Tan0009522.1 (mRNA) Snake gourd v1

Overview


Name	Tan0009522.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Plant/protein
Location	LG08: 1858815 .. 1859682 (-)
Sequence length	868
RNA-Seq Expression	Tan0009522.1
Synteny	Tan0009522.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGCATGCTAAATTTGGTTTGGTTTAGAATAGGTATGAATGGTTAAATTAGACTTAATAAACTCAAAATTTAAAGGTTAAAAATTACAAGGTTAATTCCAAAAATCAATTTTGCATCTAATAAATTTTTAATTTTGTGTGTAATAAAAATTCAACTTTAAACCATATGTAAAATTTAAGTATATGTAATTGATGCATTGTTTGATATATTTATTACACAAAAAAAGTGGAATGAAAATGGACTATTATTATCATTTTCTTTTTCCGGATATAATTATAAAGTTTAAAAACCCAAAGGAAGCAACCTTTCCAATTCCCCCTTCGTCTTTCTTTCATCTTTGCCTTCCTTCCCGAGAAAATGACCACCAATCTAATTACCTTCCGCCCCATCGGAATCCGACCAACAGCCTCCTCCGCCGCTCACCGGAATCCCGATCCCATCCGCCATTGTAAGCCCTGGCGGAGACCTGCCCTGCCGAACTACATCATCAATGCCGGCGAGAAGCCAGAACCGGAGTTCGATTCGAGAGAGAAGGCGGCGGGATCTCGATTCTCTCCCGGTTGCTTCACGGCGGAGAAGGCGAAGCAACTCCGAATTATGACGACGAAATCGAATTCGTTTCACGACGCCATGTATCATTCCGCCATCGCATCACGCCTGGCTTCCGATTTCTCAAAGAACAACAATTAGCAGACTCTCCGATTCGAAATTGGCGGCGATTTCTCTGGTACCGATCTTGTAATCTCTTTGTTATTTGATTGCCGATGAATGCCTTGCCTTTATCTGCAATTTGTTATGTGTAAATTAGATTTGTGGAATAAGAATTAGGGGGGAAGGGGATGAGTTACAAAATCTGTGAATTTGGG

mRNA sequence

CATTGCATGCTAAATTTGGTTTGGTTTAGAATAGGTATGAATGGTTAAATTAGACTTAATAAACTCAAAATTTAAAGGTTAAAAATTACAAGGTTAATTCCAAAAATCAATTTTGCATCTAATAAATTTTTAATTTTGTGTGTAATAAAAATTCAACTTTAAACCATATGTAAAATTTAAGTATATGTAATTGATGCATTGTTTGATATATTTATTACACAAAAAAAGTGGAATGAAAATGGACTATTATTATCATTTTCTTTTTCCGGATATAATTATAAAGTTTAAAAACCCAAAGGAAGCAACCTTTCCAATTCCCCCTTCGTCTTTCTTTCATCTTTGCCTTCCTTCCCGAGAAAATGACCACCAATCTAATTACCTTCCGCCCCATCGGAATCCGACCAACAGCCTCCTCCGCCGCTCACCGGAATCCCGATCCCATCCGCCATTGTAAGCCCTGGCGGAGACCTGCCCTGCCGAACTACATCATCAATGCCGGCGAGAAGCCAGAACCGGAGTTCGATTCGAGAGAGAAGGCGGCGGGATCTCGATTCTCTCCCGGTTGCTTCACGGCGGAGAAGGCGAAGCAACTCCGAATTATGACGACGAAATCGAATTCGTTTCACGACGCCATGTATCATTCCGCCATCGCATCACGCCTGGCTTCCGATTTCTCAAAGAACAACAATTAGCAGACTCTCCGATTCGAAATTGGCGGCGATTTCTCTGGTACCGATCTTGTAATCTCTTTGTTATTTGATTGCCGATGAATGCCTTGCCTTTATCTGCAATTTGTTATGTGTAAATTAGATTTGTGGAATAAGAATTAGGGGGGAAGGGGATGAGTTACAAAATCTGTGAATTTGGG

