Spg039797.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg039797.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-H2 finger protein
Location	scaffold10: 45530013 .. 45530621 (-)
Sequence length	609
RNA-Seq Expression	Spg039797.1
Synteny	Spg039797.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGTGTCTGTTCACCACCGTCACCGTCCCCATCGCCTCCTCCTCGACGCCGACACGACGGCGGCGCCGTCGAATGGAAGCAGAACGCGGAATTCGTACAGCAACGAAGCGAATTTCGACACGAATATGGTGATAATCCTCGCCGCTTTACTCTGCGCGCTGATTTGCGCTCTCGGACTGAACTCAATCGTCCGGTGCGCACTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACGGGCGGCGGCTCCGCCACGCGCCTAGCTGCCACAGGGCTGAAGAAAAGCGCATTACGCCAGATTCCGGTCGCCGTTTACGGGTCGGAGTCGGGTCTAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCATCGCCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGGATTTCACGTTCGATGTATCGACACCTGGTTGGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTCGAACAACAGTCGAACTCTGAACCGGCGGAACCTGAAGCCGGCACCCGACCCGCCGGAAATTCGTCGGCCGGGGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTAGCTGA

mRNA sequence

ATGGCGATGGTGTCTGTTCACCACCGTCACCGTCCCCATCGCCTCCTCCTCGACGCCGACACGACGGCGGCGCCGTCGAATGGAAGCAGAACGCGGAATTCGTACAGCAACGAAGCGAATTTCGACACGAATATGGTGATAATCCTCGCCGCTTTACTCTGCGCGCTGATTTGCGCTCTCGGACTGAACTCAATCGTCCGGTGCGCACTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACGGGCGGCGGCTCCGCCACGCGCCTAGCTGCCACAGGGCTGAAGAAAAGCGCATTACGCCAGATTCCGGTCGCCGTTTACGGGTCGGAGTCGGGTCTAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCATCGCCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGGATTTCACGTTCGATGTATCGACACCTGGTTGGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTCGAACAACAGTCGAACTCTGAACCGGCGGAACCTGAAGCCGGCACCCGACCCGCCGGAAATTCGTCGGCCGGGGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTAGCTGA

Coding sequence (CDS)

ATGGCGATGGTGTCTGTTCACCACCGTCACCGTCCCCATCGCCTCCTCCTCGACGCCGACACGACGGCGGCGCCGTCGAATGGAAGCAGAACGCGGAATTCGTACAGCAACGAAGCGAATTTCGACACGAATATGGTGATAATCCTCGCCGCTTTACTCTGCGCGCTGATTTGCGCTCTCGGACTGAACTCAATCGTCCGGTGCGCACTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACGGGCGGCGGCTCCGCCACGCGCCTAGCTGCCACAGGGCTGAAGAAAAGCGCATTACGCCAGATTCCGGTCGCCGTTTACGGGTCGGAGTCGGGTCTAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGAGATTTCATCGCCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGGATTTCACGTTCGATGTATCGACACCTGGTTGGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGCTCGAACAACAGTCGAACTCTGAACCGGCGGAACCTGAAGCCGGCACCCGACCCGCCGGAAATTCGTCGGCCGGGGGCCAAGGTGAGATCTCGATAACTGTAGATGAAATTAGCTGA

Protein sequence

MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGTRPAGNSSAGGQGEISITVDEIS

Homology

[Close]

BLAST of Spg039797.1 vs. NCBI nr
Match: KAG7016045.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360.9 bits (925), Expect = 7.1e-96
Identity = 180/202 (89.11%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAMVS HHR RPHRLLLDA+TT APSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGG+A+RLAATGLKKSALR++PV VYGSESGLGIRETDCP
Sbjct: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SE  E +AG 
Sbjct: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           RPAGNSSA GQGEISI +D+IS
Sbjct: 223 RPAGNSSASGQGEISIPIDQIS 244

[Close]

BLAST of Spg039797.1 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.9 bits (925), Expect = 7.1e-96
Identity = 180/202 (89.11%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAMVS HHR RPHRLLLDA+TT APSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGG+A+RLAATGLKKSALR++PV VYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SE  E +AG 
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           RPAGNSSA GQGEISI +D+IS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of Spg039797.1 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 359.4 bits (921), Expect = 2.1e-95
Identity = 179/202 (88.61%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAMVS HHR RPHRLLLDA+TT APSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGG+A+RLAATGLKKSALR++PV VYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SE  E +AG 
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           RPAGNSSA GQGEISI +D+IS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of Spg039797.1 vs. NCBI nr
Match: KAG6578482.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359.0 bits (920), Expect = 2.7e-95
Identity = 179/202 (88.61%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAMVS HHR  PHRLLLDA+TT APSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPHPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGG+A+RLAATGLKKSALR++PV VYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SE  E +AG 
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           RPAGNSSA GQGEISI +D+IS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of Spg039797.1 vs. NCBI nr
Match: XP_022993116.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 359.0 bits (920), Expect = 2.7e-95
Identity = 179/202 (88.61%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAMVS HHR RPHRLLLDA+TT APSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGG+A+RLAATGLKKSALR++PV VYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SE  E +AG 
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           RPAGN SA GQGEISI +D+IS
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

[Close]

BLAST of Spg039797.1 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.0e-44
Identity = 97/163 (59.51%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 14  RLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQAN-APANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGSATR--------LAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGD 133
           RRF  +    +A+          AATGLKK AL+QIPV +YGS   + ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Spg039797.1 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.4e-43
Identity = 88/149 (59.06%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 21  TTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNH 140
                    A G+KK AL+ IPV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Spg039797.1 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.8e-41
Identity = 85/154 (55.19%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 13  HRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKI 132
              F   +   + T     GLKK  L++ PVA YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  G--FGLSSSAAAGTVADRAGLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Spg039797.1 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.1e-38
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 18  DADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGS-ATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKIKVLP 137
            E GG +   RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of Spg039797.1 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 36  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFE--TGGGSATRLAAT-G 95
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR S RF         S+TR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 96  LKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLA 155
           +KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 156 SHSSCPTCRQSLLE---------QQSNSEPAEP 177
            H +CP CR  L+E          Q++S  AEP
Sbjct: 169 QHLTCPKCRNCLVETCQKILGDFSQADSVTAEP 201

[Close]

BLAST of Spg039797.1 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.0e-95
Identity = 179/202 (88.61%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAMVS HHR RPHRLLLDA+TT APSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGG+A+RLAATGLKKSALR++PV VYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SE  E +AG 
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           RPAGNSSA GQGEISI +D+IS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of Spg039797.1 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 179/202 (88.61%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAMVS HHR RPHRLLLDA+TT APSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGG+A+RLAATGLKKSALR++PV VYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SE  E +AG 
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           RPAGN SA GQGEISI +D+IS
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

[Close]

BLAST of Spg039797.1 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 8.4e-95
Identity = 181/200 (90.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 3   MVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGL 62
           M S HHR R HRLLLDADTTAAPSNGSRTRNSY+NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGG+A+RL A+GLKKSALRQIPVAVYGSE+GL IRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGTRP 182
           LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQS SE A  EAG RP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSAGGQGEISITVDEIS 203
           AGNSSA GQGEISITVDEI+
Sbjct: 181 AGNSSASGQGEISITVDEIT 200

[Close]

BLAST of Spg039797.1 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.3e-92
Identity = 178/202 (88.12%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           M M S HHR RP RLLLD DTTA PSNGSRTRNSY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGG+A+RL ATGLKKSALRQIPVAVYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SE A  EAG 
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSAGGQGEISITVDEIS 203
           R AGNSSA GQGEISITVD I+
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]

BLAST of Spg039797.1 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.5e-91
Identity = 174/192 (90.62%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MAMVSVHHRHRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICAL 60
           MAM S HHRHRPHR LLD D TA PSNG+RTR+SYSNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCP 120
           GLNSIVRCALRCSRRFAFET GG++TRLAATGLKKSALRQIPVAVYGSESGL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSNSEPAEPEAGT 180
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SE A  EAG 
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RPAGNSSAGGQG 193
           RPAGNSSAGGQG
Sbjct: 181 RPAGNSSAGGQG 192

[Close]

BLAST of Spg039797.1 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-45
Identity = 97/163 (59.51%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 14  RLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQAN-APANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGSATR--------LAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGD 133
           RRF  +    +A+          AATGLKK AL+QIPV +YGS   + ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Spg039797.1 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 6.7e-44
Identity = 88/149 (59.06%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 21  TTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNH 140
                    A G+KK AL+ IPV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Spg039797.1 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 168.7 bits (426), Expect = 4.8e-42
Identity = 85/154 (55.19%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 13  HRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGSATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKI 132
              F   +   + T     GLKK  L++ PVA YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  G--FGLSSSAAAGTVADRAGLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Spg039797.1 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-39
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 18  DADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGS-ATRLAATGLKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKIKVLP 137
            E GG +   RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of Spg039797.1 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-31
Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 36  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFE--TGGGSATRLAAT-G 95
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR S RF         S+TR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 96  LKKSALRQIPVAVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLA 155
           +KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 156 SHSSCPTCRQSLLE---------QQSNSEPAEP 177
            H +CP CR  L+E          Q++S  AEP
Sbjct: 169 QHLTCPKCRNCLVETCQKILGDFSQADSVTAEP 201

The following BLAST results are available for this feature:

BLAST of Spg039797.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016045.1	7.1e-96	89.11	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023550807.1	7.1e-96	89.11	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R...	[more]
XP_022938777.1	2.1e-95	88.61	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]
KAG6578482.1	2.7e-95	88.61	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022993116.1	2.7e-95	88.61	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]

BLAST of Spg039797.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	5.0e-44	59.51	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	9.4e-43	59.06	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	6.8e-41	55.19	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	3.1e-38	51.33	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	1.4e-30	45.75	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of Spg039797.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FF16	1.0e-95	88.61	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	1.3e-95	88.61	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A5D3BXT6	8.4e-95	90.50	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0KAH2	2.3e-92	88.12	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A6J1BZW4	2.5e-91	90.63	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]

BLAST of Spg039797.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	3.6e-45	59.51	RING/U-box superfamily protein	[more]
AT5G05280.1	6.7e-44	59.06	RING/U-box superfamily protein	[more]
AT5G01880.1	4.8e-42	55.19	RING/U-box superfamily protein	[more]
AT1G49230.1	2.2e-39	51.33	RING/U-box superfamily protein	[more]
AT1G49220.1	1.0e-31	45.75	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 1.0E-7 score: 41.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 2.3E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.1057
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..166 e-value: 3.3E-22 score: 80.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..202
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 13..194
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 13..194
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 118..161 e-value: 5.66862E-17 score: 69.2529
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..169

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg039797	Spg039797	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg039797.1-cds	Spg039797.1-cds-scaffold10:45530013..45530621	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg039797.1	Spg039797.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane