Tan0011000.1 (mRNA) Snake gourd v1

Overview


Name	Tan0011000.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	diffuse panbronchiolitis critical region protein 1
Location	LG01: 28544438 .. 28544925 (-)
Sequence length	417
RNA-Seq Expression	Tan0011000.1
Synteny	Tan0011000.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGTGGATGGCTCGGGTGACATGGGAGGACTTGGGACAGTGGTCAGTGGGAGGACGGTGGTAGTGGTAGAGGGCTCGGTGGCGGATGGTGGGAGGACGGTGGTAGTGGTGGAGGGATCAGTGGCAGATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCGGATTGTGGGAGGACGGTGGAAGTGGTGGAGGGATCAGTGGAAGATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCAAATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCAGATGGTGGGAGGACGGTGGGAGTAGTGGAGGGATCAGTGGCGGATTGTGGAGGACGGTGGGAGTGGTGGAGGGATCAATGGCGGATTGTGGGAGGACGGTGGGAGTGGTGAAGGGATCAGTGAGAGTGGGGGTTAGGTCATGTATGGGAGTGGTGACATCAGTGGCTTTATCCACTTCCATATTGTAA

mRNA sequence

ATGGAAGTAGTGGATGGCTCGGGTGACATGGGAGGACTTGGGACAGTGGTCAGTGGGAGGACGGTGGTAGTGGTAGAGGGCTCGGTGGCGGATGGTGGGAGGACGGTGGTAGTGGTGGAGGGATCAGTGGCAGATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCGGATTGTGGGAGGACGGTGGAAGTGGTGGAGGGATCAGTGGAAGATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCAAATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCAGATGGTGGGAGGACGGTGGGAGTAGTGGAGGGATCAGTGGCGGATTGTGGAGGACGGTGGGAGTGGTCATGTATGGGAGTGGTGACATCAGTGGCTTTATCCACTTCCATATTGTAA

Coding sequence (CDS)

ATGGAAGTAGTGGATGGCTCGGGTGACATGGGAGGACTTGGGACAGTGGTCAGTGGGAGGACGGTGGTAGTGGTAGAGGGCTCGGTGGCGGATGGTGGGAGGACGGTGGTAGTGGTGGAGGGATCAGTGGCAGATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCGGATTGTGGGAGGACGGTGGAAGTGGTGGAGGGATCAGTGGAAGATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCAAATGGTGGGAGGACGGTGGGAGTGGTGGAGGGATCGGTGGCAGATGGTGGGAGGACGGTGGGAGTAGTGGAGGGATCAGTGGCGGATTGTGGAGGACGGTGGGAGTGGTCATGTATGGGAGTGGTGACATCAGTGGCTTTATCCACTTCCATATTGTAA

Protein sequence

MEVVDGSGDMGGLGTVVSGRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGSVADCGRTVEVVEGSVEDGGRTVGVVEGSVANGGRTVGVVEGSVADGGRTVGVVEGSVADCGGRWEWSCMGVVTSVALSTSIL

Homology

[Close]

BLAST of Tan0011000.1 vs. NCBI nr
Match: CAD7265340.1 (unnamed protein product, partial [Timema shepardi])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 5    DGSGDMGG--LGTVVS-GRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGSVADCG 64
            +GSG  GG  +G   S G+ VV+ EG  A GG+ VV+ EGS A GG+ V + EGS A  G
Sbjct: 1150 EGSGASGGKFVGLEASGGKFVVLFEGLEASGGKCVVLFEGSEASGGKFVVLFEGSEASGG 1209

Query: 65   RTVEVVEGSVEDGGRTVGVVEGSVANGGRTVGVVEGSVADGGRTVGVVEGSVADCG 118
            + V + EGS   GG+ V + EGS A+GG+ V + EGS A GG+ V + EGS A  G
Sbjct: 1210 KFVVLFEGSEASGGKFVVLFEGSEASGGKFVVLFEGSEASGGKFVVLFEGSEASGG 1265

[Close]

BLAST of Tan0011000.1 vs. NCBI nr
Match: AAF97429.1 (VsaE2, partial [Mycoplasmopsis pulmonis])

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-06
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 18  SGRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGSVADCGRTVEVVEGSVEDGGRT 77
           SG+T    EGS ++ G+T    EGS ++ G+T G  EGS ++ G+T    EGS  + G+T
Sbjct: 24  SGKTKGQAEGSGSNSGKTQGQAEGSGSNSGKTQGQAEGSGSNSGKTQGQAEGSGSNSGKT 83