Coding sequence (CDS)

ATGACCACCAATCTAATTACCTTCCGCCCCATCGGAATCCGACCAACAGCCTCCTCCGCCGCTCACCGGAATCCCGATCCCATCCGCCATTGTAAGCCCTGGCGGAGACCTGCCCTGCCGAACTACATCATCAATGCCGGCGAGAAGCCAGAACCGGAGTTCGATTCGAGAGAGAAGGCGGCGGGATCTCGATTCTCTCCCGGTTGCTTCACGGCGGAGAAGGCGAAGCAACTCCGAATTATGACGACGAAATCGAATTCGTTTCACGACGCCATGTATCATTCCGCCATCGCATCACGCCTGGCTTCCGATTTCTCAAAGAACAACAATTAG

Protein sequence

MTTNLITFRPIGIRPTASSAAHRNPDPIRHCKPWRRPALPNYIINAGEKPEPEFDSREKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN

Homology

[Close]

BLAST of Tan0009522.1 vs. NCBI nr
Match: XP_022998955.1 (uncharacterized protein LOC111493481 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 8.2e-30
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASS-AAHRNPDPIRHCKPWRRPALPNYIINAGEKPEPEFDSR-- 60
           MTTNL+ FRPIGIRP+AS+   HR PDP RH +PW +P  PN  I  G +P+P  DS   
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKPDPQRHYRPWWKPCPPNK-ITEGAQPDPNSDSNSN 60

Query: 61  --EKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN 111
             EKAAGSRFSPGC TAEKA+QLRIMT+K++ F D MYHS +ASRLASDFS   N
Sbjct: 61  LAEKAAGSRFSPGCLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKN 114

[Close]

BLAST of Tan0009522.1 vs. NCBI nr
Match: KAG6599416.1 (hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 68/112 (60.71%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASS-AAHRNPDPIRHCKPWRRPALPNYIINAGE-KPEPEFDSRE 60
           MTTNL+ FRPIGIRP+AS+   HR  DP RH +PW +P  PN I    +  P  +++S E
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNSAE 60

Query: 61  KAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN 111
           KAAGSRFSPG  TAEKA+QLRIMT+K++ F D MYHS +ASRLASDFS   N
Sbjct: 61  KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKN 112

[Close]

BLAST of Tan0009522.1 vs. NCBI nr
Match: KAG7030406.1 (hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASS-AAHRNPDPIRHCKPWRRPALPNYIINAGEKPEPEFDSR-- 60
           MTTNL+ FRPIGIRP+AS+   HR  DP RH +PW +P  PN  I  G +P P  DS   
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNK-ITEGAQPNPNSDSNSA 60

Query: 61  EKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN 111
           EKAAGSRFSPG  TAEKA+QLRIMT+K++ F D MYHS +ASRLASDFS   N
Sbjct: 61  EKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKN 112

[Close]

BLAST of Tan0009522.1 vs. NCBI nr
Match: KAA0061584.1 (hypothetical protein E6C27_scaffold41G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 69/113 (61.06%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTA---SSAAHRNPDPIRHCKPWRRPALPNYIINAGEKPEPEFDSR 60
           MTTNL+ FRPI I+ +A   SS+ HR P P R  +P  RP LP+YI    +  EP+ DS 
Sbjct: 1   MTTNLLIFRPIRIQQSATSGSSSGHRKPIPHRKGRPQWRPDLPDYI---SDNMEPDLDST 60

Query: 61  EKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN 111
           E+   S+ S GCFT EKAKQLRIMTTK+NSF D MYHSAIASRLASDFS  NN
Sbjct: 61  EEVTESQLSVGCFT-EKAKQLRIMTTKANSFWDGMYHSAIASRLASDFSNTNN 109

[Close]

BLAST of Tan0009522.1 vs. NCBI nr
Match: KAA8535043.1 (hypothetical protein F0562_030046 [Nyssa sinensis])

