Tan0011384.1 (mRNA) Snake gourd v1

Overview


Name	Tan0011384.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG11: 9684259 .. 9684633 (-)
Sequence length	375
RNA-Seq Expression	Tan0011384.1
Synteny	Tan0011384.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTTCAGAGTCTCGAAAGCGAAAGATCAAGAAGCCGCCACTCCCGCCGAGGGCTGCCAAATTTGCCCGCCGGCCGCCGCCGGAGATGAAAAGGTGCGAGGAGGAGCCGATGATAATTGACGTGGAAGAAGAAGACGTCTCACAGTCACAATTCAAGGACATTGTTCAACTCCTCACCGGCAGCCGCCACCGCCAACTTCCCCTTTTCTTCTCCGACGCTTCTTCCGATCATCAGGTGGGAATATTGTCGCCGACCCCCGCTTCTCTGGCGCCGGTTTCTCCAAATTCTTTCGCTCCGCCGCCGTCCCTGCCGGTGCCGGTTTCGAAAGAAGAACTCATTCCATCTCATGATATGAGGCTTATAACTTAA

mRNA sequence

ATGGGTTGTTCAGAGTCTCGAAAGCGAAAGATCAAGAAGCCGCCACTCCCGCCGAGGGCTGCCAAATTTGCCCGCCGGCCGCCGCCGGAGATGAAAAGGTGCGAGGAGGAGCCGATGATAATTGACGTGGAAGAAGAAGACGTCTCACAGTCACAATTCAAGGACATTGTTCAACTCCTCACCGGCAGCCGCCACCGCCAACTTCCCCTTTTCTTCTCCGACGCTTCTTCCGATCATCAGGTGGGAATATTGTCGCCGACCCCCGCTTCTCTGGCGCCGGTTTCTCCAAATTCTTTCGCTCCGCCGCCGTCCCTGCCGGTGCCGGTTTCGAAAGAAGAACTCATTCCATCTCATGATATGAGGCTTATAACTTAA

Coding sequence (CDS)

ATGGGTTGTTCAGAGTCTCGAAAGCGAAAGATCAAGAAGCCGCCACTCCCGCCGAGGGCTGCCAAATTTGCCCGCCGGCCGCCGCCGGAGATGAAAAGGTGCGAGGAGGAGCCGATGATAATTGACGTGGAAGAAGAAGACGTCTCACAGTCACAATTCAAGGACATTGTTCAACTCCTCACCGGCAGCCGCCACCGCCAACTTCCCCTTTTCTTCTCCGACGCTTCTTCCGATCATCAGGTGGGAATATTGTCGCCGACCCCCGCTTCTCTGGCGCCGGTTTCTCCAAATTCTTTCGCTCCGCCGCCGTCCCTGCCGGTGCCGGTTTCGAAAGAAGAACTCATTCCATCTCATGATATGAGGCTTATAACTTAA

Protein sequence

MGCSESRKRKIKKPPLPPRAAKFARRPPPEMKRCEEEPMIIDVEEEDVSQSQFKDIVQLLTGSRHRQLPLFFSDASSDHQVGILSPTPASLAPVSPNSFAPPPSLPVPVSKEELIPSHDMRLIT

Homology

[Close]

BLAST of Tan0011384.1 vs. NCBI nr
Match: XP_038885909.1 (extensin-like [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-06
Identity = 52/113 (46.02%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 6   SRKRKIKKPPLPPRAAKFARRPPPEMKRCEEEPMIIDVEEEDVSQSQFKDIVQLLTGSRH 65
           +  RKIKKPP PP+ AK A   P  + R E EP II VE    +   FK IVQLLTG  +
Sbjct: 20  NNSRKIKKPPRPPKTAKTA--APSPVVRYENEPKIIKVE----TPQDFKYIVQLLTGDPN 79

Query: 66  RQLPLFFSDASSDHQ--------VGILSPTPASL-APVSPNSFAPPPSLPVPV 110
           R  P  +   S+DH          GILSPTP SL   V P++F P PS P P+
Sbjct: 80  RPPPQ-YPCTSNDHDPQPPDDRPQGILSPTPTSLPLLVYPDAFTPSPSPPPPL 125

[Close]

BLAST of Tan0011384.1 vs. NCBI nr
Match: KAA0058916.1 (hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa] >TYK23714.1 hypothetical protein E5676_scaffold1607G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 47/111 (42.34%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 6   SRKRKIKKPPLPPRAAKFARRPPPEMKRCEEEPMIIDVEEEDVSQSQFKDIVQLLTGSRH 65
           +  R IKKPPLP       +R PP +K  E EP II+V+    + + FK IVQLLTG  +
Sbjct: 20  NNSRNIKKPPLP------TKRAPPVVK-YELEPRIINVQ----TPTDFKYIVQLLTGDPN 79

Query: 66  RQLPLFFSDAS-----------SDHQVGILSPTPASLAP-VSPNSFAPPPS 105
           R  P++  +              DH  GILSP P SL P VSP  F P PS
Sbjct: 80  RPPPVYPCNCDHHDNYNNPQQPDDHPQGILSPAPTSLRPLVSPGDFTPFPS 119

[Close]

BLAST of Tan0011384.1 vs. ExPASy TrEMBL
Match: A0A5A7UXK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00250 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 47/111 (42.34%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 6   SRKRKIKKPPLPPRAAKFARRPPPEMKRCEEEPMIIDVEEEDVSQSQFKDIVQLLTGSRH 65
           +  R IKKPPLP       +R PP +K  E EP II+V+    + + FK IVQLLTG  +
Sbjct: 20  NNSRNIKKPPLP------TKRAPPVVK-YELEPRIINVQ----TPTDFKYIVQLLTGDPN 79

Query: 66  RQLPLFFSDAS-----------SDHQVGILSPTPASLAP-VSPNSFAPPPS 105
           R  P++  +              DH  GILSP P SL P VSP  F P PS
Sbjct: 80  RPPPVYPCNCDHHDNYNNPQQPDDHPQGILSPAPTSLRPLVSPGDFTPFPS 119

The following BLAST results are available for this feature:

BLAST of Tan0011384.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011384.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885909.1	7.1e-06	46.02	extensin-like [Benincasa hispida]	[more]
KAA0058916.1	5.1e-04	42.34	hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa] >TYK23714...	[more]

BLAST of Tan0011384.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXK4	2.5e-04	42.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0011384.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..124

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0011384	Tan0011384	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0011384.1-cds	Tan0011384.1-cds-LG11:9684259..9684633	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0011384.1-exon	Tan0011384.1-exon-LG11:9684259..9684633	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0011384.1	Tan0011384.1-protein	polypeptide