/223 (86.55%), Postives = 198/223 (88.79%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPP---AETINNEE 180
           QLREEPPPKVLI+R+QRNILADKPRVTKFPINFHPENSEHG EQ  S P   AE +NN  
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENSEHGAEQQPSSPHHSAEALNN-- 180

Query: 181 EEEELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
            EEELQP PS          A+AADEP LDQ+AIDS  QPSVT
Sbjct: 181 -EEELQPPPS----------ASAADEPPLDQEAIDSGPQPSVT 210

[Close]

BLAST of Tan0012894.1 vs. ExPASy TrEMBL
Match: A0A0A0KUZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576630 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.2e-98
Identity = 191/223 (85.65%), Postives = 198/223 (88.79%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLT LKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTSLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGP+NVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE
Sbjct: 61  LVGPINVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPP---AETINNEE 180
           QLREEPPPKVLI+R+QRNILADKPRVTKFPINFHPENSEHG EQ  S P    E +NN  
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENSEHGAEQQPSSPHHSVEALNN-- 180

Query: 181 EEEELQPSPSPSPSAAAAAAAAAADEPSLDQDAIDSEAQPSVT 221
           EEEELQP PSPS          AADEP LD++AIDS +QPSVT
Sbjct: 181 EEEELQPPPSPS----------AADEPPLDKEAIDSGSQPSVT 211

[Close]

BLAST of Tan0012894.1 vs. TAIR 10
Match: AT5G38110.1 (anti- silencing function 1b )

HSP 1 Score: 288.9 bits (738), Expect = 3.5e-78
Identity = 152/212 (71.70%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MS++NITNVTVLDNPA F+NPFQFEISYECLT LKDDLEWKL YVGSAEDETYDQ+LESV
Sbjct: 1   MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQAD PDP KIREEDI GVTVLLLTCSYM QEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSE--HGGEQHSSPPAETINNE-- 180
           QLREEPP KVLI+++QRNIL DKPRVTKFPINFHPEN +    G   + P A+++ N   
Sbjct: 121 QLREEPPTKVLIDKVQRNILTDKPRVTKFPINFHPENEQTLGDGPAPTEPFADSVVNGEA 180

Query: 181 ----EEEEELQPSPSPSPSAAAAAAAAAADEP 205
               E+ ++LQ       S     A A  D+P
Sbjct: 181 PVFLEQPQKLQEIEQFDDSDVNGEAIALLDQP 212

[Close]

BLAST of Tan0012894.1 vs. TAIR 10
Match: AT1G66740.1 (ASF1 like histone chaperone )

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-76
Identity = 141/198 (71.21%), Postives = 164/198 (82.83%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSA+ ITNV VL NPA F++PFQFEISYECL  LKDDLEWKL YVGSAEDETYDQLLESV
Sbjct: 1   MSAIKITNVAVLHNPAPFVSPFQFEISYECLNSLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120
           LVGPVNVGNYRFV QADPPDPSKI+EEDI GVTVLLLTCSYMGQEF+RVGYYVNNDY+DE
Sbjct: 61  LVGPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDE 120

Query: 121 QLREEPPPKVLIERIQRNILADKPRVTKFPINFHPENSEHGGEQHSSPPAET------IN 180
           QL+EEPP KVLI+++QRNIL+DKPRVTKFPI+FHPE  +      ++PP ++      +N
Sbjct: 121 QLKEEPPTKVLIDKVQRNILSDKPRVTKFPIDFHPEEEQTAAT--AAPPEQSDEQQPNVN 180

Query: 181 NEEE---EEELQPSPSPS 190
            E +   ++ ++P P  S
Sbjct: 181 GEAQVLPDQSVEPKPEES 196

The following BLAST results are available for this feature:

