Tan0006471.1 (mRNA) Snake gourd v1

Overview


Name	Tan0006471.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	LG08: 1930929 .. 1933289 (-)
Sequence length	1228
RNA-Seq Expression	Tan0006471.1
Synteny	Tan0006471.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACTCAAAAAAGAAGGAAAAAGAACCCTCTCTATCTCTTCCATTCTATCTTGTTCGCGCCATCCTCCGCTAGCGGACTCTCTCAGCTCTCTATTTCACCAGAAATGGTACCGAGGCAATTGCGAACAGTCTTCGCCGGCGCCGCCGTCATCCTCGGCGGAATTTGCACTCTCAACTTCGCTTCTTTTCTCACTATCCAAACGCTCCGTCTCTCCGCTGAAGCCAAACGGGTAATTCTCTTTTCTCTAAGAATACACATGTTTTCAAAACTAAACTTGTATATTGGGAATGAAAGAAGGCTCGAAGAAGTTCTTTGATACTATTCTATTGGGGTTTTCTACTTTCTGCAGAGAAAGATTGCTTTGCCCTGTAAGGCTTGTAGAGGAAAAGGGTTTTATATTTGCAAATTATGCCGTGGAAATGCAGTCATTCAGTGGTCGCCATTGGCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAGGGAAATAGGTTAAACTTCCACCCCTTTTTATTTCGCTAACTGCTGCTTGTTAGAATTTTCCCAGGGTTAAACTAATGGCATTTCCATTCTTTGCGATTTACTCGGTAGATTGTATATTCATGTCAAATTTTATCCTGAATCTCATGCGGATTATGAAAGAAGAAGATGCTGGACCCAAGAGTTGTTTTTGTGTTTTTTTTGCTATAGTAGATTTTATTGGCAAAGTGAAGAAGGAACAGCTAATCTTAAGTTAAAAAAGTCGTATTAACAAGTTAAGATTCTGAAGTTCTCTCTCTAATTTTCCCTGTTTTGAAATTGAAAGATTATGTGCATGAAAGTTAATTTTGCCCCTCTAGTAAAATTTCTGGCTTCACTCTTGAGTACAGATTTCATTGATTTATGTTTTCTGGTAATGATGTGTTTTCTTACTCCTGTTGTTGTTTTACTGCATCATATGATATTGCAGGGTGCAACGTTGCCTAAACTGCCTAGGTAAAGGATATGAAGTATGATTGACCTATGACATTGACAAATGGTGAAACATTGGCCTTTTAAGTTTCATAAAGTAAGTGAATCTTTGCATTGTATCGGTTCTTTTTCAGATTTTTCACTTAATAAACGTAATCTAATGTATGATTTTAGCAAGAACACTATAATTTTTGCTTCTAACCTTATCTTACCATATGTAATAGTCTAATAGATCTTAGTCTTTTAATCAAGGTTCTTGGGTGAGACCCTACTTTGGCTGCCTGGCTGTCTTTTGTTAGCAACATGCTCCTTGTTCATGTTTTCAACCTTCCTGTCCTTTTCATGATCTTAAACAATTGTTATTATAAAATTTTCTTGTTCTTGGTTTTATTATTTGGAACCTTTCTTTCCTAACTAATTAATCCGAAAGTTTTGTTTGTGGAACTCTGGAAATTGTAGGTGACCTATCTTGTATATGTTTCTGATACTCTTTTTATTCTTTTGTGGTGTTTTCAGTTTATTTCCTAGCAATTCGTTGGAGTATCTTAGCTTTTAGAGTTAACCTTGTAACCTTAGAAGTCTCAGCATGCCTAAGGAGAGGAGATCGTTCTGTGTCTCGTAATAGATGAAAATGATATTGATTTTCATGCAGCTTGGTAGGTAGGTAGGTGGTAACATAAATCCACAATGACTTTAGAAGCCTAACGGTAATAGAATGGAAAGAACCCAGATCCATCTGCCTTTTCATGACTGCAAAGTCAAGAAGTTGCTCCAGTGTAACCTGTCATTTCAGTGGAATCAAATACAGATCAGAGAAAGCGTGCAAGGAAGGAGATCATCTTGTGAAGCCGACCTGGAGAGGCAGTGCAATTGAGCGACAACGCCAACTAGGGACCTTGAAGACTTTCTGAGTCCGATACTCTTGTTGTGGATGGGGACGCTTATATCATTTTGCCTGTTGGTTATGTTGGTCCACTCTCTGTTTTGGTTCTTTGAGTTCTTCGACCTGAAACTGATGTGAGGTCTAGCAGGTGGTATAGAACATCTGGATCCCAAGGACAATTGAACTCCAGAAGATAATAGGCTTTGGGATTGGAATATCCCTGACTGATCTGGAAACTGGATTTTCCTCCACAGGTAATAAAAGGACGATGAATCTCCAGAAGACAACTTTCATTCTTTAAATATGAACATGTAGAGCTTGTTTAAGTTGTTCAGAGAAACCTTCCGATCCATTCTCTTCTTTGTATGTAACCTTTTATGTTTTTGCTGGAAATATAGCAGTATGTTTAACTTTTAACTTGCTGAATGCTTGGAATAACACCAATAGATTTGTTTTCAGAATACTCGACACATCATTGAAAACGTCGATAGGGATCAAACTGTCCCATCGAGCGCGA

mRNA sequence

CAAAACTCAAAAAAGAAGGAAAAAGAACCCTCTCTATCTCTTCCATTCTATCTTGTTCGCGCCATCCTCCGCTAGCGGACTCTCTCAGCTCTCTATTTCACCAGAAATGGTACCGAGGCAATTGCGAACAGTCTTCGCCGGCGCCGCCGTCATCCTCGGCGGAATTTGCACTCTCAACTTCGCTTCTTTTCTCACTATCCAAACGCTCCGTCTCTCCGCTGAAGCCAAACGGAGAAAGATTGCTTTGCCCTGTAAGGCTTGTAGAGGAAAAGGGTTTTATATTTGCAAATTATGCCGTGGAAATGCAGTCATTCAGTGGTCGCCATTGGCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAGGGAAATAGGGTGCAACGTTGCCTAAACTGCCTAGGTAAAGGATATGAAGTATGATTGACCTATGACATTGACAAATGGTGAAACATTGGCCTTTTAAGTTTCATAAACTTGGTAGGTAGGTAGGTGGTAACATAAATCCACAATGACTTTAGAAGCCTAACGGTAATAGAATGGAAAGAACCCAGATCCATCTGCCTTTTCATGACTGCAAAGTCAAGAAGTTGCTCCAGTGTAACCTGTCATTTCAGTGGAATCAAATACAGATCAGAGAAAGCGTGCAAGGAAGGAGATCATCTTGTGAAGCCGACCTGGAGAGGCAGTGCAATTGAGCGACAACGCCAACTAGGGACCTTGAAGACTTTCTGAGTCCGATACTCTTGTTGTGGATGGGGACGCTTATATCATTTTGCCTGTTGGTTATGTTGGTCCACTCTCTGTTTTGGTTCTTTGAGTTCTTCGACCTGAAACTGATGTGAGGTCTAGCAGGTGGTATAGAACATCTGGATCCCAAGGACAATTGAACTCCAGAAGATAATAGGCTTTGGGATTGGAATATCCCTGACTGATCTGGAAACTGGATTTTCCTCCACAGGTAATAAAAGGACGATGAATCTCCAGAAGACAACTTTCATTCTTTAAATATGAACATGTAGAGCTTGTTTAAGTTGTTCAGAGAAACCTTCCGATCCATTCTCTTCTTTGTATGTAACCTTTTATGTTTTTGCTGGAAATATAGCAGTATGTTTAACTTTTAACTTGCTGAATGCTTGGAATAACACCAATAGATTTGTTTTCAGAATACTCGACACATCATTGAAAACGTCGATAGGGATCAAACTGTCCCATCGAGCGCGA

Coding sequence (CDS)

