Tan0012792.1 (mRNA) Snake gourd v1

Overview
NameTan0012792.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
LocationLG03: 38604827 .. 38614526 (-)
Sequence length273
RNA-Seq ExpressionTan0012792.1
SyntenyTan0012792.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACACAGGTCATTTTCTGTTGTTGACGTTGAGTGTATTCCGTGACAACAATGCTTTCGTGAGTGCTGGGCGGACCCCACTACGACAAAAACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTGGATTGTGACATGTTTTAAAAAGGATTTATATCATTCATATGCCTTACGAGATTTAGCGACATACTTGCTGGTTTTCCTGAAAAGCTATTATGATTACACAGTTACTTTTAACGTTTGATTACAGATGCATATGCTCATAGATGATCAGGTGATATGATTTACGAGTTAATAGTTTTCTTTTAAACTCAAGTCACTCACTGAGCTTCATAGCTCATTCTTTCAGTGTTTTCCCACTTTTCAGGTATAGATCAAGCTCCCAAAGGCTCCGACATCCCGCCATAGTTCACCTGGAAGCTCAACGAGCTTGATATTTTGTACGTGGGTGGTGTTGTATAGCAAGTCCATATGTGTTGTAGTAAATGTTTGAGGGGACTATGTAGTTATAGTTGTATGTGCTTTAGAGTTTGTGGTTTTGATGATTTTGCCCGTTCAGTTTTCAAGAGAGTCTTAAGTAGGGTTACTCCTTACGTAGATTACGTAATTGTCAATATTCCGCTGTGGTATGTTTAAAGTGTTTCTTATACAAGTATAGTATGCTTATCAGGTAAAACAGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTTTGTTGGCTTCACGCCGTCTGTCGGGCTAAGTTAGCTGGTAGCTTGGGAGGGGGTGTGACATTTAGAACTCAATCTCAAAGACCCCAAAACCAATTTTGAAAATCAACTCAAGGAAAGTAAAATCGGATTACCTTGTCGATCAAATATCTCAAGGGAGGCGAACTTGTATGAGATAAGAATCACTCCACAAGCAAGATTGATCAAGTCAAACTTGAATTATTATAAACATGCAACCTAATCTGCATAGAATTGTAAAGAAACATAGCTCTAGGTTATAATTAAGCACAAAGGCCTCTTTTGAATACATTTTCCAATTCTTTTTCTGTTCCATGGATTACATGTGTGGCTATTTATAGACTTCAAGATTAAACCATAAAGATAACCTATGGCAATTTAAGGGTTGTAACTTACATCCCCATCAATACCATAATGTCAACTAGCTATTTTGTAACCTAAAACATTGAAAACAAGACTTTGAAACTGAAAATTACATCAAATTAGCCATAAATCTGCGAATGATGTCTCTTTGTTAGTTTTGTAACTCTTTGTAACCATCCAAGAGTAAATGAAGCATATCATGAAATATCTTGAAGCCCTTGTTCCATAAATGAAGCTTGTTGTTCTTTCATAAATGATGAGTTGCTGATAGGAAATTGATGAGAAATTGAAAAATCTAACAACAAAACAAGACCAAGATCACAAATAAAAAAAAAACTCCAAACCAAAATGAAATCAAAGAAGCCAAATATTCTAATGTCAAAATGTTAATTAGCCCTTGACAATTGGATCTAACAACCTTGCTTAAAGAAAAAAGACCTTTAGATAACTCAATCTCAAAGACCCCAAAATCAATTTTGAAAATCAACTCAAGGAAAGTAAAATCAAATTACCTTGTCGATCAAGCATCTCAAGGCAAGAGAACTTGTATGAGATCCGAATCACTGCACAAGCAAGATTGATCAAGTCAAGCTTGAATGATTCTAAGCATGCGGATCTACATTGAATTGCAAAGACATAGCTCAAGGCTATAAAAAGCACAAAGGTTTCTTTTGATTACATTTTCCAATCTTTTTCTTTTTTCCATGGATTACAAGTGTGGCTATTTATAGCCTTCAAAATGAAACCCTAAAGATAACCTATGGAAACTTAAGGGTTGTAACTTACATCCCCATCAATACCATAATGTCCACTAGCTATTTTGTAACCTAAACATTGAAAACAAGACTTTAAAATTGAAAATTACATCAAATTAGCTATAAATCCGAGAATGATGTCTCTTTGTTAGCTATTGAACTCTTTGTAACCATCCAAGAGTAAATGAAGTACATCTTGAAGTATATCTGGAAGCCCTTGTTCCATAAATGAAGCTTGTTGTTTTTTAATAAATGATGAGTTGCACTTGAGTTCATTAAATGAAACTTATGTTAAATTTCCATGAATTTGACTTCATTTAATGTGACTTCATGAGATGCCCTGGTTCATATCAGTTGCACTTGAGTTCATTAAATGCAATTTATGTTATGCATCCATGAATTTGACTTCATGAGATTCCTTGGTTCATATTATCAAGTGCAACTCATGTTAAGCTTCCATGAATTTGACTTCATTTAACGTGACTTCATGAGATGCCTTGGTTCATATCAGATCCCAATGTGGATTTCCTTGAATCTACATCAGTCTGAAAATTCGAGTCAGTGTATCCTGCAAGGATCAAATCTTTTGCGCCATACACAAGCATATAGTCTCTCGTTCTCCTAAGATACTTGAGGATGTTCTTAACGACAACCCAATGATTATATTGATAAGAATCGTGGTCTTCCACACTTTCCGACTGGACCTATTACACACGCGAAACTAAGAAGCTTAAACAAGCATTCTTTATTCACATACAAAATTGGATAGGTTCAGCTCAACCTCCATTTCATATGCTCCAACTTGATCCAAGAGGCACGACGATGTGAAGGTCAACGTTGTCAAGATTGACGTTATGCCAACATTTTAAAGACTCATTTTCTATTTTAAGTCATGAACTTTTGATTGTAATTTTTGAACTTTTGGGCTTTCAAACTATGGTTTCAAAGTTAGACTTCAATTGTGAGGAGTTACTAAGTAGGTTGATTATGGTCATTAATAGTTTCAGGTTTTATTTTTGGGAAAACTAAAAGGTTGGCGATTTTATTCACATATGGGCTATAAAAAGCCACATCATAGCCATGTAAAACTCAGACTTTGATGAATGAAATTTTATCTCTCAAGTTAGAGAGTTTTCTTAGAAATCCTTTAGTAAGGGTTCTTGCAATTCTTGTGATAGATTGCATTTTGAGTCATTCAATCTAGCCTTGATCACGTTTGATTGTGGAATGACTCAATCTAGAACAAGATTTCCAATATTGCTTCTAGATCTTTGATCATAAGAGGTAATCGATTTCTAGCATTTCCTCTTGGTTGATTCTAAATTGTATAGGGAGGTGTTAATCTCTTAGTTTAATGGTTCTTGCTTATCTGATATGAATCCTACAACGCTAGTGAAGACTAAAGAACAACTAAAAATGGAGTTGCATTTAATGCATCAAGGTTTCATTTATGGTGAACTCAAGTTGCATTAAAGTTGAAGTCAAGTTGCATTGAAAGAACTTAAGTTGCAATTAAATGAAATTAAGTGCATCTCAAGCTTCATTTAATGCAGGTCAAGCATCAATTAATGGGACTACACTTCAAGTTACTTCAAGTGGAGTTTCATTTACACCTTGGGAGGTTACAAAGACTAGGATTGTTGTTAGAAGATTAATTCTCGGATTTATATCTCATTTACTTGTAATTTCAGTTTTAAAGTTTCTATTTCAATGTTTTAGGTTACATTTGAGTAGTGAATGGTTATGACATTAAAGTTAGGGAAGTTATATTCTCAAACATGTCATTTTAGGTTAGTTTTAGGTTACAATTCAAAGACTATATAAACCCATCAAAGATGTATTGTAAAAGAGGAAGACTTGGAATCATGTTTTGAATGAAAAGTTGCATATTTTTCTTTTTAAGCCATGAGCTTGTTTCTTTGCATATCTTGTGTTTAGATTTGCATGCTGGGATCATTCAAGTAGCGTTGATCAAACTACTTGTGGAGTGATTCGAATCTTGAGTTTAGAAACAAGTTTTCTCTACTCTTGATCTTGATCATCAAGGTAAATCCGTTTCTATCTTCTTCCTTGGGATGAAATCATCTAGGTTTGGGGTTTTTGAGTTTTAGATCTAAAGGTCTTGTTCTTCAACAAGGTTGTTAGATTTAAATCATCAAGAGTTACTTATCATTATCCATAGCTTGGATCTTTGGATTGAGAATTAGGGTTGCCTTATCATATATCCTGGATTGGACCGATATCTGCTGACAATTCCCACTGCATAGCATATGTCGGGTCGAGTACATAGCATGGCATACATTAGACTACCGGCAACTGATGCATAGGGAATGCGTCTCATATCCTCAACTTCTTGAGGTGTCTTAGGACACTGTTCCTTTGACAAATGAATTCCATGCCTGAAAGGTAATAAATCCTTTTTGGAATTCTGCATCTTATATCTAATCAACATCTTGTCAATATAAGATGCCTGAGAAAGTGCTAGCATTTTATTCTTGCGATTCTGGAAAATTTGGATTCCAAGGACAAAATGAGCCTATCTCAAATCTTTCATTTGAAATTGGGTTGCTAGCCATTGGTTAACGTCAGTCAGGAATCCTGCATTATTCCCAATGAGCAGAATATCGTCTACGTATAAGACTAAGAAAGCTACAGTGGTATTGGTTATCTTCTTGTAGACACAAGGCTCGCCAATATTCTGTTCAAAGCCATAAGATTTGATCACACTATCAAAACTTATATTCCAAGATCTAGATGTTTGTTTGAATCCATAGATGGATCGTGTTAAGTAACTTCCAAGAATTAGACCTAACAACCAACAAGACCTTTAGATCTAAAACTCAAAAACTCCAAAACAACATGGAATCAACCCAAGGAAAAGTGTGGAATGGATTACCTTGATGATCAAGATCAAGAGTAAAGAAAACTCGTTTCTAAACTCGTGATTCAAATCACTCCACAAGAGGTACGATCAACACCACTTGAATGCTCTAGCATGCAAATTCTAAACACAAGAAATTGCAATAAGGAAAACTTAGCATTCAACAAATCTAAAAGAAAAACTCAACTCATTCACTTCAAAATTTTGTCTATAATGGAAGAAGATAGGGCTTTATATAGCCTTTGAGACCCTAACCTAATTGAAAAAGAAGACAAATAGACACTAACTTTATGGGCTAGTTGATATGAATCCTATCATTCTAGAGAAAAACTTCAAAATGGAGTTGCATTAAATGTTGTCCAACTTCATTTATGGCAAACAAAAGATGCATTTAATGAACTCAAGTGCAATAAATGATTCATTAAAGAGATGTCAAGCTTCATTTATGCAACAAGAGTATCAAGCTACATCAAGGGGGCTTCATTTATGCATGAGAAGTTACAACCATTATGTAGGGTGATTGAAAAATCAATCCTTGGATTTATGGCTAATTTGATGTAAATTTCAGTTTTAAAGTCTTGTTTTCAATGTTTTAGGTTAAGAAATAGCTAGTAGGGATCATGGTATTTGTAAACCCGAGATCTCTCTTTGGAATTTCCTTACAAAAAAAAAAGAGAAAACAAAAGAAAACAAGAAAGGAATATATTTTGGTTTGGTTTTGTTTTGAAAACAAAAGAAAAGAAAAGAAAAGGAAGAATGAGATAAAGGAAAAGAATAAAGGAAAAAGAAAAAGGAAAAAGGAAAAGGACAAAAACCACTGTATATGTCTTTTTAACATTATTTTAACCCACCTTCTCCCCATTTCCATCTCATTTTTCACAAATTAAGCCAGAGCTTCGTGGGAGAGAAATGAAGAAAGAAGAAGGAAAGCTGGTTTTGGTTTGAATCTGAAGAAGAAAGGAGAAAGGTTCAATTGAAGGTTCCATGGAAACTCAATGTTTAACTCAGTCAAGTTCTGATATTTGGATCATTTCGAGCTCCACAAGAAGAGGTAAGAGCTGAAAGTTAACTCATATTTGAACAAAAATCGTGAAGGAAGCTCGAGCAATATCTGACCATAAGTTACTGATTTGTGAAGAGGAAGACAGATTTTGCTGTCAAATCCGAGAACTCTAATAGGTATGGTTGGAAAGTTTATTGAATTTCCTACAACTTTCATGAAGAACTCATGAGAAGAAATCGACTGGAAGATGTTTTAATTTTCAGGCCAAGTTTCGGGTTGCAGCAGGGAAACGAATCTGGAATAGCAGAAGTTTGTTTCTGGCAAAGAAGCTTTTGAGGTATTTTCGAACAAATCCGTTGGGAATCTCAATTTCCTTTCTTCATATGATTTTTAGAGGGTTCAAAAAGGAAGAGTTTGGTATAATGTACATCCTATTTGGTTAAGTAATGAAGGAGTTATGGATGTCTGAAGTCAGGGTATAGAATCTGTAAAATTCTGGAAAATTGGATGGTGTGATTTTTGTAATTTTAAGGTTGCAAATCATGAGCTCGAGGTTCTAATGCTTGGATTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAGATTCTAGTTCTAACACTATGAGTGACAAAACGAACCTCGAAAATGGTTTATAGGCTTGTACTATGCTTATGAAAATGCAAGGTTTTGCTAAAACGAAATGGTTTCAATGCTTATTATTTTCCTTTGAACACATGTTTATAGTATTCATATTTTCTAAGAAATGATTTCAAGTGCTCGTTGTGAGCCTAAATGTCTTGATGAAATTTATATGTGAGCATATGTTCTTGATTGTCGAAATTTATGGAAATGTTATGATTTCGAGCAAGTATGTACTAGCAAGTATGATTTAAAGATTTCCAGTTTTAATGAACAAGCTGAGTAAGCTTGAGTTTTACGAAAGGAAAGATAAGCAGGCATGTTTAAATGTTTTTATGTGTTTTTCTGAGTCTTGAATGAGTAAATGACTGAGACATTGAGCCGGAGGCTATATGGTACCGTGTGCACACAAGCCATTTTCTGTTGTCGACGTTGAGTGTACTCTGTGACAACAATGCTGTCGTGAGTGCTGGGTGGGCCCCACTACATCGTAGAGTAAACGTGGGTTGTATTGAGTGTGTCCTACACAACGTAGATTGTCATACTTTTTTAAATGGTTAGTAGTATTGATATGCCTTGCGAGATTTTAATGACGTACTTGCTGGATTTCTGAAAAGTTATTATGATTATACGTGTATTTCTAACGCTTAATTACAGATGCATATGCTTATAGGTTCCAGGTGATATGATTTATGAGTTATTAGATCTTTAACTCAGTCACTCACTGAGCTTCATAGCTCATTCTTTCGTGTTTTCAAACTTGTCAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATAGTCTGCTGGAAGCTCCATGAGGTTGATATTTTGTACGTGGGTGGAGTTGTATAGGAAGTCTATATGTATTGTAGGAGGAATATGAAGTTATGATGTGTACATTCTAGGTTGTGGCTGTGTAAACCATGGTTGGGTATGTTTTTGGTTGTGATGTTCATATCCGTTTCAGTTTTCAAGAGAGTCTTAAGTAGAGTTACTTCTTACGTAGGTTACGTAATTGTCAATATTCCGCTGTGGTATGTTTAAAGTGTTTCCTTATACAAGTATAGTATGCTTATCAGGTAAAACAGGGTCAACAGGTGTCGTTAGGAGGTGAACGATGTCTGTTGGCTTCACTCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAGTATTGGTGGAGATGAAAGTTACAATCTTTTAATTGACCATAGGTTACTCTAGGGTTGATTTTGAGGCTATATAATGCCATGTAACTTGTAGAAAAGAAGAAGAAGAAAAAAAATGAGAGATTAAAAATGTAATCATAAGAGGCCTTTGTGCTTTTTTATAGTCTTGAGCTATGTCTTTGCAATTCTATGTAGATTAGATTGCATGCTTAGAATCATTCAAGCTTGACTTGATTAATCTTGCTTGTGGAGTGATTCGGATCTCATACAAGTTCTCTTGCCTTGAGATGTTTGATCGAAAAGGTAATCCGATTTTACTTTTCTTGAGTTGATTTCAAAATTGGTTTTGGGGTCTTTGAAATTGAGTTCTAAAGGTCTTGTTTCTTTAAGCAAGGTTGTTAGATCAATTTTCAAAGGTTACTTAACATTTTGACATTAGAATCTTTGGCTTCTTTGATTTCATTTTCATTTGAAATTTTTTGGTTTTGAGATTTAATGGTCTTGTTTTATGAATAAGGTTGTTAGATTTTCAAATTCACCTTTAATTTCTCATCACCAAGGAAGAAGATAGAAATAGATTTACCTTGATGATCAAGATCAAGAGTAGAGAAAACTTGTTTCAAAACTAAAGATTCAAATCACTCCACAAGTAGTTTGATCAACGCTACTTGAATGATCCTAGCATGCAAATCTAAACACAAGATATGCAAAGAAACAAACTCATGGCTTAAGAAGAAAAATATACAACTTTTCATTCAAAACATGATTCCAAGTCTTCTTTACAATACATCTTTGATGGCTTTATATAACCTTTGAATTGTAACCTAAAATAATCTAAAATCACATGTTTAATATTGAAACCTCTGCAACTTTAATACCATAACTATCCACTACTCAATGTAACCTAAAATTTATGAAATATGCTTAAAAACTGAAAATTACATAATAGAGGGGCATAAATCCGAGATTGAATATTGCATTCATTCTTCTAGGTATTTGTAGCCATCCATTAGTAAATGAAGCTCATGTTGAAGTATCTTGAAGTGTAGTTCCATTAATTGATGGTTGCCTTGCATTAAATGAACTTGAGCTTGAGTTTTATGAACCAAAAAGATAAGCTGGCATGTTCAAATGTTTTCATGTGATCTTCTGAGATATTGAGCCCGAGGCTATGTAGTACCGTGTGCACACAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAATAAACGTTGGTGTATCTTTGGCGCGTGCCTACACAACGTAGATTGTGACATGTTTTAAAAAGAGCTTATATCATTTACATGCCTTACGAGATTTTAACGGTATACTTGTTGGTTTTCATGAAAAGCTATTATGATTACACAGTTACTTTTAACATTTGATTACAGATGCATATGCTCATAGATGGCCAGGTGATATGATTTACGAGTTAATAACTTTCTTTAAAACTCAAGTCACTCACTGAGCTTCATAGCTCATTCTTTCAGTGTTTTTCCCCACTTTTCAGGTAGGATCGAGCTCCCGGTGCCTGATAACCTGCCATAGTCTGCTGGAAGCTTCTCATGTTTGATATGTTGTACGTGGTTGGTGTAGTTTAGCAAGTCCATATGTTTGTAAATTATTTTAAGAGAACTATGTAGTTATAGTCGTATGTGCTTTAGAGGTTGTGGTTGCTTAATTAGTGGTTTGGACTGTTTGTGGTTCTGATGTTCTTGCTCGTTTTAGTTTCCAGGAGAGACTTAAGAAGAGTTTCTCCTCATGTACGTCTTAGAGATGTCCAGTTTCCGCTGTGTTAAGTTTAAAGTGTTCCATATGCGAACATAGTTTGTTTTCAGGTAAAGTAGTGTCAGCAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTCCCGGGCTAAGTTAGCAAGTGGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTAGCTTATATCATTTACATGCCTTACGAGATTTTAACGGTATACTTGTTGGTTTTCATGAAAAGCTATTATGATTACACATGTCAGCAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTCCCGGGCTAAGTTAGCAAGTGGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTAGCTTATATCATTTACATGCCTTACGAGATTTTAACGGTATACTTGTTGGTTTTCATGAAAAGCTATTATGATTACACATGTCAGCAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTCCCGGGCTAAGTTAGCAAGTGGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDNLAYIIYMPYEILTVYLLVFMKSYYDYTCQQVLLRGNNVCWLHAVSRAKLASGSGGGVTTWYQSS
Homology
[Close]
BLAST of Tan0012792.1 vs. NCBI nr
Match: TYK14494.1 (uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 48/106 (45.28%), Postives = 55/106 (51.89%), Query Frame = 0 

Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLAYIIYMPYEILTVYLL 60
          MTEILS RLYGTVCTQ                 VEIELPV D L                
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLP--------------- 60

Query: 61 VFMKSYYDYTCQQVLLRGNNVCWLHAVSRAKLASGSGGGVTTWYQS 90
             +S    +    ++R ++VCWLH+V RAK ASG GGGVTTWYQS
Sbjct: 61 TSAESSESNSRSAGIVRRDDVCWLHSVFRAKTASGPGGGVTTWYQS 91

[Close]
BLAST of Tan0012792.1 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQVEIELPVPDNLAYIIYMPYEILTVYLLVFMKS----YYDYTCQQ 60
           MTEILS RLYGTVCTQV+IELP+PD L             +L ++ +S     + Y   Q
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  V----------------LLRGNNVCWLHAVSRAKLASGSGGGVTTWYQS 90
           V                ++RG++VCWLHAV R K A   G  VTTWYQS
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVTTWYQS 109

[Close]
BLAST of Tan0012792.1 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLAYIIYMPYEILTVYLL 60
           MTEILSPRLYGTVCTQ                 VEIELPVPD L           + +L 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VFMK-SYYDYTCQQVLLRGNNVCWLHAVSRAKLASGSGGGV 84
           ++++  + +      ++R ++VCWLHAV RAK A G GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Tan0012792.1 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLAYIIYMPYEILTVYLL 60
           MTEILSPRLYGTVCTQ                 VEIELPVPD L           + +L 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VFMK-SYYDYTCQQVLLRGNNVCWLHAVSRAKLASGSGGGV 84
           ++++  + +      ++R ++VCWLHAV RAK A G GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Tan0012792.1 vs. NCBI nr
Match: KAA0025985.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 16 QVEIELPVPDNLAYIIYMPYEILTVYLLVFMKSYYDYTCQQVLLRGNNVCWLHAVSRAKL 75
          QVEIELPVPD L  + Y P ++     ++             + R ++VCWLH V RAK 
Sbjct: 6  QVEIELPVPDTLPTLFYKPSDVRAASYVLGSAG---------IAREDDVCWLHTVFRAKT 65

Query: 76 ASGSGGGVTTWYQSS 91
            GSGGGV+TWYQSS
Sbjct: 66 TGGSGGGVSTWYQSS 71

[Close]
BLAST of Tan0012792.1 vs. ExPASy TrEMBL
Match: A0A5D3CU23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00050 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 48/106 (45.28%), Postives = 55/106 (51.89%), Query Frame = 0 

Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLAYIIYMPYEILTVYLL 60
          MTEILS RLYGTVCTQ                 VEIELPV D L                
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLP--------------- 60

Query: 61 VFMKSYYDYTCQQVLLRGNNVCWLHAVSRAKLASGSGGGVTTWYQS 90
             +S    +    ++R ++VCWLH+V RAK ASG GGGVTTWYQS
Sbjct: 61 TSAESSESNSRSAGIVRRDDVCWLHSVFRAKTASGPGGGVTTWYQS 91

[Close]
BLAST of Tan0012792.1 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQVEIELPVPDNLAYIIYMPYEILTVYLLVFMKS----YYDYTCQQ 60
           MTEILS RLYGTVCTQV+IELP+PD L             +L ++ +S     + Y   Q
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  V----------------LLRGNNVCWLHAVSRAKLASGSGGGVTTWYQS 90
           V                ++RG++VCWLHAV R K A   G  VTTWYQS
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVTTWYQS 109

[Close]
BLAST of Tan0012792.1 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLAYIIYMPYEILTVYLL 60
           MTEILSPRLYGTVCTQ                 VEIELPVPD L           + +L 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VFMK-SYYDYTCQQVLLRGNNVCWLHAVSRAKLASGSGGGV 84
           ++++  + +      ++R ++VCWLHAV RAK A G GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Tan0012792.1 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDNLAYIIYMPYEILTVYLL 60
           MTEILSPRLYGTVCTQ                 VEIELPVPD L           + +L 
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VFMK-SYYDYTCQQVLLRGNNVCWLHAVSRAKLASGSGGGV 84
           ++++  + +      ++R ++VCWLHAV RAK A G GGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Tan0012792.1 vs. ExPASy TrEMBL
Match: A0A5A7SNE5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003030 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 16 QVEIELPVPDNLAYIIYMPYEILTVYLLVFMKSYYDYTCQQVLLRGNNVCWLHAVSRAKL 75
          QVEIELPVPD L  + Y P ++     ++             + R ++VCWLH V RAK 
Sbjct: 6  QVEIELPVPDTLPTLFYKPSDVRAASYVLGSAG---------IAREDDVCWLHTVFRAKT 65

Query: 76 ASGSGGGVTTWYQSS 91
            GSGGGV+TWYQSS
Sbjct: 66 TGGSGGGVSTWYQSS 71

The following BLAST results are available for this feature:
BLAST of Tan0012792.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0012792.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14494.11.0e-0945.28uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa][more]
KAA0062407.11.3e-0944.04uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK... [more]
TYK27998.12.1e-0743.56reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.12.1e-0743.56reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0025985.14.7e-0746.67reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Tan0012792.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CU234.9e-1045.28Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V6386.4e-1044.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DX391.0e-0743.56Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG91.0e-0743.56Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7SNE52.3e-0746.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34... [more]
BLAST of Tan0012792.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0012792Tan0012792gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0012792.1-cdsTan0012792.1-cds-LG03:38604827..38604940CDS
Tan0012792.1-cdsTan0012792.1-cds-LG03:38605421..38605499CDS
Tan0012792.1-cdsTan0012792.1-cds-LG03:38607261..38607292CDS
Tan0012792.1-cdsTan0012792.1-cds-LG03:38614479..38614526CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0012792.1-exonTan0012792.1-exon-LG03:38604827..38604940exon
Tan0012792.1-exonTan0012792.1-exon-LG03:38605421..38605499exon
Tan0012792.1-exonTan0012792.1-exon-LG03:38607261..38607292exon
Tan0012792.1-exonTan0012792.1-exon-LG03:38614479..38614526exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0012792.1Tan0012792.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity