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Tan0008223.2 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCGGCAGAGGCAGCGAAGTCAGTGATGCTGATCGGAATCGACGACAGCGACTACGCAATGGCGACTCTGGAGTGGACATTGGACCAATTTTTCTCTCAAACATTACGATTACATCCGTTCAAGCTCGTCGTGGTTCATGTGAAACCATCTCCCGACGTCTTCGTCAGCGTCTCCGGATCGGGAGGTAAGATCGATCTTCCTCCTCCTCTCTGCTAGTTACTTTCAAACATCAATCGATCCACCATCTATCATCGAGATTTTATAGAAGCGATTTGTGAAATTGAGAAACTATATATATAATCGGGAATTGCAGGATCGGCTGAAATTTACAAAGCTTTGGACGAAGATTTGAAGAGGAAATCTGCAAGAATTGTCGAGAATGCTAGAGAAATTTGCGCTGCGAGATCGGTAATCAACAATGGAGTTGAATTTCTTGATTTAGTTTACGAATCTGAGTCGTTTTGAGTTTAGAATTGAATGGATACGAACTTAAATCGATAAGAATGGGAGTTTAATTACAGGTTAGTGATGTTGAATTCGAGGTGGAAGAAGGAGATGCTAGGTATGTGCTGTGCGAAGCGGTGAATAAGCGCCGAGCTTCAGTGCTGGTGGTGGGAAGTCGTGGCCAAGGAGCTATCAAGGGGTACTTTCTCAAACCTTTTTTGTTTTTTAAGAAATCTCGTCAATTTTCTTTTTTTATAACCATTTTGTTTTTAGTTTTCCGTTTTTGAAAATTAAGCTTATTTTCA ATGGCAGCGGCAGAGGCAGCGAAGTCAGTGATGCTGATCGGAATCGACGACAGCGACTACGCAATGGCGACTCTGGAGTGGACATTGGACCAATTTTTCTCTCAAACATTACGATTACATCCGTTCAAGCTCGTCGTGGTTCATGTGAAACCATCTCCCGACGTCTTCGTCAGCGTCTCCGGATCGGGAGGATCGGCTGAAATTTACAAAGCTTTGGACGAAGATTTGAAGAGGAAATCTGCAAGAATTGTCGAGAATGCTAGAGAAATTTGCGCTGCGAGATCGGTTAGTGATGTTGAATTCGAGGTGGAAGAAGGAGATGCTAGGTATGTGCTGTGCGAAGCGGTGAATAAGCGCCGAGCTTCAGTGCTGGTGGTGGGAAGTCGTGGCCAAGGAGCTATCAAGGGGTACTTTCTCAAACCTTTTTTGTTTTTTAAGAAATCTCGTCAATTTTCTTTTTTTATAACCATTTTGTTTTTAGTTTTCCGTTTTTGAAAATTAAGCTTATTTTCA ATGGCAGCGGCAGAGGCAGCGAAGTCAGTGATGCTGATCGGAATCGACGACAGCGACTACGCAATGGCGACTCTGGAGTGGACATTGGACCAATTTTTCTCTCAAACATTACGATTACATCCGTTCAAGCTCGTCGTGGTTCATGTGAAACCATCTCCCGACGTCTTCGTCAGCGTCTCCGGATCGGGAGGATCGGCTGAAATTTACAAAGCTTTGGACGAAGATTTGAAGAGGAAATCTGCAAGAATTGTCGAGAATGCTAGAGAAATTTGCGCTGCGAGATCGGTTAGTGATGTTGAATTCGAGGTGGAAGAAGGAGATGCTAGGTATGTGCTGTGCGAAGCGGTGAATAAGCGCCGAGCTTCAGTGCTGGTGGTGGGAAGTCGTGGCCAAGGAGCTATCAAGGGGTACTTTCTCAAACCTTTTTTGTTTTTTAAGAAATCTCGTCAATTTTCTTTTTTTATAACCATTTTGTTTTTAGTTTTCCGTTTTTGA MAAAEAAKSVMLIGIDDSDYAMATLEWTLDQFFSQTLRLHPFKLVVVHVKPSPDVFVSVSGSGGSAEIYKALDEDLKRKSARIVENAREICAARSVSDVEFEVEEGDARYVLCEAVNKRRASVLVVGSRGQGAIKGYFLKPFLFFKKSRQFSFFITILFLVFRF Homology
BLAST of Tan0008223.2 vs. ExPASy Swiss-Prot
Match: Q8LGG8 (Universal stress protein A-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g01520 PE=1 SV=2) HSP 1 Score: 46.6 bits (109), Expect = 3.1e-04 Identity = 34/115 (29.57%), Postives = 55/115 (47.83%), Query Frame = 0
BLAST of Tan0008223.2 vs. NCBI nr
Match: XP_038899901.1 (universal stress protein Slr1101-like isoform X2 [Benincasa hispida]) HSP 1 Score: 208.8 bits (530), Expect = 3.6e-50 Identity = 107/134 (79.85%), Postives = 117/134 (87.31%), Query Frame = 0
BLAST of Tan0008223.2 vs. NCBI nr
Match: XP_038899900.1 (universal stress protein Slr1101-like isoform X1 [Benincasa hispida]) HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49 Identity = 108/137 (78.83%), Postives = 118/137 (86.13%), Query Frame = 0
BLAST of Tan0008223.2 vs. NCBI nr
Match: XP_022953724.1 (uncharacterized protein LOC111456170 [Cucurbita moschata]) HSP 1 Score: 205.3 bits (521), Expect = 4.0e-49 Identity = 106/136 (77.94%), Postives = 117/136 (86.03%), Query Frame = 0