HSP 1 Score: 104.0 bits (258), Expect = 8.5e-19
Identity = 63/122 (51.64%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASSAAHRNPDPIRH---CKPWRRPAL-----PNYI--------- 60
           M  NL+ FRPIG+R  A+S  HR PD  R       W  P       P+YI         
Sbjct: 1   MAANLLPFRPIGVRACATS-GHRKPDSHRRKSSSSNWWTPLFGWSSEPDYIDSDNKTGTP 60

Query: 61  INAGEKPEPEFDSREKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLAS 106
             A  K E E D   K++ SRF+PGCFT EKAKQLR+MT ++ SFHDAMYHSAIASRLAS
Sbjct: 61  AKADSKSEAESDPEMKSSRSRFAPGCFTEEKAKQLRMMTKETASFHDAMYHSAIASRLAS 120

[Close]

BLAST of Tan0009522.1 vs. ExPASy TrEMBL
Match: A0A6J1KDY2 (uncharacterized protein LOC111493481 OS=Cucurbita maxima OX=3661 GN=LOC111493481 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASS-AAHRNPDPIRHCKPWRRPALPNYIINAGEKPEPEFDSR-- 60
           MTTNL+ FRPIGIRP+AS+   HR PDP RH +PW +P  PN  I  G +P+P  DS   
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKPDPQRHYRPWWKPCPPNK-ITEGAQPDPNSDSNSN 60

Query: 61  --EKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN 111
             EKAAGSRFSPGC TAEKA+QLRIMT+K++ F D MYHS +ASRLASDFS   N
Sbjct: 61  LAEKAAGSRFSPGCLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKN 114

[Close]

BLAST of Tan0009522.1 vs. ExPASy TrEMBL
Match: A0A5A7V2V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001490 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.5e-24
Identity = 69/113 (61.06%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTA---SSAAHRNPDPIRHCKPWRRPALPNYIINAGEKPEPEFDSR 60
           MTTNL+ FRPI I+ +A   SS+ HR P P R  +P  RP LP+YI    +  EP+ DS 
Sbjct: 1   MTTNLLIFRPIRIQQSATSGSSSGHRKPIPHRKGRPQWRPDLPDYI---SDNMEPDLDST 60

Query: 61  EKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN 111
           E+   S+ S GCFT EKAKQLRIMTTK+NSF D MYHSAIASRLASDFS  NN
Sbjct: 61  EEVTESQLSVGCFT-EKAKQLRIMTTKANSFWDGMYHSAIASRLASDFSNTNN 109

[Close]

BLAST of Tan0009522.1 vs. ExPASy TrEMBL
Match: A0A5J5AVW4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030046 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.1e-19
Identity = 63/122 (51.64%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASSAAHRNPDPIRH---CKPWRRPAL-----PNYI--------- 60
           M  NL+ FRPIG+R  A+S  HR PD  R       W  P       P+YI         
Sbjct: 1   MAANLLPFRPIGVRACATS-GHRKPDSHRRKSSSSNWWTPLFGWSSEPDYIDSDNKTGTP 60

Query: 61  INAGEKPEPEFDSREKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLAS 106
             A  K E E D   K++ SRF+PGCFT EKAKQLR+MT ++ SFHDAMYHSAIASRLAS
Sbjct: 61  AKADSKSEAESDPEMKSSRSRFAPGCFTEEKAKQLRMMTKETASFHDAMYHSAIASRLAS 120

[Close]

BLAST of Tan0009522.1 vs. ExPASy TrEMBL
Match: V4UP97 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009900mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASSAAHRNPDPIRH---CKPWRRPAL-----PNYIINAGEKPEP 60
           M  N++TFRP G++  A+S+ HRNPD  R       W  P        +Y I++  KPE 
Sbjct: 1   MAANILTFRPAGVQVYATSSGHRNPDGKRRKNASSNWWSPLFGWSSEADY-IDSESKPEN 60