ATGGTACCGAGGCAATTGCGAACAGTCTTCGCCGGCGCCGCCGTCATCCTCGGCGGAATTTGCACTCTCAACTTCGCTTCTTTTCTCACTATCCAAACGCTCCGTCTCTCCGCTGAAGCCAAACGGAGAAAGATTGCTTTGCCCTGTAAGGCTTGTAGAGGAAAAGGGTTTTATATTTGCAAATTATGCCGTGGAAATGCAGTCATTCAGTGGTCGCCATTGGCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAGGGAAATAGGGTGCAACGTTGCCTAAACTGCCTAGGTAAAGGATATGAAGTATGA

Protein sequence

MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYICKLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV

Homology

[Close]

BLAST of Tan0006471.1 vs. NCBI nr
Match: XP_022142951.1 (uncharacterized protein LOC111012944 [Momordica charantia])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+PRQLRTVF GAAVILGGICTLNFASFLTIQTLRL+AEAKRRKIALPCKACRGKGFYIC
Sbjct: 1   MIPRQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLCRGNAVI WSPL+DPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV
Sbjct: 61  KLCRGNAVIHWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. NCBI nr
Match: XP_008457839.1 (PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 3.0e-53
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+PRQLRT+F GAAVILGGICTLN ASFLTIQTLRL+AEAKRRKIALPCKACRGKGFYIC
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLCRGNAVIQWSPL+DPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. NCBI nr
Match: XP_038889623.1 (uncharacterized protein LOC120079492 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 3.0e-53
Identity = 100/106 (94.34%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+P+QLRTVF GAAVILGGICTLNFASFLTIQTLRL+AEAKRRKIALPCKACRGKGFYIC
Sbjct: 1   MIPKQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLC+GNAVIQWSPL+DPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV
Sbjct: 61  KLCQGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. NCBI nr
Match: XP_004139324.1 (uncharacterized protein LOC101203873 [Cucumis sativus] >KGN60659.1 hypothetical protein Csa_019507 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.3e-52
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+PRQLRT+F GAAVILGGICTLN ASFLTIQTLR++AEAKRRKI LPCKACRGKGFY+C
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLCRGNAVIQWSPL+DPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. NCBI nr
Match: KAG7021261.1 (hypothetical protein SDJN02_17949 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.2 bits (526), Expect = 6.9e-50
Identity = 96/106 (90.57%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           MVPRQLRT+F GAAVI GGI TL FASFLTIQTLR +AEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLCRGNAVIQWSPL+DPIAMNPCVCPTCEGNRVQ CLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. ExPASy TrEMBL
Match: A0A6J1CNQ8 (uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012944 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.5e-54
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+PRQLRTVF GAAVILGGICTLNFASFLTIQTLRL+AEAKRRKIALPCKACRGKGFYIC
Sbjct: 1   MIPRQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLCRGNAVI WSPL+DPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV
Sbjct: 61  KLCRGNAVIHWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. ExPASy TrEMBL
Match: A0A1S3C6K9 (uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+PRQLRT+F GAAVILGGICTLN ASFLTIQTLRL+AEAKRRKIALPCKACRGKGFYIC
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLCRGNAVIQWSPL+DPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. ExPASy TrEMBL
Match: A0A0A0LI05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.1e-52
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+PRQLRT+F GAAVILGGICTLN ASFLTIQTLR++AEAKRRKI LPCKACRGKGFY+C
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 107
           KLCRGNAVIQWSPL+DPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Tan0006471.1 vs. ExPASy TrEMBL
Match: A0A5D3BFD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00060 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.7e-44
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
          M+PRQLRT+F GAAVILGGICTLN ASFLTIQTLRL+AEAKRRKIALPCKACRGKGFYIC
Sbjct: 1  MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61 KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNR 93
          KLCRGNAVIQWSPL+DPIAMNPCVCPTCEGNR
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR 92

[Close]

