Tan0002687.1 (mRNA) Snake gourd v1

Overview


Name	Tan0002687.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Phorbol-ester/DAG-type domain-containing protein
Location	LG01: 23729361 .. 23729666 (-)
Sequence length	306
RNA-Seq Expression	Tan0002687.1
Synteny	Tan0002687.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTGATCGGCGTTGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCTTGCTCGAGCGGATTGATCAACTTTTTCGACAGAGGATGTGCGGAACTGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATACCGAAGAAATTCTTACTGTTCCTCCTGTCTCCGGCGATCGGATGGCTTCAATTTTGGATGTGAAAAATGTAAGTTCATTGTTGATGTTAAGTGTGCTCTCAGAGAAGGCAACGGCAAACCATGTATGTAA

mRNA sequence

ATGATGCTGATCGGCGTTGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCTTGCTCGAGCGGATTGATCAACTTTTTCGACAGAGGATGTGCGGAACTGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATACCGAAGAAATTCTTACTGTTCCTCCTGTCTCCGGCGATCGGATGGCTTCAATTTTGGATGTGAAAAATGTAAGTTCATTGTTGATGTTAAGTGTGCTCTCAGAGAAGGCAACGGCAAACCATGTATGTAA

Coding sequence (CDS)

ATGATGCTGATCGGCGTTGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCTTGCTCGAGCGGATTGATCAACTTTTTCGACAGAGGATGTGCGGAACTGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATACCGAAGAAATTCTTACTGTTCCTCCTGTCTCCGGCGATCGGATGGCTTCAATTTTGGATGTGAAAAATGTAAGTTCATTGTTGATGTTAAGTGTGCTCTCAGAGAAGGCAACGGCAAACCATGTATGTAA

Protein sequence

MMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRRNSYCSSCLRRSDGFNFGCEKCKFIVDVKCALREGNGKPCM

Homology

[Close]

BLAST of Tan0002687.1 vs. NCBI nr
Match: KAG6579395.1 (hypothetical protein SDJN03_23843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 7.8e-27
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 4   IGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRRNS 63
           IGVE++TLCY+C    STY C PCS+G INFFDR C+ELP+EI YPYH H L +  R+NS
Sbjct: 84  IGVESTTLCYVCNKLHSTYFCGPCSNGWINFFDRRCSELPKEIHYPYHRHRLTMSIRKNS 143

Query: 64  YCSSCLRRSDGFNFGCEKCKFIVDVKCALRE 95
            C  C +R   FN+GC+ C FIVD+KC L+E
Sbjct: 144 NCWVCGKRCGAFNYGCDGCSFIVDIKCVLKE 174

[Close]

BLAST of Tan0002687.1 vs. NCBI nr
Match: XP_035551576.1 (uncharacterized protein LOC109008056 [Juglans regia] >KAF5454028.1 hypothetical protein F2P56_023726 [Juglans regia])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 4   IGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRRN- 63
           +G+       +    P  Y C  C      F  + C ELPR+I +P H H L LR +   
Sbjct: 348 VGINKKCNACMRSIFPPFYNCTQCGF----FLHKACVELPRKIRHPLHQHPLILRSKATF 407

Query: 64  -SYCSSCLRRSDGFNFGCEKCKFIVDVKCAL 93
            S C +C R   GF + CEKCKF +DV+C+L
Sbjct: 408 CSVCKTCCRLCSGFTYNCEKCKFNIDVQCSL 434

[Close]

BLAST of Tan0002687.1 vs. NCBI nr
Match: XP_030958351.1 (uncharacterized protein LOC115980215, partial [Quercus lobata])

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-08
Identity = 37/94 (39.36%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 6   VENSTLCYIC--KATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRL----RY 65
           V N+  CY C     P  Y C  CS     F    CA+LP++  +P H H L L     Y
Sbjct: 147 VLNNQKCYACVRAILPPFYSCVNCSF----FLHESCAKLPQKKKHPLHQHPLTLLPTSPY 206