Query: 78  VGVVEGSVANGGRTVGVVEGSVADGGRTVGVVEGSVADCG 118
            G  EGS +N G+T G  EGS ++ G+T G  EGS ++ G
Sbjct: 84  QGQAEGSGSNSGKTQGQAEGSGSNSGKTQGQAEGSGSNSG 123

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BLAST of Tan0011000.1 vs. NCBI nr
Match: XP_012905976.1 (PREDICTED: diffuse panbronchiolitis critical region protein 1 [Mustela putorius furo])

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-06
Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 15  TVVSGRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGS-------VADCGRTVEVV 74
           T+ SG+T    +GS  D G+T    E S  D G+T GV++GS           G+T   +
Sbjct: 605 TLASGKTTRAPQGSTEDAGKTTGAPERSTEDAGKTTGVLKGSNNSGQETTLANGKTTRAL 664

Query: 75  EGSVEDGGRTVGVVEGS------VANGGRTVGVVEGSVADGGRTVGVVEGS 113
           EGS ED G+T G +EGS          G+T    EGS  D G+T G +EGS
Sbjct: 665 EGSTEDAGKTTGAIEGSKDHVGTTLASGKTTRAPEGSTEDAGKTTGALEGS 715

[Close]

BLAST of Tan0011000.1 vs. NCBI nr
Match: XP_019665102.2 (mucin-like protein 3 [Ailuropoda melanoleuca])

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-05
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 11  GGLGTVVSGRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGSVADCGRTVEVVEGS 70
           G   T+ + RT    EGS   GG+T    EGS   GG+T G  E S    G+T   +EGS
Sbjct: 75  GQNSTLSNRRTTRAPEGSKDHGGKTTGAPEGSKDHGGKTTGAPEVSKDHGGKTTGALEGS 134

Query: 71  VEDGGRTVGVVEGSVANG-------GRTVGVVEGSVADGGRTVGVVEGS 113
            ++GG+T GV+EGS  +G       G+  G  EGS   GG T G +EGS
Sbjct: 135 KDNGGKTTGVLEGSKDHGEKTTLANGKITGAPEGSKDHGGMTTGALEGS 183

[Close]

BLAST of Tan0011000.1 vs. NCBI nr
Match: MBN8722465.1 (hypothetical protein [Acidobacteria bacterium])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 42/121 (34.71%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 4   VDGS-GDMGGLGTVVSGRTVVV------VEGSVADGGRTVVVVEGSVADGGRTVGVVEGS 63
           VDG+  D+G L T V G    +      V+G++AD G+    V+G++AD G+    V+G+
Sbjct: 35  VDGAIADIGKLETKVDGAIADIGKLETKVDGAIADIGKLEAKVDGAIADIGKLEAKVDGA 94

Query: 64  VADCGRTVEVVEGSVEDGGRTVGVVEGSVANGGRTVGVVEGSVADGGRTVGVVEGSVADC 118
           +AD G+    V+G++ D G+    V+G++A+ G+    V+G++AD G+    V+G++AD 
Sbjct: 95  IADIGKLETKVDGAIADIGKLEAKVDGAIADIGKLEAKVDGAIADIGKLETKVDGAIADI 154

[Close]

BLAST of Tan0011000.1 vs. ExPASy TrEMBL
Match: A0A7R9B475 (Hypothetical protein OS=Timema shepardi OX=629360 GN=TSIB3V08_LOCUS9381 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 5    DGSGDMGG--LGTVVS-GRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGSVADCG 64
            +GSG  GG  +G   S G+ VV+ EG  A GG+ VV+ EGS A GG+ V + EGS A  G
Sbjct: 1150 EGSGASGGKFVGLEASGGKFVVLFEGLEASGGKCVVLFEGSEASGGKFVVLFEGSEASGG 1209

Query: 65   RTVEVVEGSVEDGGRTVGVVEGSVANGGRTVGVVEGSVADGGRTVGVVEGSVADCG 118
            + V + EGS   GG+ V + EGS A+GG+ V + EGS A GG+ V + EGS A  G
Sbjct: 1210 KFVVLFEGSEASGGKFVVLFEGSEASGGKFVVLFEGSEASGGKFVVLFEGSEASGG 1265

[Close]

BLAST of Tan0011000.1 vs. ExPASy TrEMBL
Match: M3YJN4 (Uncharacterized protein OS=Mustela putorius furo OX=9669 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 15  TVVSGRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGS-------VADCGRTVEVV 74
           T+ SG+T    +GS  D G+T    E S  D G+T GV++GS           G+T   +
Sbjct: 483 TLASGKTTRAPQGSTEDAGKTTGAPERSTEDAGKTTGVLKGSNNSGQETTLANGKTTRAL 542

