Tan0008206.1 (mRNA) Snake gourd v1

Overview


Name	Tan0008206.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	2-iminobutanoate/2-iminopropanoate deaminase-like
Location	LG01: 18192419 .. 18196425 (+)
Sequence length	1284
RNA-Seq Expression	Tan0008206.1
Synteny	Tan0008206.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCAAATGAACGTTGAGTTCATCGAGCGACTCACTACGAACTGTGAGAGAAGGAATAATTCAAGTCAAGAGGCACAAATACATAATTATTAATAATAATAATAATATGGCTTGGTGCGCTGCTCAGAGCTTCCAAATTCCGGCCTCCGACGTCATTTCACGGCGGCGCACCGCCACTCCGTCGGCCGGCGGCGCTGTGTCCATGTGGCGGCGGCCGTCGTCTGTTTCAAACCGCCAAATGTCCTTCAAATGCCTTGCCATTTCCGAGTGTACTGGTACTAATCATATTCCCCTTTTTCCTTCACTCTCTTTCTGTTTGGTTCATCACAAAATTCAAAATTCTATCAAACAAAACAGATCGCTATTATATTCTCTTCTTAGTTCGAGTGCAAATTTAGAACCTCTAACTTTTAGATCGAGAGCTTAACCAACGCGGGTCCGATTTATAGTTTTTAAATGCTTTAAAATCTTGCCTTTTTCTTCGCCGTTACATTTCAGAACTTGGTGGTTTGGTATTGATTGGTAATTTGCTTTTTCTTTCCTTCTTGTTCAAGTAAGAAAATTGAAATGCTATTGTTAATGGAGTTCTTCTCATCTTAAATTTCACAACCCTCATTGTTCTGCAAAAATAAGTAAAATGAAAATTATTTACTTAATTTTATCCTTTAATTAATTGTAATTGTTCAATTTTTCAATCCTTTTAATTTGTTTAACATGGATGGATGGAGTAATATATCAAACAAATTAATTCCACTTAAATTATAAGTTTAGCTTCCGAACTTTAAAAAATATTTAATGGGTCCTTAAATTTTATTCGATACATGAATTTTAAAATATCAAATAAATCGTAAAACTTATTAGACACAAAATTAAAAGTTTAGACACATGTTTAGATATTTTTTAAAGTTTAAGATATTTATTAGACACGAAATTAAAAGTGTTGGAAAATTATTTTACACACTTTAAAATTTAGAGGTTAAAGATCTATTAGATGCTTTCTACAATTTCGAGACCTATGAAAGACATCATATGAAAGTTCGAGAACTAAATATGTAATTTAATCAACAAATATTAAATGTCGATTTAATTTAATGCTAAAACATATAATTAAAATTTAGATAATAAATGAAGGAAAAAAAAGGTTAAATTATAAAAAATACTCCTCAATTATGAGGTTGGTTTTAATTATGACCATCAACTTTGAAATGTTTCATTTTTAACCTTTGAACTTTGAAATTTATTTCAAAATAACCTTTAAAGATTTTTTTTTTGTTAAATTTATGGATGAAAAATGGCGTATTTGCATATGTTTTAATTTTTTTTTTCAACGTATATGTTCAAATATGTTCATATAAGCGACAATACAAATGCAAATACAATGTTTTCTATCTATGAGTTTTATGACAAAACGCTTTCAAGGGTTATTTTGAAACAAACTTTAAAATTTAAGAATTAAAATGAAAATTTATAAATTTTAGAGGTATAATTGAACCCAACCCTACCGTTTAGAGGTATTTTTGATAATTTAACCCAAAAAAAAGAAGAATCATATTTTACCAGTGGGATTCCCTGCATCCAAGTGCAATCACATTTCCATCCTTTCCATTAGTCTAAAACTTTTTTTAAAAAAAAGAAAATTAGATTCATTTTTTACCTCGAACTCCGATAAAAGGTATATTTGGTTAAAATTTGTGCAAGACTTAATTTTTATTGAAGCGAATGAGTTGTTTTGCTAGAGATTTTTAAGGTCTGTGAAAATTATTGGGTAGATAAATGTAGACTAATGAAAGTTGAACAAATGTAAAAGTTGATGTTGCATTTGATGATATTAAAAGTTTAGGATAAAAATTAAGGGTAAGAATTGTTTTTTTGATTTTTTTCTTCTATGATATATATTTTTTCACTCCTTAATATCTTCTGTGACAGGTATCATAGCTATTGTCACGGACAAGGCTCCAAAAGCATTAGGACCATATTCTCAGGGTATCATAGCCAACAAATTTGTCTTTGTGTCGGGCTCCCTAGGTCTAATGCCTAAGGTAGCTTCATCACTTTATGATTGTTATTTATCGTTCATATTGCTTTACGGATAAATTAAGAAGTTGTTTGGAACACTCAATAAGTATATAATTTGTATTTATGATATAAAGTTATTTAGTTTGAAATTATAATAATATGTATTTACACTACATACTATTATAACTTACGTTCCAAATAACTTCTAAGTGATTTTTTAAAAGTCTTACTCGAGCGTAACTCAAGTGATTATGTCTCATTACCTGTTTTATAGAGTTACCATTTTGATCTTTGTATCTTGAGTTTTATTCTATTTTGATCTCTGTAGTTTCAAATACCCCATTTTAGTTCTCATACTTTCAAAAATCTTAAAATTAACTATTAGTTTATTGTTGTTTTTTCTTAAAAAATTAGTCTTTCTTGTACCTTTTCTTGTATCAAATTATTATTATTATTATTATTATTTAACTATTTTTGACAAAACTTACCTTCAATTCAAACTTATCATGGAAACCAATTTAAAACTTTATTGAAAATACATATACTAAAATTAGACACTCGAAAGTACGGAAACAAAAAAAAAAATCAAACTACAAGACTAAAATAGTATTTTAATCCGCTTTTTATGGTGTCTAATTGAGTGTATGTTTATGGTTGAATACAGACAGGGGAATTAATCTCAGATGATATTGCAGAACAAACTGAGCAGGTTTTTTTTTTTTTGTTCATTAGATTCTATTGTCCTTTTTGTAGACCAAATTTCTGAGCTGAAAATTAAATTTTCTAAGCAAATGAAATATTATGCAGGCCCTAAAAAATGTAGGTGCAATATTGAGAGCTGGAGGTGCTGACTATAATAAAGTGGTTAAGACAACTATTATGTATGAAATCTTTATGACCTTTTAATATATTGAGAGTTATTTTGAAAGCTGTTTTGAAAAATCTTTATGATCTTTTTGAAAAACAGATCCCCATTTTTATTTTTCCAAAGATTTACAATTCTAATTTCTTCACAATTCTTTCTTGTAGGTTGGCTGATGTAGCAGACTTTGCATTAGTAAATGACATTTATGCTAAGTGTAAGTTCTTTTCAACTGAATCTCTAATATCTTTCATATTTTTATAATTCTTTTTTTTTTTCAAATACAATATAATTTTTTTTGACAATGGTGATTCCATTATTTTGCTTTGATATGTTAATTTTTGTTTTAAATACATTAAAATTTCTAATATTTTAAGTAGTATATTGTTATTTGTTCTTCAGACTTTTCGAACGACCCTGCACCAGCTCGATCGACATTTCAAGCTGGAGCATTGCCCAAAAATGCTAAGATCGAAATCGATGCAATAGCTGTGATTTAAACTATAGTATAATTTCAGGCTCCTAATTTTCCAAGGCATCATCATAAATTTAATAAGTTGAATTAAGATAGCTAATTAATCACAGGAACATCCCAAATTCAGTTTGGTTTGTGTAATATTACTTGAGGCTTTCTTGTTACAACAATATTGTAATCACTTCACTCTTCCCACTTGCTTTTTAAGCTGTGGAAATAGAGAGCTGATATAATATATATTTTGTCTTGGATATGTGGCGATGTCCTTTTCATTATGCTGCCATGGTTATTACCTGAGGCTTCCTTGTTACAACAATATTCTAATTATACTAAAACAATTTAGCACTCAAAACAAACCATATGACTTATAGGTACTTTTCTAGCACTAAAAGTCGAAGAAACATCCCTAAAAATTCTATCACTGTGCTCATGCCAAAGATACTAAAAGAAAAGAAGGCGCGGTTCATGGCCAATCAAAAAGTCTTCGTGCTAGCATAGAAGGGATGTCCCACAAAAACTAAAGCAAGTATGTCAAAGATAAGAATCCGACAATACTAAGGACCAACCAAAAGCTTCCTTCATAATTGAGCAATACTGAGATGCAAAAAGAACAATGAACAAAAAGATGGCTAGGACATTTTGCACTTGAACAAC