BLAST of Tan0008223.2 vs. NCBI nr
Match: XP_008451578.1 (PREDICTED: universal stress protein in QAH/OAS sulfhydrylase 3'region-like isoform X4 [Cucumis melo]) HSP 1 Score: 202.6 bits (514), Expect = 2.6e-48 Identity = 102/137 (74.45%), Postives = 117/137 (85.40%), Query Frame = 0
BLAST of Tan0008223.2 vs. NCBI nr
Match: XP_022991249.1 (uncharacterized protein LOC111487962 [Cucurbita maxima]) HSP 1 Score: 202.6 bits (514), Expect = 2.6e-48 Identity = 104/136 (76.47%), Postives = 118/136 (86.76%), Query Frame = 0
BLAST of Tan0008223.2 vs. ExPASy TrEMBL
Match: A0A6J1GQH8 (uncharacterized protein LOC111456170 OS=Cucurbita moschata OX=3662 GN=LOC111456170 PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 2.0e-49 Identity = 106/136 (77.94%), Postives = 117/136 (86.03%), Query Frame = 0
BLAST of Tan0008223.2 vs. ExPASy TrEMBL
Match: A0A6J1JUA8 (uncharacterized protein LOC111487962 OS=Cucurbita maxima OX=3661 GN=LOC111487962 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48 Identity = 104/136 (76.47%), Postives = 118/136 (86.76%), Query Frame = 0
BLAST of Tan0008223.2 vs. ExPASy TrEMBL
Match: A0A1S3BR75 (universal stress protein in QAH/OAS sulfhydrylase 3'region-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103492816 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48 Identity = 102/137 (74.45%), Postives = 117/137 (85.40%), Query Frame = 0
BLAST of Tan0008223.2 vs. ExPASy TrEMBL
Match: A0A1S3BSX6 (universal stress protein in QAH/OAS sulfhydrylase 3'region-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492816 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 6.3e-48 Identity = 103/140 (73.57%), Postives = 118/140 (84.29%), Query Frame = 0
BLAST of Tan0008223.2 vs. ExPASy TrEMBL
Match: A0A5D3D312 (Universal stress protein A-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00600 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 1.5e-46 Identity = 103/152 (67.76%), Postives = 118/152 (77.63%), Query Frame = 0
BLAST of Tan0008223.2 vs. TAIR 10
Match: AT2G47710.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30 Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 0
BLAST of Tan0008223.2 vs. TAIR 10
Match: AT5G49050.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT2G47710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 78.2 bits (191), Expect = 6.9e-15 Identity = 42/118 (35.59%), Postives = 69/118 (58.47%), Query Frame = 0
BLAST of Tan0008223.2 vs. TAIR 10
Match: AT1G09740.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14 Identity = 50/138 (36.23%), Postives = 75/138 (54.35%), Query Frame = 0
BLAST of Tan0008223.2 vs. TAIR 10
Match: AT3G11930.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 71.6 bits (174), Expect = 6.5e-13 Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 0
BLAST of Tan0008223.2 vs. TAIR 10
Match: AT3G11930.3 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 71.6 bits (174), Expect = 6.5e-13 Identity = 47/139 (33.81%), Postives = 76/139 (54.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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