BLAST of Tan0012894.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS09	4.9e-77	71.70	Histone chaperone ASF1B OS=Arabidopsis thaliana OX=3702 GN=ASF1B PE=1 SV=1	[more]
Q9C9M6	2.7e-75	71.21	Probable histone chaperone ASF1A OS=Arabidopsis thaliana OX=3702 GN=ASF1A PE=1 S...	[more]
Q9V464	1.5e-54	54.85	Histone chaperone asf1 OS=Drosophila melanogaster OX=7227 GN=asf1 PE=1 SV=1	[more]
Q6BYE5	1.1e-52	55.80	Histone chaperone ASF1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / B...	[more]
Q69DB9	4.2e-52	60.38	Histone chaperone asf1a-A OS=Xenopus laevis OX=8355 GN=asf1aa PE=1 SV=1	[more]

BLAST of Tan0012894.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520819.1	6.8e-108	92.27	probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo]	[more]
XP_023520975.1	2.0e-107	91.82	probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo]	[more]
KAG6601833.1	1.7e-106	91.86	Histone chaperone ASF1B, partial [Cucurbita argyrosperma subsp. sororia] >KAG703...	[more]
XP_022953035.1	1.7e-106	91.86	probable histone chaperone ASF1A [Cucurbita moschata]	[more]
XP_022989985.1	7.0e-105	90.91	probable histone chaperone ASF1A [Cucurbita maxima]	[more]

BLAST of Tan0012894.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNK0	8.1e-107	91.86	probable histone chaperone ASF1A OS=Cucurbita moschata OX=3662 GN=LOC111455553 P...	[more]
A0A6J1JNV5	3.4e-105	90.91	probable histone chaperone ASF1A OS=Cucurbita maxima OX=3661 GN=LOC111487014 PE=...	[more]
A0A5A7TY70	1.4e-98	86.55	Putative histone chaperone ASF1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CSW5	1.4e-98	86.55	probable histone chaperone ASF1A OS=Cucumis melo OX=3656 GN=LOC103504582 PE=3 SV...	[more]
A0A0A0KUZ5	5.2e-98	85.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576630 PE=3 SV=1	[more]

BLAST of Tan0012894.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38110.1	3.5e-78	71.70	anti- silencing function 1b	[more]
AT1G66740.1	1.9e-76	71.21	ASF1 like histone chaperone	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036747	Histone chaperone ASF1-like superfamily	GENE3D	2.60.40.1490		coord: 1..157 e-value: 5.4E-76 score: 255.7
IPR036747	Histone chaperone ASF1-like superfamily	SUPERFAMILY	101546	ASF1-like	coord: 1..153
IPR006818	Histone chaperone ASF1-like	PFAM	PF04729	ASF1_hist_chap	coord: 1..153 e-value: 1.0E-69 score: 233.3
IPR006818	Histone chaperone ASF1-like	PANTHER	PTHR12040	ANTI-SILENCING PROTEIN 1	coord: 1..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..221
None	No IPR available	PANTHER	PTHR12040:SF18	HISTONE CHAPERONE ASF1B-RELATED	coord: 1..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0012894	Tan0012894	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0012894.1-five_prime_utr	Tan0012894.1-five_prime_utr-LG11:20299686..20299924	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0012894.1-exon	Tan0012894.1-exon-LG11:20299686..20300033	exon
Tan0012894.1-exon	Tan0012894.1-exon-LG11:20301090..20301205	exon
Tan0012894.1-exon	Tan0012894.1-exon-LG11:20302011..20302657	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0012894.1-cds	Tan0012894.1-cds-LG11:20299925..20300033	CDS
Tan0012894.1-cds	Tan0012894.1-cds-LG11:20301090..20301205	CDS
Tan0012894.1-cds	Tan0012894.1-cds-LG11:20302011..20302451	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0012894.1-three_prime_utr	Tan0012894.1-three_prime_utr-LG11:20302452..20302657	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0012894.1	Tan0012894.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
biological_process	GO:0006335	DNA replication-dependent chromatin assembly
biological_process	GO:0006336	DNA replication-independent chromatin assembly
cellular_component	GO:0005634	nucleus
molecular_function	GO:0042393	histone binding