Query: 75  EGSVEDGGRTVGVVEGS------VANGGRTVGVVEGSVADGGRTVGVVEGSVADCG 118
           EGS ED G+T G +EGS          G+T    EGS  D G+T G +EGS  D G
Sbjct: 543 EGSTEDAGKTTGAIEGSKDHVGTTLASGKTTRAPEGSTEDAGKTTGALEGSTEDAG 598

[Close]

BLAST of Tan0011000.1 vs. ExPASy TrEMBL
Match: Q9FCT4 (VsaE2 (Fragment) OS=Mycoplasma pulmonis OX=2107 GN=vsaE2 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 18  SGRTVVVVEGSVADGGRTVVVVEGSVADGGRTVGVVEGSVADCGRTVEVVEGSVEDGGRT 77
           SG+T    EGS ++ G+T    EGS ++ G+T G  EGS ++ G+T    EGS  + G+T
Sbjct: 24  SGKTKGQAEGSGSNSGKTQGQAEGSGSNSGKTQGQAEGSGSNSGKTQGQAEGSGSNSGKT 83

Query: 78  VGVVEGSVANGGRTVGVVEGSVADGGRTVGVVEGSVADCG 118
            G  EGS +N G+T G  EGS ++ G+T G  EGS ++ G
Sbjct: 84  QGQAEGSGSNSGKTQGQAEGSGSNSGKTQGQAEGSGSNSG 123

[Close]

BLAST of Tan0011000.1 vs. ExPASy TrEMBL
Match: A0A2U3WJV3 (diffuse panbronchiolitis critical region protein 1 OS=Odobenus rosmarus divergens OX=9708 GN=DPCR1 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 5   DGSGDMGGLGTVVSGRTVVVVEGSVADG-------GRTVVVVEGSVADGGRTVGVVEGS- 64
           +GS D G   T+ +G+T+   EG    G       G+T    EGS   GG+T G +EGS 
Sbjct: 265 EGSKDHGEKTTLANGKTIRASEGPKDHGEKTTLANGKTTRAPEGSKDHGGKTTGALEGSK 324

Query: 65  ------VADCGRTVEVVEGSVEDGGRTVGVVEGSVANGGRTVGVVEGSVADGGRT 106
                     G+T    EGS + GG+T G +EGS  +GG+T G +EGS   G +T
Sbjct: 325 DHGEKTTLASGKTTRAPEGSKDHGGKTTGALEGSKDHGGKTTGALEGSKDHGAKT 379

The following BLAST results are available for this feature:

BLAST of Tan0011000.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAD7265340.1	2.2e-08	47.41	unnamed protein product, partial [Timema shepardi]	[more]
AAF97429.1	4.6e-06	42.00	VsaE2, partial [Mycoplasmopsis pulmonis]	[more]
XP_012905976.1	6.1e-06	38.74	PREDICTED: diffuse panbronchiolitis critical region protein 1 [Mustela putorius ...	[more]
XP_019665102.2	6.7e-05	41.28	mucin-like protein 3 [Ailuropoda melanoleuca]	[more]
MBN8722465.1	1.1e-04	34.71	hypothetical protein [Acidobacteria bacterium]	[more]

BLAST of Tan0011000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7R9B475	1.1e-08	47.41	Hypothetical protein OS=Timema shepardi OX=629360 GN=TSIB3V08_LOCUS9381 PE=4 SV=...	[more]
M3YJN4	2.7e-07	38.79	Uncharacterized protein OS=Mustela putorius furo OX=9669 PE=4 SV=1	[more]
Q9FCT4	2.2e-06	42.00	VsaE2 (Fragment) OS=Mycoplasma pulmonis OX=2107 GN=vsaE2 PE=4 SV=1	[more]
A0A2U3WJV3	1.6e-04	37.39	diffuse panbronchiolitis critical region protein 1 OS=Odobenus rosmarus divergen...	[more]

BLAST of Tan0011000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0011000	Tan0011000	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0011000.1-exon	Tan0011000.1-exon-LG01:28544438..28544489	exon
Tan0011000.1-exon	Tan0011000.1-exon-LG01:28544561..28544925	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0011000.1-cds	Tan0011000.1-cds-LG01:28544438..28544489	CDS
Tan0011000.1-cds	Tan0011000.1-cds-LG01:28544561..28544925	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0011000.1	Tan0011000.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding