Tan0002044.1 (mRNA) Snake gourd v1

Overview
NameTan0002044.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 8459151 .. 8460017 (+)
Sequence length222
RNA-Seq ExpressionTan0002044.1
SyntenyTan0002044.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGAGGTAATAAAGAGAATTTGTATTGGTCAAGTTTAAAGTCTTTCATTTATTGCTTACTTGGCTCTAATGGTGGAGATGCGTCCGAGGCTGCAGCATCTCCATCTGCTGGACCAGAGGCCGCCATTGGAGCTGCAGCAAAGCATTTCTCTTCTGCTCACAAGCTGAAGTTCAGTTAAGCTTGTAGTTCATTCATGGAGAAAATATCTACTACTCCATACATGCTTGAGCAAGAGCTGATCAAATATCCCTGTTAAGCATGCATTATTCCAAGATTTTCCAGTTCAATACAATGTGACAGTAATATATTTGACATATATGATGCAACCTATGCAGATATGGTCATTTAAATACATAATTAGCTCATCAATTCAGCAAGAAAAGCATCCACTTTCTATAACCATGAAGTCAAAAGAATATGTTGATTATGCTTTTCTGGGCATAAAATTAAATACTGCGATGAGTTTCCATCTTATTTGTGTTCGTGATTTGGTGAATGGATGGTATGCTTTGTAACCATCAATGCCCCGGTCTACCCAGAAGCAACATATAGGGATTTTTAACATTGACCCAGTGTTTCAAAACAAGGGTTTCTATCCTTTTGCTGGCACTTTTTTTAAATATATATATATATATATATATTTACTCTCCCTCGTCCGGGTTCGGACTCTAAATTTTTCTCTTGCTCTCATTCTACCTTTCTATTTCTTCAATCTTTGCAATCACTTCTTTGAAATACACCAAAGAAGAAGAACAAGCCTCACCGATCTAAAAAAGGCATCAGAGAATCCGATCTTTAGAAACACTATTCTCGACGCCAGTCATCTTGTCTAGCTCCGACGCCTTGTAGCCAGAGGCAATGA

mRNA sequence

ATGGGAGGAGGTAATAAAGAGAATTTGTATTGGTCAAGTTTAAAGTCTTTCATTTATTGCTTACTTGGCTCTAATGGTGGAGATGCGTCCGAGGCTGCAGCATCTCCATCTGCTGGACCAGAGGCCGCCATTGGAGCTGCAGCAAAGCATTTCTCTTCTAAACACTATTCTCGACGCCAGTCATCTTGTCTAGCTCCGACGCCTTGTAGCCAGAGGCAATGA

Coding sequence (CDS)

ATGGGAGGAGGTAATAAAGAGAATTTGTATTGGTCAAGTTTAAAGTCTTTCATTTATTGCTTACTTGGCTCTAATGGTGGAGATGCGTCCGAGGCTGCAGCATCTCCATCTGCTGGACCAGAGGCCGCCATTGGAGCTGCAGCAAAGCATTTCTCTTCTAAACACTATTCTCGACGCCAGTCATCTTGTCTAGCTCCGACGCCTTGTAGCCAGAGGCAATGA

Protein sequence

MGGGNKENLYWSSLKSFIYCLLGSNGGDASEAAASPSAGPEAAIGAAAKHFSSKHYSRRQSSCLAPTPCSQRQ
Homology
[Close]
BLAST of Tan0002044.1 vs. NCBI nr
Match: KGN51999.1 (hypothetical protein Csa_008139 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 3  GGNKENLYWSSLKSFIYCLLGSNGG--DASEAAASPSAGPEAAIGAAAKHFSS------- 62
          G  KENL WS +KSFI CLLG N G  DAS AA SPS GPEAA+ AAAKHFSS       
Sbjct: 2  GDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPS-GPEAAMVAAAKHFSSAHKFGYL 61

Query: 63 --------KHYSRRQSS-CLAPTPC 70
                  KH  RR SS  ++ TPC
Sbjct: 62 KSWLDLVVKHERRRSSSYVMSNTPC 85

[Close]
BLAST of Tan0002044.1 vs. NCBI nr
Match: KAG6574028.1 (hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-07
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 8  NLYWSSLKSFIYCLLGSNGGD-------ASEAAASPSAGPEAAIGAAAKHFSSKHYSR 59
          NL WS+LKSFIYCLLG NGG        A+ AA SP  GPEAA+ AAAKHFSS H  R
Sbjct: 2  NLIWSTLKSFIYCLLGFNGGSPEAAMAAAAAAAPSPPTGPEAAMVAAAKHFSSAHKLR 59

[Close]
BLAST of Tan0002044.1 vs. ExPASy TrEMBL
Match: A0A0A0KT12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 3  GGNKENLYWSSLKSFIYCLLGSNGG--DASEAAASPSAGPEAAIGAAAKHFSS------- 62
          G  KENL WS +KSFI CLLG N G  DAS AA SPS GPEAA+ AAAKHFSS       
Sbjct: 2  GDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPS-GPEAAMVAAAKHFSSAHKFGYL 61

Query: 63 --------KHYSRRQSS-CLAPTPC 70
                  KH  RR SS  ++ TPC
Sbjct: 62 KSWLDLVVKHERRRSSSYVMSNTPC 85

The following BLAST results are available for this feature:
BLAST of Tan0002044.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0002044.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51999.12.2e-0755.29hypothetical protein Csa_008139 [Cucumis sativus][more]
KAG6574028.16.5e-0763.79hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0002044.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT121.1e-0755.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1[more]
BLAST of Tan0002044.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0002044Tan0002044gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0002044.1-exonTan0002044.1-exon-LG04:8459151..8459309exon
Tan0002044.1-exonTan0002044.1-exon-LG04:8459955..8460017exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0002044.1-cdsTan0002044.1-cds-LG04:8459151..8459309CDS
Tan0002044.1-cdsTan0002044.1-cds-LG04:8459955..8460017CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0002044.1Tan0002044.1-proteinpolypeptide