Tan0007238.1 (mRNA) Snake gourd v1

Overview


Name	Tan0007238.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Cold and drought regulatory protein
Location	LG10: 34245268 .. 34245753 (+)
Sequence length	486
RNA-Seq Expression	Tan0007238.1
Synteny	Tan0007238.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACTTAGATCCAAACAAACACCGTAACCATCACCGTCACTAATGTCAGGACTCCTCACGAAATATGGAGGAAAGATCCAAGACTACATAGTCGAGGAGCACAAGGGCGAGCATCACGAGGCGCACAAAGGCGAGCACCACGAGGAGCACAAGGGCGAGCACGGCGGCAAGTCGGAGCATAAGGAAGGGCTGATCGATAAGATCAAAGATAAGATCCATGGAGATGATCATGATGAGAAAGGTGAGAAGTAAAAGGGCGATGGCGAGCACCACCACCACGAAGGCGGTGGCCATAGCAGCAGCAGCCACAGCGATAGCGACTGATCTATCATTCCGATCGTGATTTCGCGTCCCTCTGTGTGTGTCTTTAATAAACTTCCCTAATCTCCCTGTTGCTCTTTATATCAGCCTCTGTTTTTCCACTTCTACTCGTTTTTAATGTAAAATCCAGTGTGGTGTATAATAAAAGATCCCAATGTTAGGAC

mRNA sequence

CAAACTTAGATCCAAACAAACACCGTAACCATCACCGTCACTAATGTCAGGACTCCTCACGAAATATGGAGGAAAGATCCAAGACTACATAGTCGAGGAGCACAAGGGCGAGCATCACGAGGCGCACAAAGGCGAGCACCACGAGGAGCACAAGGGCGAGCACGGCGGCAAGTCGGAGCATAAGGAAGGGCTGATCGATAAGATCAAAGATAAGATCCATGGAGATGATCATGATGAGAAAGGTGAGAAGTAAAAGGGCGATGGCGAGCACCACCACCACGAAGGCGGTGGCCATAGCAGCAGCAGCCACAGCGATAGCGACTGATCTATCATTCCGATCGTGATTTCGCGTCCCTCTGTGTGTGTCTTTAATAAACTTCCCTAATCTCCCTGTTGCTCTTTATATCAGCCTCTGTTTTTCCACTTCTACTCGTTTTTAATGTAAAATCCAGTGTGGTGTATAATAAAAGATCCCAATGTTAGGAC

Coding sequence (CDS)

ATGTCAGGACTCCTCACGAAATATGGAGGAAAGATCCAAGACTACATAGTCGAGGAGCACAAGGGCGAGCATCACGAGGCGCACAAAGGCGAGCACCACGAGGAGCACAAGGGCGAGCACGGCGGCAAGTCGGAGCATAAGGAAGGGCTGATCGATAAGATCAAAGATAAGATCCATGGAGATGATCATGATGAGAAAGGTGAGAAGTAA

Protein sequence

MSGLLTKYGGKIQDYIVEEHKGEHHEAHKGEHHEEHKGEHGGKSEHKEGLIDKIKDKIHGDDHDEKGEK

Homology

[Close]

BLAST of Tan0007238.1 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-12
Identity = 46/78 (58.97%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 1  MSGLLTK------YGGKIQDYIVEEHKGEHHEAHKGEHHEEHKGEHGGK---SEHKEGLI 60
          MSG++ K       GG  ++    EH GEH   HKGEHH EHKGEH G+    EHKEGL+
Sbjct: 1  MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGEHKEGLV 60

Query: 61 DKIKDKIHGDDHDEKGEK 70
          DKIKDKIHGD HD KGEK
Sbjct: 61 DKIKDKIHGDGHD-KGEK 77

[Close]

BLAST of Tan0007238.1 vs. NCBI nr
Match: XP_008443295.1 (PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucumis melo var. makuwa] >TYK25548.1 zinc transporter ZIP6 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MSGLLTKYGGKIQDYIVEEHKGEHHEAHKGEHHEEH-----KGEHGGKSEHKEGLIDKIK 60
          MSG + K G K+  +I  +HKGEHH+AHKGEHH+EH     K EH G+  HKEG+I+KIK
Sbjct: 1  MSGFIEKIGEKL--HIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEG-HKEGIIEKIK 60