Query: 66  RRNSY-CSSCLRRSDGFNFGCEKCKFIVDVKCAL 93
           R   + C +C R  +GFN+GCE C F +DV+C+L
Sbjct: 207 RSEIFWCDACWRECNGFNYGCETCDFSLDVQCSL 236

[Close]

BLAST of Tan0002687.1 vs. NCBI nr
Match: XP_028056396.1 (uncharacterized protein LOC114260456 [Camellia sinensis] >THG20191.1 hypothetical protein TEA_005576 [Camellia sinensis var. sinensis])

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-08
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 2   MLIGVENSTLCYICKATPST------YVCAPCSSGLINFFDRGCAELPREIDYPYH-HHA 61
           +++  ++  L Y C     T      YVC  C  GL++     CAE+P +I++P+H  H+
Sbjct: 151 LILCYKDKNLTYKCTCCSLTIDGDCLYVCLQC-KGLLH---HSCAEMPWKIEHPFHSSHS 210

Query: 62  LRLR-----YRRNSYCSSCLRRSDGFNFGCEKCKFIVDVKCA 92
           L L+     Y R   CS C +R DGF + C KCKF+VDV CA
Sbjct: 211 LFLQSRSGFYDREFICSLCCQRRDGFAYHCHKCKFVVDVHCA 248

[Close]

BLAST of Tan0002687.1 vs. NCBI nr
Match: XP_023897934.1 (uncharacterized protein LOC112009826 [Quercus suber])

HSP 1 Score: 67.4 bits (163), Expect = 8.1e-08
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 6   VENSTLCYICK---ATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRRN 65
           V N+ +C  C     TPS Y C    S    F    CA+LP+   +P H H L L YR  
Sbjct: 303 VPNNKICDGCGRAILTPSFYRCV--ESNCSFFLHIFCAKLPKIKRHPLHQHPLTLTYRPG 362

Query: 66  SYCSSCLRRSDGFNFGCEKCKFIVDVKCAL 93
            +C +C +R +G  + CE+C F++DVKC+L
Sbjct: 363 FWCEACAQRCNGLVYYCERCIFVLDVKCSL 390

[Close]

BLAST of Tan0002687.1 vs. ExPASy TrEMBL
Match: A0A6P9EWE7 (uncharacterized protein LOC109008056 OS=Juglans regia OX=51240 GN=LOC109008056 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-09
Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 4   IGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRRN- 63
           +G+       +    P  Y C  C      F  + C ELPR+I +P H H L LR +   
Sbjct: 348 VGINKKCNACMRSIFPPFYNCTQCGF----FLHKACVELPRKIRHPLHQHPLILRSKATF 407

Query: 64  -SYCSSCLRRSDGFNFGCEKCKFIVDVKCAL 93
            S C +C R   GF + CEKCKF +DV+C+L
Sbjct: 408 CSVCKTCCRLCSGFTYNCEKCKFNIDVQCSL 434

[Close]

BLAST of Tan0002687.1 vs. ExPASy TrEMBL
Match: A0A7N2L4C4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 37/94 (39.36%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 6    VENSTLCYIC--KATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRL----RY 65
            V N+  CY C     P  Y C  CS     F    CA+LP++  +P H H L L     Y
Sbjct: 1339 VLNNQKCYACVRAILPPFYSCVNCSF----FLHESCAKLPQKKKHPLHQHPLTLLPTSPY 1398

Query: 66   RRNSY-CSSCLRRSDGFNFGCEKCKFIVDVKCAL 93
            R   + C +C R  +GFN+GCE C F +DV+C+L
Sbjct: 1399 RSEIFWCDACWRECNGFNYGCETCDFSLDVQCSL 1428

[Close]