Query: 61  EFDS---REKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDF 106
             +S    + +  SRF+PGCFT EKAKQLR+MT  + SFHDAMYHSAIASRLASDF
Sbjct: 61  RSESDLEAKSSRSSRFAPGCFTEEKAKQLRLMTKDTASFHDAMYHSAIASRLASDF 115

[Close]

BLAST of Tan0009522.1 vs. ExPASy TrEMBL
Match: F6HH66 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g04760 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.5e-18
Identity = 61/120 (50.83%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   MTTNLITFRPIGIRPTASSA-AHRNPDPIRHCKP---WRRPALPNYIINAGEKPEP---- 60
           M T+LI+FRPIGIR  A+S  +HR         P   W     P+YI    + P P    
Sbjct: 3   MATDLISFRPIGIRACAASCDSHRRSTSSNWWTPLFGWSPD--PDYIDPETKTPNPVAQS 62

Query: 61  --EFDSREKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFSKNNN 111
             E D   K + SR++PGCFT EKAKQLR++TT ++SFHDAMYHSAIASRLASDF K ++
Sbjct: 63  RSEQDLETKTSRSRYAPGCFTEEKAKQLRLVTTSTSSFHDAMYHSAIASRLASDFKKRSD 120

[Close]

BLAST of Tan0009522.1 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 61  AGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIASRLASDFS 107
           +G +F  GCFT EKAKQLR  T ++++FHD MYHSAIASRLASD +
Sbjct: 67  SGQKFRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDIT 112

[Close]

BLAST of Tan0009522.1 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 40  PNYIINAGEKPEPEFDSREKAAGSRFSPGCFTAEKAKQLRIMTTKSNSFHDAMYHSAIAS 99
           P+Y +N     E + D  EK    R    C T EKAKQLR  T ++++FHD MYHSAIAS
Sbjct: 43  PDY-VNKTVNLESDLDKAEK----RSLRCCLTEEKAKQLRRKTAEASTFHDVMYHSAIAS 102

Query: 100 RLASD 105
           RLASD
Sbjct: 103 RLASD 102

The following BLAST results are available for this feature:

BLAST of Tan0009522.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009522.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998955.1	8.2e-30	63.48	uncharacterized protein LOC111493481 [Cucurbita maxima]	[more]
KAG6599416.1	1.3e-27	60.71	hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030406.1	1.7e-27	62.83	hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0061584.1	2.0e-23	61.06	hypothetical protein E6C27_scaffold41G001490 [Cucumis melo var. makuwa]	[more]
KAA8535043.1	8.5e-19	51.64	hypothetical protein F0562_030046 [Nyssa sinensis]	[more]

BLAST of Tan0009522.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDY2	4.0e-30	63.48	uncharacterized protein LOC111493481 OS=Cucurbita maxima OX=3661 GN=LOC111493481...	[more]
A0A5A7V2V1	9.5e-24	61.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5J5AVW4	4.1e-19	51.64	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030046 PE=4 SV=1	[more]
V4UP97	2.7e-18	50.86	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009900mg PE=4 ...	[more]
F6HH66	4.5e-18	50.83	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g04760 PE=4 SV=...	[more]

BLAST of Tan0009522.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52720.1	6.9e-11	65.22	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15630.1	1.1e-08	52.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 1..108
None	No IPR available	PANTHER	PTHR34198:SF18	PROTEIN, PUTATIVE-RELATED	coord: 1..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0009522	Tan0009522	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0009522.1-three_prime_utr	Tan0009522.1-three_prime_utr-LG08:1858815..1858990	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0009522.1-exon	Tan0009522.1-exon-LG08:1858815..1859682	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0009522.1-cds	Tan0009522.1-cds-LG08:1858991..1859323	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0009522.1-five_prime_utr	Tan0009522.1-five_prime_utr-LG08:1859324..1859682	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0009522.1	Tan0009522.1-protein	polypeptide