Query: 61 DKIHGDD--HDEKGEK 70
          DKIHG D  HDEKGEK
Sbjct: 61 DKIHGGDGHHDEKGEK 73

[Close]

BLAST of Tan0007238.1 vs. NCBI nr
Match: KAG7028450.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MSGLLTKYGGKIQDYIVEEHKGEHHEAHKGEHHEEHKGEHGGKSE-----HKEGLIDKIK 60
          M+G++ K G K+  +I  +HKGEHHE  K EH  EH+ +HG KSE     HKEGL++KIK
Sbjct: 1  MAGIMEKIGEKL--HIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIK 60

Query: 61 DKIHGDDHDEKGEK 70
          DKIHGD HDEKGEK
Sbjct: 61 DKIHGDHHDEKGEK 72

[Close]

BLAST of Tan0007238.1 vs. NCBI nr
Match: XP_011652200.1 (protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 7.7e-10
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MSGLLTKYGGKIQDYIVEEHKGEHHEA----HKGEHHEEHK--GEHGGKSEHKEGLIDKI 60
          MSG + K G K+  +I  +HKGEHH+A    HKGEHH+EHK   EH G+  HKEG++DKI
Sbjct: 1  MSGFIEKIGEKL--HIGGDHKGEHHDAHKGEHKGEHHDEHKKHEEHHGEGAHKEGIMDKI 60

Query: 61 KDKIH-GDDHDEKGEK 70
          KDKIH GD H+EKGEK
Sbjct: 61 KDKIHGGDHHEEKGEK 74

[Close]

BLAST of Tan0007238.1 vs. NCBI nr
Match: XP_038903205.1 (protein SRC1 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MSGLLTKYGGKIQDYIVEEH-KGEHHEAHKGEHHEEHKGEHGGKSE-----HKEGLIDKI 60
          MSG + K G K+  +I  +H KGEHH+ HKGEHH+EHK +HG   E     HKEGLI+KI
Sbjct: 1  MSGFIEKIGEKL--HIGGDHNKGEHHDGHKGEHHDEHK-KHGKSEEHHGEGHKEGLIEKI 60

Query: 61 KDKIHGDDHDEKGEK 70
          KDKIHG DHDEKGEK
Sbjct: 61 KDKIHG-DHDEKGEK 71

[Close]

BLAST of Tan0007238.1 vs. NCBI nr
Match: KAG4933739.1 (hypothetical protein JHK87_047741 [Glycine soja])

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-09
Identity = 46/78 (58.97%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 1  MSGLLTK------YGGKIQDYIVEEHKGEHHEAHKGEHHEEHKGEHGGK---SEHKEGLI 60
          MSG++ K       GG  ++    EH GEH   HKGEHH EHKGEH G+    EHKEGL+
Sbjct: 1  MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGEHKEGLV 60

Query: 61 DKIKDKIHGDDHDEKGEK 70
          DKIKDKIHGD HD KGEK
Sbjct: 61 DKIKDKIHGDGHD-KGEK 77

[Close]

BLAST of Tan0007238.1 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MSGLLTKYGGKIQDYIVEEHKGEHHEAHKGEHHEEH-----KGEHGGKSEHKEGLIDKIK 60
          MSG + K G K+  +I  +HKGEHH+AHKGEHH+EH     K EH G+  HKEG+I+KIK
Sbjct: 1  MSGFIEKIGEKL--HIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEG-HKEGIIEKIK 60

Query: 61 DKIHGDD--HDEKGEK 70
          DKIHG D  HDEKGEK
Sbjct: 61 DKIHGGDGHHDEKGEK 73

[Close]

BLAST of Tan0007238.1 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MSGLLTKYGGKIQDYIVEEHKGEHHEAHKGEHHEEH-----KGEHGGKSEHKEGLIDKIK 60
          MSG + K G K+  +I  +HKGEHH+AHKGEHH+EH     K EH G+  HKEG+I+KIK
Sbjct: 1  MSGFIEKIGEKL--HIGGDHKGEHHDAHKGEHHDEHKKHEKKEEHHGEG-HKEGIIEKIK 60