BLAST of Tan0002687.1 vs. ExPASy TrEMBL
Match: A0A4S4ETH4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_005576 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 2   MLIGVENSTLCYICKATPST------YVCAPCSSGLINFFDRGCAELPREIDYPYH-HHA 61
           +++  ++  L Y C     T      YVC  C  GL++     CAE+P +I++P+H  H+
Sbjct: 151 LILCYKDKNLTYKCTCCSLTIDGDCLYVCLQC-KGLLH---HSCAEMPWKIEHPFHSSHS 210

Query: 62  LRLR-----YRRNSYCSSCLRRSDGFNFGCEKCKFIVDVKCA 92
           L L+     Y R   CS C +R DGF + C KCKF+VDV CA
Sbjct: 211 LFLQSRSGFYDREFICSLCCQRRDGFAYHCHKCKFVVDVHCA 248

[Close]

BLAST of Tan0002687.1 vs. ExPASy TrEMBL
Match: A0A6P8E162 (uncharacterized protein LOC116209642 OS=Punica granatum OX=22663 GN=LOC116209642 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 12  CYICKATPS--TYVCAPCSSGLINFFDRGCAELPREIDYPYH-HHALRLRYRRNS---YC 71
           C++CK  P   TY C  C   +++   + CAELP E+ + +H  H L L    +S   YC
Sbjct: 97  CHVCKQPPEGLTYCCRICKEFVLH---KSCAELPSELAHIFHPQHPLVLLPEASSNYLYC 156

Query: 72  SSCLRRSDGFNFGCEKCKFIVDVKCALREGNGK 99
           S C +RS+GF + C +C F +D +CAL++   K
Sbjct: 157 SVCHKRSEGFTYHCAECHFYLDKECALKKATVK 186

[Close]

BLAST of Tan0002687.1 vs. ExPASy TrEMBL
Match: A0A2I0I5M0 (Phorbol-ester/DAG-type domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_040527 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 12  CYICKATPS--TYVCAPCSSGLINFFDRGCAELPREIDYPYH-HHALRLRYRRNS---YC 71
           C++CK  P   TY C  C   +++   + CAELP E+ + +H  H L L    +S   YC
Sbjct: 371 CHVCKQPPEGLTYCCRICKEFVLH---KSCAELPSELAHIFHPQHPLVLLPEASSNYLYC 430

Query: 72  SSCLRRSDGFNFGCEKCKFIVDVKCALREGNGK 99
           S C +RS+GF + C +C F +D +CAL++   K
Sbjct: 431 SVCHKRSEGFTYHCAECHFYLDKECALKKATVK 460

[Close]

BLAST of Tan0002687.1 vs. TAIR 10
Match: AT2G21840.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.2e-06
Identity = 33/97 (34.02%), Postives = 46/97 (47.42%), Query Frame = 0


Query: 6   VENSTLCYIC--KATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYH-HHALRL----- 65
           +E    C +C  K   +   C  CS    +F    CAEL R   + +H +H+L L     
Sbjct: 406 LEEEGKCNMCGTKIHDNPCKCETCSFQSHDF----CAELGRPSKHQFHLNHSLTLLPNTP 465

Query: 66  RYRRNSYCSSCLRRSDGFNFGCEKCKFIVDVKCALRE 95
           R+ R   C SC     GFN  C  C FI+D+ CAL++
Sbjct: 466 RWFRRK-CESCKDDIGGFNLFCRICNFIIDINCALKD 497

[Close]

BLAST of Tan0002687.1 vs. TAIR 10
Match: AT4G01910.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 26/83 (31.33%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 12  CYICKATPSTYVCAPCSSGLINFFDRGCAE-LPREIDYPYH-HHALRLRYRRNSYCSSCL 71
           C   +A    Y C  C      F  + C + +   I++P H +H L L      +C  C 
Sbjct: 29  CGHFEAISDGYYCKRCDF----FVHKTCGDGVSEYIEHPSHPNHTLELCSNLRFHCDLCG 88

Query: 72  RRSDGFNFGCEKCKFIVDVKCAL 93
           RR++  ++ CE C FIVD+ CA+
Sbjct: 89  RRTNYLSYYCEICGFIVDLHCAM 107

[Close]

BLAST of Tan0002687.1 vs. TAIR 10
Match: AT2G21830.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04
Identity = 28/95 (29.47%), Postives = 43/95 (45.26%), Query Frame = 0


Query: 6   VENSTLCYIC--KATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYH-HHALRLRYR-- 65
           +E    C+IC  +   + + C  C+    NF    C EL +   + +H +H L L  +  
Sbjct: 402 LEGKEHCHICEKEILGNPWKCETCNFVTHNF----CVELGKPSRHRFHWNHLLTLMPKPV 461

Query: 66  --RNSYCSSCLRRSDGFNFGCEKCKFIVDVKCALR 94
               + C SC     GFN  C  C FI+ V CA++
Sbjct: 462 ATDMTSCKSCREDIKGFNLFCRICNFIIHVSCAMK 492

[Close]

BLAST of Tan0002687.1 vs. TAIR 10
Match: AT4G16015.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04
Identity = 26/87 (29.89%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 12  CYICKA------TPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYR--RNS 71
           C +CKA      + S Y C  C   +++   + CA+LP++   P+++    L     R S
Sbjct: 272 CMLCKACNYPIYSNSFYSCMECDDFILH---KKCADLPKKKIDPFYNMLTTLITNDIRIS 331

Query: 72  YCSSCLRRSDGFNFGCEKCKFIVDVKC 91
            C++C   S GF +  +  K I+DV+C
Sbjct: 332 ICNACQNVSQGFTYVSDDHKIILDVRC 355

The following BLAST results are available for this feature:

BLAST of Tan0002687.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002687.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579395.1	7.8e-27	59.34	hypothetical protein SDJN03_23843, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_035551576.1	1.2e-08	37.36	uncharacterized protein LOC109008056 [Juglans regia] >KAF5454028.1 hypothetical ...	[more]
XP_030958351.1	3.6e-08	39.36	uncharacterized protein LOC115980215, partial [Quercus lobata]	[more]
XP_028056396.1	4.7e-08	38.24	uncharacterized protein LOC114260456 [Camellia sinensis] >THG20191.1 hypothetica...	[more]
XP_023897934.1	8.1e-08	38.89	uncharacterized protein LOC112009826 [Quercus suber]	[more]

BLAST of Tan0002687.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9EWE7	6.0e-09	37.36	uncharacterized protein LOC109008056 OS=Juglans regia OX=51240 GN=LOC109008056 P...	[more]
A0A7N2L4C4	1.8e-08	39.36	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A4S4ETH4	2.3e-08	38.24	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0055...	[more]
A0A6P8E162	3.9e-08	37.63	uncharacterized protein LOC116209642 OS=Punica granatum OX=22663 GN=LOC116209642...	[more]
A0A2I0I5M0	3.9e-08	37.63	Phorbol-ester/DAG-type domain-containing protein OS=Punica granatum OX=22663 GN=...	[more]

BLAST of Tan0002687.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21840.1	6.2e-06	34.02	Cysteine/Histidine-rich C1 domain family protein	[more]
AT4G01910.1	1.5e-04	31.33	Cysteine/Histidine-rich C1 domain family protein	[more]
AT2G21830.1	2.6e-04	29.47	Cysteine/Histidine-rich C1 domain family protein	[more]
AT4G16015.1	2.6e-04	29.89	Cysteine/Histidine-rich C1 domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004146	DC1	PFAM	PF03107	C1_2	coord: 49..91 e-value: 9.5E-9 score: 35.4
None	No IPR available	SUPERFAMILY	57889	Cysteine-rich domain	coord: 19..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0002687	Tan0002687	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002687.1-exon	Tan0002687.1-exon-LG01:23729361..23729666	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002687.1-cds	Tan0002687.1-cds-LG01:23729361..23729666	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0002687.1	Tan0002687.1-protein	polypeptide