mRNA sequence

GCGCAAATGAACGTTGAGTTCATCGAGCGACTCACTACGAACTGTGAGAGAAGGAATAATTCAAGTCAAGAGGCACAAATACATAATTATTAATAATAATAATAATATGGCTTGGTGCGCTGCTCAGAGCTTCCAAATTCCGGCCTCCGACGTCATTTCACGGCGGCGCACCGCCACTCCGTCGGCCGGCGGCGCTGTGTCCATGTGGCGGCGGCCGTCGTCTGTTTCAAACCGCCAAATGTCCTTCAAATGCCTTGCCATTTCCGAGTGTACTGGTATCATAGCTATTGTCACGGACAAGGCTCCAAAAGCATTAGGACCATATTCTCAGGGTATCATAGCCAACAAATTTGTCTTTGTGTCGGGCTCCCTAGGTCTAATGCCTAAGACAGGGGAATTAATCTCAGATGATATTGCAGAACAAACTGAGCAGGCCCTAAAAAATGTAGGTGCAATATTGAGAGCTGGAGGTGCTGACTATAATAAAGTGGTTAAGACAACTATTATGTTGGCTGATGTAGCAGACTTTGCATTAGTAAATGACATTTATGCTAAGTACTTTTCGAACGACCCTGCACCAGCTCGATCGACATTTCAAGCTGGAGCATTGCCCAAAAATGCTAAGATCGAAATCGATGCAATAGCTGTGATTTAAACTATAGTATAATTTCAGGCTCCTAATTTTCCAAGGCATCATCATAAATTTAATAAGTTGAATTAAGATAGCTAATTAATCACAGGAACATCCCAAATTCAGTTTGGTTTGTGTAATATTACTTGAGGCTTTCTTGTTACAACAATATTGTAATCACTTCACTCTTCCCACTTGCTTTTTAAGCTGTGGAAATAGAGAGCTGATATAATATATATTTTGTCTTGGATATGTGGCGATGTCCTTTTCATTATGCTGCCATGGTTATTACCTGAGGCTTCCTTGTTACAACAATATTCTAATTATACTAAAACAATTTAGCACTCAAAACAAACCATATGACTTATAGGTACTTTTCTAGCACTAAAAGTCGAAGAAACATCCCTAAAAATTCTATCACTGTGCTCATGCCAAAGATACTAAAAGAAAAGAAGGCGCGGTTCATGGCCAATCAAAAAGTCTTCGTGCTAGCATAGAAGGGATGTCCCACAAAAACTAAAGCAAGTATGTCAAAGATAAGAATCCGACAATACTAAGGACCAACCAAAAGCTTCCTTCATAATTGAGCAATACTGAGATGCAAAAAGAACAATGAACAAAAAGATGGCTAGGACATTTTGCACTTGAACAAC

Coding sequence (CDS)

ATGGCTTGGTGCGCTGCTCAGAGCTTCCAAATTCCGGCCTCCGACGTCATTTCACGGCGGCGCACCGCCACTCCGTCGGCCGGCGGCGCTGTGTCCATGTGGCGGCGGCCGTCGTCTGTTTCAAACCGCCAAATGTCCTTCAAATGCCTTGCCATTTCCGAGTGTACTGGTATCATAGCTATTGTCACGGACAAGGCTCCAAAAGCATTAGGACCATATTCTCAGGGTATCATAGCCAACAAATTTGTCTTTGTGTCGGGCTCCCTAGGTCTAATGCCTAAGACAGGGGAATTAATCTCAGATGATATTGCAGAACAAACTGAGCAGGCCCTAAAAAATGTAGGTGCAATATTGAGAGCTGGAGGTGCTGACTATAATAAAGTGGTTAAGACAACTATTATGTTGGCTGATGTAGCAGACTTTGCATTAGTAAATGACATTTATGCTAAGTACTTTTCGAACGACCCTGCACCAGCTCGATCGACATTTCAAGCTGGAGCATTGCCCAAAAATGCTAAGATCGAAATCGATGCAATAGCTGTGATTTAA

Protein sequence

MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPSSVSNRQMSFKCLAISECTGIIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAILRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEIDAIAVI

Homology

[Close]

BLAST of Tan0008206.1 vs. ExPASy Swiss-Prot
Match: Q94JQ4 (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RIDA PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-40
Identity = 99/192 (51.56%), Postives = 129/192 (67.19%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDV-ISRRRTATP--SAG------GAVSMWRRPSSVSNRQMSFKCLA 60
           M W   +S   P  D+  + R T TP  +AG        VS++R    +S+R   F  L+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFR----MSSRSPPFASLS 60

Query: 61  ISECTGIIAIV-TDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQA 120
           +S  +    +V T+KAP ALGPYSQ I AN  VF+SG LGL+P+TG+ +S+ + +QTEQ 
Sbjct: 61  VSASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQV 120

Query: 121 LKNVGAILRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPK 180
           LKN+G IL+A GADY+ VVKTTIMLAD+ADF  VN+IYAKYF   P+PARST+Q  ALP 
Sbjct: 121 LKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFP-APSPARSTYQVAALPL 180

Query: 181 NAKIEIDAIAVI 183
           NAKIEI+ IA +
Sbjct: 181 NAKIEIECIATL 187

[Close]

BLAST of Tan0008206.1 vs. ExPASy Swiss-Prot
Match: P52758 (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-31
Identity = 60/121 (49.59%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 61  IVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAILRA 120
           I T KAP A+GPYSQ ++ ++ +++SG +G+ P +G+L+S  +AE+ +QALKN+G IL+A
Sbjct: 9   ISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKA 68

Query: 121 GGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEIDAIA 180
            G D+  VVKTT++LAD+ DF  VN+IY +YF ++  PAR+ +Q  ALPK ++IEI+A+A
Sbjct: 69  AGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSN-FPARAAYQVAALPKGSRIEIEAVA 128

Query: 181 V 182
           +
Sbjct: 129 I 128

[Close]

BLAST of Tan0008206.1 vs. ExPASy Swiss-Prot
Match: Q10121 (RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 133.3 bits (334), Expect = 2.8e-30
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 61  IVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAILRA 120
           I +  AP A+GPYSQ + A   +++SGSLGL PKTG+L  + + EQT Q+LKN+G +L+A
Sbjct: 44  ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDL-KEGVVEQTHQSLKNLGEVLKA 103

Query: 121 GGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEIDAIA 180
            GADY  VVKTT++L ++ADFA VN++Y +YF + P PAR+ +Q  ALPK   +EI+A+A
Sbjct: 104 AGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKS-PYPARAAYQVAALPKGGLVEIEAVA 162

Query: 181 V 182
           +
Sbjct: 164 I 162

[Close]

BLAST of Tan0008206.1 vs. ExPASy Swiss-Prot
Match: Q3T114 (2-iminobutanoate/2-iminopropanoate deaminase OS=Bos taurus OX=9913 GN=RIDA PE=2 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-30
Identity = 59/121 (48.76%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 61  IVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAILRA 120
           I T KAP A+GPYSQ ++ ++ +++SG LG+ P +G+L+   +AE+ +QAL N+G IL+A
Sbjct: 9   ISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKA 68

Query: 121 GGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEIDAIA 180
            G D+  VVK T++LAD+ DF+ VND+Y +YF +   PAR+ +Q  ALPK  ++EI+AIA
Sbjct: 69  AGCDFTNVVKATVLLADINDFSTVNDVYKQYFQSS-FPARAAYQVAALPKGGRVEIEAIA 128

Query: 181 V 182
           V
Sbjct: 129 V 128

[Close]

BLAST of Tan0008206.1 vs. ExPASy Swiss-Prot
Match: P52759 (2-iminobutanoate/2-iminopropanoate deaminase OS=Rattus norvegicus OX=10116 GN=Rida PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-30
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 61  IVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAILRA 120
           I T KAP A+G YSQ ++ ++ ++VSG +G+ P +G+L+   +AE+ +QALKN+G IL+A
Sbjct: 9   ISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKA 68

Query: 121 GGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEIDAIA 180
            G D+  VVKTT++LAD+ DF  VN+IY  YF  +  PAR+ +Q  ALPK ++IEI+AIA
Sbjct: 69  AGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGN-LPARAAYQVAALPKGSRIEIEAIA 128

Query: 181 V 182
           V
Sbjct: 129 V 128

[Close]

BLAST of Tan0008206.1 vs. NCBI nr
Match: XP_023553271.1 (2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.7 bits (735), Expect = 6.9e-74
Identity = 145/185 (78.38%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C+A SFQIPA++VISR RT TPS G +VS+WRRPS   S+SNR MSFKC AIS+C  
Sbjct: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPSSIPSISNRNMSFKCHAISKCRD 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           II I TDKAP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISDD+ EQT QALKN+GAI
Sbjct: 61  IIPIETDKAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDDVGEQTMQALKNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           LRAGGADYN+VVKTTIMLADVADFALVN+IYA+YFS  P PARSTFQ GALPKNAKIEID
Sbjct: 121 LRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSKQPFPARSTFQVGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIA++
Sbjct: 181 AIALV 185

[Close]

BLAST of Tan0008206.1 vs. NCBI nr
Match: XP_023552960.1 (2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73
Identity = 145/185 (78.38%), Postives = 163/185 (88.11%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C A +FQIPAS+VISR RT TPS G AVS+WRRPS   S+SNR MSFKC AISEC  
Sbjct: 1   MAYCTAHTFQIPASNVISRPRTVTPSVGAAVSLWRRPSSIPSISNRNMSFKCHAISECDD 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           I  I T++AP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISD + +QTEQALKN+GAI
Sbjct: 61  ITPIATEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTEQALKNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           L+AGG DYN+VVKTTIMLADVADFALVN+IYAKYFS  PAPARSTFQAGALPKNAKIEID
Sbjct: 121 LKAGGVDYNRVVKTTIMLADVADFALVNEIYAKYFSEYPAPARSTFQAGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIAV+
Sbjct: 181 AIAVV 185

[Close]

BLAST of Tan0008206.1 vs. NCBI nr
Match: XP_022985268.1 (2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita maxima])

HSP 1 Score: 283.5 bits (724), Expect = 1.3e-72
Identity = 144/185 (77.84%), Postives = 162/185 (87.57%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C A +FQIPAS+VISR RT TPS G AVS+WRRPS   S+SNR MSFKC AIS+C  
Sbjct: 1   MAYCTAHTFQIPASNVISRPRTVTPSVGAAVSLWRRPSSIPSISNRNMSFKCHAISKCDD 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           I  I T++AP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISD + EQ EQALKN+GAI
Sbjct: 61  ITTIETNEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGEQAEQALKNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           L+AGGADYN+VVKTTIMLADVADFALVN IYA+YFS  PAPARSTFQAGALPKNAKIEID
Sbjct: 121 LKAGGADYNRVVKTTIMLADVADFALVNQIYARYFSEYPAPARSTFQAGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIAV+
Sbjct: 181 AIAVV 185

[Close]