BLAST of Tan0006471.1 vs. ExPASy TrEMBL
Match: A0A6P4BUI7 (uncharacterized protein LOC107435933 OS=Ziziphus jujuba OX=326968 GN=LOC107435933 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.8e-43
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MVPRQLRTVFAGAAVILGGICTLNFASFLTIQTLRLSAEAKRRKIALPCKACRGKGFYIC 60
           M+P+QLRT+  GAAVILGGI TLN  S  TI TLRL+ EAKRRK+ALPC+ C+GKGFYIC
Sbjct: 1   MIPKQLRTMATGAAVILGGIFTLNLVSSATIATLRLATEAKRRKVALPCRVCKGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLGKGYE 106
           +LC+GNA IQWSPL DP+A+NPC+CPTC+GNRVQRCLNCLGKGY+
Sbjct: 61  RLCKGNATIQWSPLYDPVAINPCLCPTCDGNRVQRCLNCLGKGYD 105

[Close]

BLAST of Tan0006471.1 vs. TAIR 10
Match: AT5G20220.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04
Identity = 19/55 (34.55%), Postives = 24/55 (43.64%), Query Frame = 0


Query: 47  LPCKACRGKGFYICKLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLG 102
           LPC  CRG+G+  C  C              I  +   CP C+G  +  CL CLG
Sbjct: 90  LPCPTCRGRGYTSCSNC-------------GIERSRLDCPQCKGKGIMTCLRCLG 131

[Close]

BLAST of Tan0006471.1 vs. TAIR 10
Match: AT5G20220.2 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04
Identity = 19/55 (34.55%), Postives = 24/55 (43.64%), Query Frame = 0


Query: 47  LPCKACRGKGFYICKLCRGNAVIQWSPLADPIAMNPCVCPTCEGNRVQRCLNCLG 102
           LPC  CRG+G+  C  C              I  +   CP C+G  +  CL CLG
Sbjct: 90  LPCPTCRGRGYTSCSNC-------------GIERSRLDCPQCKGKGIMTCLRCLG 131

The following BLAST results are available for this feature:

BLAST of Tan0006471.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006471.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142951.1	1.7e-53	95.28	uncharacterized protein LOC111012944 [Momordica charantia]	[more]
XP_008457839.1	3.0e-53	94.34	PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo]	[more]
XP_038889623.1	3.0e-53	94.34	uncharacterized protein LOC120079492 [Benincasa hispida]	[more]
XP_004139324.1	4.3e-52	91.51	uncharacterized protein LOC101203873 [Cucumis sativus] >KGN60659.1 hypothetical ...	[more]
KAG7021261.1	6.9e-50	90.57	hypothetical protein SDJN02_17949 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0006471.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNQ8	8.5e-54	95.28	uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A1S3C6K9	1.4e-53	94.34	uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=...	[more]
A0A0A0LI05	2.1e-52	91.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1	[more]
A0A5D3BFD4	2.7e-44	93.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6P4BUI7	8.8e-43	75.24	uncharacterized protein LOC107435933 OS=Ziziphus jujuba OX=326968 GN=LOC10743593...	[more]

BLAST of Tan0006471.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20220.1	7.9e-04	34.55	zinc knuckle (CCHC-type) family protein	[more]
AT5G20220.2	7.9e-04	34.55	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852:SF63	BNAA02G17140D PROTEIN	coord: 13..104
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 13..104
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 44..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0006471	Tan0006471	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006471.1-three_prime_utr	Tan0006471.1-three_prime_utr-LG08:1930929..1931676	three_prime_UTR
Tan0006471.1-three_prime_utr	Tan0006471.1-three_prime_utr-LG08:1932232..1932284	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006471.1-exon	Tan0006471.1-exon-LG08:1930929..1931676	exon
Tan0006471.1-exon	Tan0006471.1-exon-LG08:1932232..1932330	exon
Tan0006471.1-exon	Tan0006471.1-exon-LG08:1932789..1932937	exon
Tan0006471.1-exon	Tan0006471.1-exon-LG08:1933058..1933289	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006471.1-cds	Tan0006471.1-cds-LG08:1932285..1932330	CDS
Tan0006471.1-cds	Tan0006471.1-cds-LG08:1932789..1932937	CDS
Tan0006471.1-cds	Tan0006471.1-cds-LG08:1933058..1933183	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006471.1-five_prime_utr	Tan0006471.1-five_prime_utr-LG08:1933184..1933289	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0006471.1	Tan0006471.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane