
Tan0003473.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATATTTCTAAGCCAAAGAACCAAAAATTACCATGTCTCCTATTAGCTCCAACGACTTGCTCAGGATCTTCAACAAGCTCGACAAGAACCACGATGGCCTCATTTGCCTACACGAGCTCAACTGGCTCCTCCACACCATTGGCATCCAACTAACCATGGAGGAGTTGGAGTCTTTCCTCGAGAAACCAAGCCTCGACTTCAACGAGTTCTTGTTCTTTTACGAATCGATATCGAAGCAAAACAATGCCGAGTGCAAGGGAGGCGTAGGCGATGACGACGATGCAGGCCGAGAGGAAGATATCGACATTGTATATATGGCGTTTAAAGTATTTGACATGAATGACGATGGCTTCATTTCTTGCGAGGATCTCCAAAACGTGTTGTCGAGACTAGAGTTTTGGGACGCAAATAGAAGTGATATTGATAGCAAAAGTATGATTCGAGCTTATGACACCAATTTGGATGGGAAGCTCGATTTCGAAGAGTTTAAGAACATGATGTTGTTGACAAGCTCTTGATTATATTCGCCTTTGAGCTTTTAATGTTGCTTTGTTTGAAATGTGTTGTGTTGTGTGTTTTCTGTCCAGGTGGTTTCATTGGAGTTTTTGATATATGTCTTGAATAAACTAACCTAGAAAATTTTGAGTTAGGACTATATTTAACATGTTAAATATGAGTTTACTCCGTTAGTTAGATTAGAAACTTAACCTAATTAAAAGTATATGAGGGTGGCTTTGAAGAATAAAGGGG TATATTTCTAAGCCAAAGAACCAAAAATTACCATGTCTCCTATTAGCTCCAACGACTTGCTCAGGATCTTCAACAAGCTCGACAAGAACCACGATGGCCTCATTTGCCTACACGAGCTCAACTGGCTCCTCCACACCATTGGCATCCAACTAACCATGGAGGAGTTGGAGTCTTTCCTCGAGAAACCAAGCCTCGACTTCAACGAGTTCTTGTTCTTTTACGAATCGATATCGAAGCAAAACAATGCCGAGTGCAAGGGAGGCGTAGGCGATGACGACGATGCAGGCCGAGAGGAAGATATCGACATTGTATATATGGCGTTTAAAGTATTTGACATGAATGACGATGGCTTCATTTCTTGCGAGGATCTCCAAAACGTGTTGTCGAGACTAGAGTTTTGGGACGCAAATAGAAGTGATATTGATAGCAAAAGTATGATTCGAGCTTATGACACCAATTTGGATGGGAAGCTCGATTTCGAAGAGTTTAAGAACATGATGTTGTTGACAAGCTCTTGATTATATTCGCCTTTGAGCTTTTAATGTTGCTTTGTTTGAAATGTGTTGTGTTGTGTGTTTTCTGTCCAGGTGGTTTCATTGGAGTTTTTGATATATGTCTTGAATAAACTAACCTAGAAAATTTTGAGTTAGGACTATATTTAACATGTTAAATATGAGTTTACTCCGTTAGTTAGATTAGAAACTTAACCTAATTAAAAGTATATGAGGGTGGCTTTGAAGAATAAAGGGG ATGTCTCCTATTAGCTCCAACGACTTGCTCAGGATCTTCAACAAGCTCGACAAGAACCACGATGGCCTCATTTGCCTACACGAGCTCAACTGGCTCCTCCACACCATTGGCATCCAACTAACCATGGAGGAGTTGGAGTCTTTCCTCGAGAAACCAAGCCTCGACTTCAACGAGTTCTTGTTCTTTTACGAATCGATATCGAAGCAAAACAATGCCGAGTGCAAGGGAGGCGTAGGCGATGACGACGATGCAGGCCGAGAGGAAGATATCGACATTGTATATATGGCGTTTAAAGTATTTGACATGAATGACGATGGCTTCATTTCTTGCGAGGATCTCCAAAACGTGTTGTCGAGACTAGAGTTTTGGGACGCAAATAGAAGTGATATTGATAGCAAAAGTATGATTCGAGCTTATGACACCAATTTGGATGGGAAGCTCGATTTCGAAGAGTTTAAGAACATGATGTTGTTGACAAGCTCTTGA MSPISSNDLLRIFNKLDKNHDGLICLHELNWLLHTIGIQLTMEELESFLEKPSLDFNEFLFFYESISKQNNAECKGGVGDDDDAGREEDIDIVYMAFKVFDMNDDGFISCEDLQNVLSRLEFWDANRSDIDSKSMIRAYDTNLDGKLDFEEFKNMMLLTSS Homology
BLAST of Tan0003473.1 vs. ExPASy Swiss-Prot
Match: Q9LPK5 (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana OX=3702 GN=CML44 PE=2 SV=2) HSP 1 Score: 118.6 bits (296), Expect = 6.4e-26 Identity = 72/162 (44.44%), Postives = 99/162 (61.11%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy Swiss-Prot
Match: Q9SVG9 (Calcium-binding protein CML42 OS=Arabidopsis thaliana OX=3702 GN=CML42 PE=1 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 8.4e-18 Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy Swiss-Prot
Match: P43187 (Calcium-binding allergen Bet v 3 OS=Betula pendula OX=3505 GN=BETVIII PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 6.0e-16 Identity = 59/161 (36.65%), Postives = 92/161 (57.14%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy Swiss-Prot
Match: Q2QVI1 (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica OX=39947 GN=CML28 PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 3.9e-15 Identity = 59/170 (34.71%), Postives = 84/170 (49.41%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy Swiss-Prot
Match: Q9FI19 (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana OX=3702 GN=CML43 PE=2 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 5.1e-15 Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 0
BLAST of Tan0003473.1 vs. NCBI nr
Match: XP_022989807.1 (probable calcium-binding protein CML44 [Cucurbita maxima]) HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67 Identity = 134/162 (82.72%), Postives = 144/162 (88.89%), Query Frame = 0
BLAST of Tan0003473.1 vs. NCBI nr
Match: KAG6602129.1 (putative calcium-binding protein CML44, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67 Identity = 135/162 (83.33%), Postives = 142/162 (87.65%), Query Frame = 0
BLAST of Tan0003473.1 vs. NCBI nr
Match: XP_022959484.1 (probable calcium-binding protein CML44 [Cucurbita moschata]) HSP 1 Score: 263.8 bits (673), Expect = 9.4e-67 Identity = 133/162 (82.10%), Postives = 141/162 (87.04%), Query Frame = 0
BLAST of Tan0003473.1 vs. NCBI nr
Match: XP_022141411.1 (probable calcium-binding protein CML44 [Momordica charantia]) HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66 Identity = 131/166 (78.92%), Postives = 144/166 (86.75%), Query Frame = 0
BLAST of Tan0003473.1 vs. NCBI nr
Match: XP_023551499.1 (probable calcium-binding protein CML44 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65 Identity = 127/158 (80.38%), Postives = 141/158 (89.24%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy TrEMBL
Match: A0A6J1JGU4 (probable calcium-binding protein CML44 OS=Cucurbita maxima OX=3661 GN=LOC111486883 PE=4 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 7.0e-68 Identity = 134/162 (82.72%), Postives = 144/162 (88.89%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy TrEMBL
Match: A0A6J1H868 (probable calcium-binding protein CML44 OS=Cucurbita moschata OX=3662 GN=LOC111460440 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 4.5e-67 Identity = 133/162 (82.10%), Postives = 141/162 (87.04%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy TrEMBL
Match: A0A6J1CJ36 (probable calcium-binding protein CML44 OS=Momordica charantia OX=3673 GN=LOC111011820 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66 Identity = 131/166 (78.92%), Postives = 144/166 (86.75%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy TrEMBL
Match: A0A6J1FLU5 (probable calcium-binding protein CML44 OS=Cucurbita moschata OX=3662 GN=LOC111445399 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65 Identity = 126/158 (79.75%), Postives = 141/158 (89.24%), Query Frame = 0
BLAST of Tan0003473.1 vs. ExPASy TrEMBL
Match: A0A6J1K1Y7 (probable calcium-binding protein CML44 OS=Cucurbita maxima OX=3661 GN=LOC111489388 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64 Identity = 124/158 (78.48%), Postives = 141/158 (89.24%), Query Frame = 0
BLAST of Tan0003473.1 vs. TAIR 10
Match: AT1G21550.1 (Calcium-binding EF-hand family protein ) HSP 1 Score: 118.6 bits (296), Expect = 4.5e-27 Identity = 72/162 (44.44%), Postives = 99/162 (61.11%), Query Frame = 0
BLAST of Tan0003473.1 vs. TAIR 10
Match: AT4G20780.1 (calmodulin like 42 ) HSP 1 Score: 91.7 bits (226), Expect = 5.9e-19 Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 0
BLAST of Tan0003473.1 vs. TAIR 10
Match: AT5G44460.1 (calmodulin like 43 ) HSP 1 Score: 82.4 bits (202), Expect = 3.6e-16 Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 0
BLAST of Tan0003473.1 vs. TAIR 10
Match: AT1G05990.1 (EF hand calcium-binding protein family ) HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14 Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 0
BLAST of Tan0003473.1 vs. TAIR 10
Match: AT3G07490.1 (ARF-GAP domain 11 ) HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14 Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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