BLAST of Tan0008206.1 vs. NCBI nr
Match: KAG6577421.1 (Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 141/185 (76.22%), Postives = 163/185 (88.11%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C+A SFQIPA++VISR RT TPS G +VS+WRRPS   S+SNR MSFKC AIS+C  
Sbjct: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPSSIPSISNRNMSFKCHAISKCRD 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           II I T +AP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISD + +QTEQAL+N+GAI
Sbjct: 61  IIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTEQALRNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           LRAGGADYN+VVKTTIMLADVADFALVN+IYA+YFS  P PARSTFQ GALPKNAKIEID
Sbjct: 121 LRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQIGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIA++
Sbjct: 181 AIALV 185

[Close]

BLAST of Tan0008206.1 vs. NCBI nr
Match: KAG7015495.1 (Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 141/185 (76.22%), Postives = 163/185 (88.11%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C+A SFQIPA++VISR RT TPS G +VS+WRRPS   S+SNR MSFKC AIS+C  
Sbjct: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPSSIPSISNRDMSFKCHAISKCRD 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           II I T +AP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISD + +QTEQAL+N+GAI
Sbjct: 61  IILIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTEQALRNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           LRAGGADYN+VVKTTIMLADVADFALVN+IYA+YFS  P PARSTFQ GALPKNAKIEID
Sbjct: 121 LRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQIGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIA++
Sbjct: 181 AIALV 185

[Close]

BLAST of Tan0008206.1 vs. ExPASy TrEMBL
Match: A0A6J1JD57 (2-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita maxima OX=3661 GN=LOC111483310 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.3e-73
Identity = 144/185 (77.84%), Postives = 162/185 (87.57%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C A +FQIPAS+VISR RT TPS G AVS+WRRPS   S+SNR MSFKC AIS+C  
Sbjct: 1   MAYCTAHTFQIPASNVISRPRTVTPSVGAAVSLWRRPSSIPSISNRNMSFKCHAISKCDD 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           I  I T++AP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISD + EQ EQALKN+GAI
Sbjct: 61  ITTIETNEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGEQAEQALKNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           L+AGGADYN+VVKTTIMLADVADFALVN IYA+YFS  PAPARSTFQAGALPKNAKIEID
Sbjct: 121 LKAGGADYNRVVKTTIMLADVADFALVNQIYARYFSEYPAPARSTFQAGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIAV+
Sbjct: 181 AIAVV 185

[Close]

BLAST of Tan0008206.1 vs. ExPASy TrEMBL
Match: A0A6J1F0U9 (2-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita moschata OX=3662 GN=LOC111438474 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 139/185 (75.14%), Postives = 162/185 (87.57%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C + +FQIPAS+VISR RT TPS G AVS+WRRPS   S+SNR MSFKC AIS+C  
Sbjct: 1   MAYCTSHTFQIPASNVISRPRTVTPSVGAAVSLWRRPSSIPSISNRNMSFKCHAISKCND 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           I  I+T++AP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISD + +QT QALKN+GAI
Sbjct: 61  ITPIITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           L+AGGADYN+VVKTTIMLADVADFALVN+IYA+YFS  P PARSTFQ GALPKNAKIEID
Sbjct: 121 LKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIA++
Sbjct: 181 AIALV 185

[Close]

BLAST of Tan0008206.1 vs. ExPASy TrEMBL
Match: A0A6J1EVW2 (2-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita moschata OX=3662 GN=LOC111438479 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.9e-71
Identity = 139/185 (75.14%), Postives = 161/185 (87.03%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRPS---SVSNRQMSFKCLAISECTG 60
           MA+C+A SFQIPA++VISR RT TPS G +VS+WRRPS   S+SNR MSFKC AIS+C  
Sbjct: 1   MAYCSANSFQIPATNVISRPRTVTPSVGASVSLWRRPSSIPSISNRNMSFKCHAISKCRD 60

Query: 61  IIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVGAI 120
           II I T +AP+ALGPYSQGIIAN F+FVSGSLGL+P+TGELISD + +Q  QAL+N+GAI
Sbjct: 61  IIPIETKEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQPRQALRNIGAI 120

Query: 121 LRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIEID 180
           LRAGGADYN+VVKTTIMLADVADFALVN+IYA+YFS  P PARSTFQ GALPKNAKIEID
Sbjct: 121 LRAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEQPFPARSTFQVGALPKNAKIEID 180

Query: 181 AIAVI 183
           AIA++
Sbjct: 181 AIALV 185

[Close]

BLAST of Tan0008206.1 vs. ExPASy TrEMBL
Match: A0A5D3BWQ5 (Ribonuclease UK114-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00100 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.2e-69
Identity = 143/187 (76.47%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRP----SSVSNRQMSFKCLAISEC- 60
           MA  AA + QIPAS  I+R R+ TPSAG AVS+WRRP     S+S+RQMSFKCLAIS+C 
Sbjct: 1   MAMSAAHTLQIPASTAITRGRSFTPSAGTAVSLWRRPLPAIPSISSRQMSFKCLAISKCT 60

Query: 61  TGIIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVG 120
           T I  I TD AP+ALGPYSQGIIAN  ++VSGSLGL+PKTGELISDD+ EQTEQALKNVG
Sbjct: 61  TEIKGIATDNAPEALGPYSQGIIANNILYVSGSLGLIPKTGELISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIE 180
           AILRAGGADY++VVKTTIMLA+VADF LVN+IYAKYF N PAPARSTF AGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVVKTTIMLANVADFTLVNEIYAKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVI 183
           IDAIAV+
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of Tan0008206.1 vs. ExPASy TrEMBL
Match: A0A1S3CJ80 (ribonuclease UK114-like OS=Cucumis melo OX=3656 GN=LOC103501582 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.2e-69
Identity = 143/187 (76.47%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDVISRRRTATPSAGGAVSMWRRP----SSVSNRQMSFKCLAISEC- 60
           MA  AA + QIPAS  I+R R+ TPSAG AVS+WRRP     S+S+RQMSFKCLAIS+C 
Sbjct: 1   MAMSAAHTLQIPASTAITRGRSFTPSAGTAVSLWRRPLPAIPSISSRQMSFKCLAISKCT 60

Query: 61  TGIIAIVTDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQALKNVG 120
           T I  I TD AP+ALGPYSQGIIAN  ++VSGSLGL+PKTGELISDD+ EQTEQALKNVG
Sbjct: 61  TEIKGIATDNAPEALGPYSQGIIANNILYVSGSLGLIPKTGELISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPKNAKIE 180
           AILRAGGADY++VVKTTIMLA+VADF LVN+IYAKYF N PAPARSTF AGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVVKTTIMLANVADFTLVNEIYAKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVI 183
           IDAIAV+
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of Tan0008206.1 vs. TAIR 10
Match: AT3G20390.1 (endoribonuclease L-PSP family protein )

HSP 1 Score: 167.5 bits (423), Expect = 9.6e-42
Identity = 99/192 (51.56%), Postives = 129/192 (67.19%), Query Frame = 0


Query: 1   MAWCAAQSFQIPASDV-ISRRRTATP--SAG------GAVSMWRRPSSVSNRQMSFKCLA 60
           M W   +S   P  D+  + R T TP  +AG        VS++R    +S+R   F  L+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFR----MSSRSPPFASLS 60

Query: 61  ISECTGIIAIV-TDKAPKALGPYSQGIIANKFVFVSGSLGLMPKTGELISDDIAEQTEQA 120
           +S  +    +V T+KAP ALGPYSQ I AN  VF+SG LGL+P+TG+ +S+ + +QTEQ 
Sbjct: 61  VSASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQV 120

Query: 121 LKNVGAILRAGGADYNKVVKTTIMLADVADFALVNDIYAKYFSNDPAPARSTFQAGALPK 180
           LKN+G IL+A GADY+ VVKTTIMLAD+ADF  VN+IYAKYF   P+PARST+Q  ALP 
Sbjct: 121 LKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFP-APSPARSTYQVAALPL 180

Query: 181 NAKIEIDAIAVI 183
           NAKIEI+ IA +
Sbjct: 181 NAKIEIECIATL 187

The following BLAST results are available for this feature:

BLAST of Tan0008206.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JQ4	1.4e-40	51.56	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P52758	7.5e-31	49.59	2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=...	[more]
Q10121	2.8e-30	52.07	RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 ...	[more]
Q3T114	4.8e-30	48.76	2-iminobutanoate/2-iminopropanoate deaminase OS=Bos taurus OX=9913 GN=RIDA PE=2 ...	[more]
P52759	4.8e-30	50.41	2-iminobutanoate/2-iminopropanoate deaminase OS=Rattus norvegicus OX=10116 GN=Ri...	[more]

BLAST of Tan0008206.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553271.1	6.9e-74	78.38	2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo]	[more]
XP_023552960.1	1.2e-73	78.38	2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985268.1	1.3e-72	77.84	2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita maxima]	[more]
KAG6577421.1	1.1e-71	76.22	Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperm...	[more]
KAG7015495.1	1.1e-71	76.22	Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperm...	[more]

BLAST of Tan0008206.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JD57	6.3e-73	77.84	2-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1F0U9	1.2e-71	75.14	2-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1EVW2	5.9e-71	75.14	2-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A5D3BWQ5	4.2e-69	76.47	Ribonuclease UK114-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CJ80	4.2e-69	76.47	ribonuclease UK114-like OS=Cucumis melo OX=3656 GN=LOC103501582 PE=3 SV=1	[more]

BLAST of Tan0008206.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20390.1	9.6e-42	51.56	endoribonuclease L-PSP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 64..181 e-value: 3.8E-40 score: 136.7
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA	coord: 1..182
IPR035959	RutC-like superfamily	GENE3D	3.30.1330.40		coord: 59..182 e-value: 7.9E-44 score: 150.8
IPR035959	RutC-like superfamily	SUPERFAMILY	55298	YjgF-like	coord: 59..182
IPR006056	RidA family	TIGRFAM	TIGR00004	TIGR00004	coord: 60..181 e-value: 4.9E-47 score: 157.2
None	No IPR available	PANTHER	PTHR11803:SF45	PERCHLORIC ACID SOLUBLE TRANSLATION INHIBITOR-LIKE PROTEIN	coord: 1..182
None	No IPR available	CDD	cd00448	YjgF_YER057c_UK114_family	coord: 73..180 e-value: 2.38393E-43 score: 138.075
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 158..176

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0008206	Tan0008206	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008206.1-five_prime_utr	Tan0008206.1-five_prime_utr-LG01:18192419..18192524	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008206.1-exon	Tan0008206.1-exon-LG01:18192419..18192693	exon
Tan0008206.1-exon	Tan0008206.1-exon-LG01:18194345..18194457	exon
Tan0008206.1-exon	Tan0008206.1-exon-LG01:18195099..18195143	exon
Tan0008206.1-exon	Tan0008206.1-exon-LG01:18195242..18195315	exon
Tan0008206.1-exon	Tan0008206.1-exon-LG01:18195464..18195513	exon
Tan0008206.1-exon	Tan0008206.1-exon-LG01:18195699..18196425	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008206.1-cds	Tan0008206.1-cds-LG01:18192525..18192693	CDS
Tan0008206.1-cds	Tan0008206.1-cds-LG01:18194345..18194457	CDS
Tan0008206.1-cds	Tan0008206.1-cds-LG01:18195099..18195143	CDS
Tan0008206.1-cds	Tan0008206.1-cds-LG01:18195242..18195315	CDS
Tan0008206.1-cds	Tan0008206.1-cds-LG01:18195464..18195513	CDS
Tan0008206.1-cds	Tan0008206.1-cds-LG01:18195699..18195796	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008206.1-three_prime_utr	Tan0008206.1-three_prime_utr-LG01:18195797..18196425	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0008206.1	Tan0008206.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901565	organonitrogen compound catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0019239	deaminase activity