Query: 61 DKIHGDD--HDEKGEK 70
          DKIHG D  HDEKGEK
Sbjct: 61 DKIHGGDGHHDEKGEK 73

[Close]

BLAST of Tan0007238.1 vs. ExPASy TrEMBL
Match: A0A0B2SHK1 (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_035393 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 46/78 (58.97%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 1  MSGLLTK------YGGKIQDYIVEEHKGEHHEAHKGEHHEEHKGEHGGK---SEHKEGLI 60
          MSG++ K       GG  ++    EH GEH   HKGEHH EHKGEH G+    EHKEGL+
Sbjct: 1  MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGEHKEGLV 60

Query: 61 DKIKDKIHGDDHDEKGEK 70
          DKIKDKIHGD HD KGEK
Sbjct: 61 DKIKDKIHGDGHD-KGEK 77

[Close]

BLAST of Tan0007238.1 vs. ExPASy TrEMBL
Match: A0A0R0FQD3 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G187600 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 46/78 (58.97%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 1  MSGLLTK------YGGKIQDYIVEEHKGEHHEAHKGEHHEEHKGEHGGK---SEHKEGLI 60
          MSG++ K       GG  ++    EH GEH   HKGEHH EHKGEH G+    EHKEGL+
Sbjct: 1  MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGEHKEGLV 60

Query: 61 DKIKDKIHGDDHDEKGEK 70
          DKIKDKIHGD HD KGEK
Sbjct: 61 DKIKDKIHGDGHD-KGEK 77

[Close]

BLAST of Tan0007238.1 vs. ExPASy TrEMBL
Match: A0A1B5FL75 (Cold and drought regulatory protein (Fragment) OS=Cajanus cajan OX=3821 GN=CdCDR PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1  MSGLLTKYGGKIQDYIVEEHKGEHHEA-HKGEHHEEHKGEHGGKSEHKEGLIDKIKDKIH 60
          MSG++ K       +  EEHKGEHH+  HKGEHH EHKGEH G  EHKEG +DK+KDKIH
Sbjct: 1  MSGIIHKIEETFHGHKNEEHKGEHHKGEHKGEHHGEHKGEHHG--EHKEGFMDKVKDKIH 60

Query: 61 GDDHDEKGEK 70
          GD  + KGEK
Sbjct: 61 GDG-EHKGEK 67

The following BLAST results are available for this feature:

BLAST of Tan0007238.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	5.0e-12	58.97	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]

BLAST of Tan0007238.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443295.1	2.6e-10	61.84	PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucu...	[more]
KAG7028450.1	4.5e-10	59.46	Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_011652200.1	7.7e-10	60.53	protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cu...	[more]
XP_038903205.1	2.9e-09	62.67	protein SRC1 [Benincasa hispida]	[more]
KAG4933739.1	3.8e-09	58.97	hypothetical protein JHK87_047741 [Glycine soja]	[more]

BLAST of Tan0007238.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF86	1.3e-10	61.84	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	1.3e-10	61.84	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]
A0A0B2SHK1	1.9e-09	58.97	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_035393 PE=4 SV=1	[more]
A0A0R0FQD3	1.9e-09	58.97	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G187600 PE=4 SV=1	[more]
A0A1B5FL75	3.2e-09	61.43	Cold and drought regulatory protein (Fragment) OS=Cajanus cajan OX=3821 GN=CdCDR...	[more]

BLAST of Tan0007238.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0007238	Tan0007238	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0007238.1-five_prime_utr	Tan0007238.1-five_prime_utr-LG10:34245268..34245310	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0007238.1-exon	Tan0007238.1-exon-LG10:34245268..34245753	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0007238.1-cds	Tan0007238.1-cds-LG10:34245311..34245520	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0007238.1-three_prime_utr	Tan0007238.1-three_prime_utr-LG10:34245521..34245753	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0007238.1	Tan0007238.1-protein	polypeptide