Spg028466.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg028466.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H
Location	scaffold7: 10386108 .. 10388714 (+)
Sequence length	1326
RNA-Seq Expression	Spg028466.1
Synteny	Spg028466.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACGAAAATCAACCGATCACGAACGAGTCGAATCCCCTAGTTCGACTCCAAGCCCAGGAAACCGAGATTGCAGCGATTAAGGGGAGGATGAATGAGATGGGGCAGAACTTGACTGAAATCTTCAGTCTGTTGAAGAAACCCGAGTCTGTAAGGCACGAGGAAGAGCTTTTGAGCCGAGATCCTCAGAAGGGTAAAGGAATAGCAGACGAGGAGGTAGGGGATTCGGAGAGTGTAACTAGTCGAATGCACCATCCAGGGGATGACCAGCCCCAGAAGGAAGCTGGACCAAGTCGCAAAAAGGCTCGCAGAAATTCACCTCTGAAGCCAGTGCCAGGTATGTATATAGAGAATAATGGCAGGAAAAAGTTGGAGGCTTGAGCAGGGTCCAAGGCCGAGTAGGGCCAAAAGAGGCGAGAGCAGGAGCTATCCAAATGGTTGAAAGAGGAAGACAACCATCACGACTCCCACAGGAGGACTGAGAATGAAGACATAGAAGGGCTGGTTGGGCAGATGAAACCACCCTTCACTGACGAGATAATGGGAGGGGAGGTGTCGCATAAGTTTAAGATACCAAACTTCCCGCAGTATGACGGAAGGAAAGACCCGAAGCAGCATTTAGAAGCATACCTGACTTGGATGGATTTTCATGGGGCGAATGAAGCAACAAGGTGCCGAGCGTTCACGTTAACACTTACAGGTTTGGCAAGACAATGGTTCAGCAAGATACCACAGAAATCAATCGGGTCGTTTAAGGAGCTAGCACGAGCGTTTGTTACGCAATTCTTAAGGGCACGGAGCCGACAGAAACCTCAGATCAACCTACTGACAGTAAAACAGAGGCCCCGGGAAAGTCTGAAAGATTATATTAACAGATTTAGTAACGAAGTTTTGCAGGTAGAAGGCTATGACGATGGAGTTGCCTTGACCGTTGTGATTTCAGGTCTACAGGATGAAAGATTGCTCAACTCGATCGGTGAAAGCGAGCCGCGAACATATGTGGAATTCATGACCCGAGCACAAAGGTACATAAAGTGCCGAGGAGCTACTGAAATCCAAACAGGAAGATAGAGAGAGCCGGGGAGTTTCTATATCTGACCGACATCGAGAAGACAGAGGAAAAGGGCGCCGGGTAGAAGATGGAGGTCGGAGCCGGCATGACCACTCCTCGACCAATGGTCGAGACCGAGCAGAGGCCAAAGAGCCGCGGGGCCTCGCAGAGCCAGAAGCCAAGTATAACAGGTATACACCGCTAACAGCTCCACTTGAACAGGTTTTGGCCGCAATACAGGATACAAATCTGTTGAAGCGTTCGGAAAAGTTGAGGTCAGACCCAGACAGGAGAAACATGAATAAATATTGCATGTTCCACGGAGACCACGGCCACACGACCCGAGAATGCATACAGCTAAGGGATAAAATAGAAACCCTAATCCGAGAGGGCTACCTCAAGGAATTCATGGGACAAGACAAAGGGAAAATACCACTACCGACAGATCAAGGTAAATGAGGCAACAACCCACCACTCGAGATACGAACAATCCTGGGAGGACCATTGGGTGGAGATTCGAGTAGAAAACGAAAAGCAGTAGTTCGAGAAGCACAGTTAGAGTCGAGAGAGTAAGGTATGTACTCACTCCTGCTCCATGAAAACTCACTAAACTTAGAGTTTACAGAGAGAGGCTGCAGGGATACACCACCCACACAATGACGCGCTGGTAATAGCCCTAACAGTCGCCAATGTCAAAGTACATTGAATTTTAATTGATGGAGGAAGCTCGGCTGATGTCCTCTCAACTGCTGCGTTCGAGGCCATGAAGCTGGGAAGCGATCGTCTGAGGCCGAGCCTTACACCGCTGGTGGGGTTTGGCGGAGAAAAAGTGAGCCCAAGGGGAAGCATCGAACTGCCAGTAACGTTTGGGAAAGGACCGTAGACAGTTACAAGATTGGTCAACTTTCTAGTGGTGGATTGCGTCCCAGCATATAATGCCATTCTGGGGGGACCAACCTTGCACGGGCTTAAAGCAGTAGCCTCAACGTACCACCAAGTCCTGAAATTCCCAACTGAAGAGGGTGTAGGAGAGGTGCGCGGTGAGTAGAAGATGTCCAAAGAGTGTTACTTTATGGCGCTCAGGAATATGGACAGGAAGGCCCAAACAATGCCCGCCTCGGGAAATAGCAGATGCCGAGCATTTGAGGGATCGAATCATCCTCTTCCAATGGAGCACTGATTTTCCTCTGTTATGTTTCCTGTCAAAAGTTTGTTAAAGTTTTAGGTTTCTTTTATTTTCAGTAGCAAATTAGCAAGATGTAATCAAATCCATTTACTTGATAATAGAATGTCTTGGCTTTCATTTGAAACAGCTTGCACTTGAAGAGAGGCCAAAGAATTTCCTCGCCCTCCCCAAGTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGGACACAACACTTGAAGAGGGGGAATTTCCTCCGCCTCCCCAAGCTTTTTCCCAGAAGAGTGTACGCACCCTTGGGATGACCACAGTGCTTGAAGAGAGGCCCGAGAACTTCCTCAACCTCCCCAAGCTTTTCCCCAGAAGAGTGTACGCACCCTTGGGATGA

mRNA sequence

ATGGAGCACGAAAATCAACCGATCACGAACGAGTCGAATCCCCTAGTTCGACTCCAAGCCCAGGAAACCGAGATTGCAGCGATTAAGGGGAGGATGAATGAGATGGGGCAGAACTTGACTGAAATCTTCAGTCTGTTGAAGAAACCCGAGTCTGTAAGGCACGAGGAAGAGCTTTTGAGCCGAGATCCTCAGAAGGGTAAAGGAATAGCAGACGAGGAGGTAGGGGATTCGGAGAGTGTAACTAGTCGAATGCACCATCCAGGGGATGACCAGCCCCAGAAGGAAGCTGGACCAAGTCGCAAAAAGGCTCGCAGAAATTCACCTCTGAAGCCAGTGCCAGGTCTACAGGATGAAAGATTGCTCAACTCGATCGGTGAAAGCGAGCCGCGAACATATGTGGAATTCATGACCCGAGCACAAAGAGGAAAAGGGCGCCGGGTAGAAGATGGAGGTCGGAGCCGGCATGACCACTCCTCGACCAATGGTCGAGACCGAGCAGAGGCCAAAGAGCCGCGGGGCCTCGCAGAGCCAGAAGCCAAGTATAACAGGTATACACCGCTAACAGCTCCACTTGAACAGGTTTTGGCCGCAATACAGGATACAAATCTGTTGAAGCGTTCGGAAAAGTTGAGGTCAGACCCAGACAGGAGAAACATGAATAAATATTGCATGTTCCACGGAGACCACGGCCACACGACCCGAGAATGCATACAGCTAAGGGATAAAATAGAAACCCTAATCCGAGAGGGCTACCTCAAGGAATTCATGGGACAAGACAAAGGGAAAATACCACTACCGACAGATCAAGGCCATGAAGCTGGGAAGCGATCGTCTGAGGCCGAGCCTTACACCGCTGGTGGGGTTTGGCGGAGAAAAAGTGAGCCCAAGGGGAAGCATCGAACTGCCAGTAACGTTTGGGAAAGGACCGTAGACAGTTACAAGATTGGTCAACTTTCTAGTGGAATATGGACAGGAAGGCCCAAACAATGCCCGCCTCGGGAAATAGCAGATGCCGAGCATTTGAGGGATCGAATCATCCTCTTCCAATGGAGCACTGATTTTCCTCTGTTATGTTTCCTGTCAAAACTTGCACTTGAAGAGAGGCCAAAGAATTTCCTCGCCCTCCCCAAGTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGGACACAACACTTGAAGAGGGGGAATTTCCTCCGCCTCCCCAAGCTTTTTCCCAGAAGAGTGTACGCACCCTTGGGATGACCACAGTGCTTGAAGAGAGGCCCGAGAACTTCCTCAACCTCCCCAAGCTTTTCCCCAGAAGAGTGTACGCACCCTTGGGATGA

Coding sequence (CDS)

ATGGAGCACGAAAATCAACCGATCACGAACGAGTCGAATCCCCTAGTTCGACTCCAAGCCCAGGAAACCGAGATTGCAGCGATTAAGGGGAGGATGAATGAGATGGGGCAGAACTTGACTGAAATCTTCAGTCTGTTGAAGAAACCCGAGTCTGTAAGGCACGAGGAAGAGCTTTTGAGCCGAGATCCTCAGAAGGGTAAAGGAATAGCAGACGAGGAGGTAGGGGATTCGGAGAGTGTAACTAGTCGAATGCACCATCCAGGGGATGACCAGCCCCAGAAGGAAGCTGGACCAAGTCGCAAAAAGGCTCGCAGAAATTCACCTCTGAAGCCAGTGCCAGGTCTACAGGATGAAAGATTGCTCAACTCGATCGGTGAAAGCGAGCCGCGAACATATGTGGAATTCATGACCCGAGCACAAAGAGGAAAAGGGCGCCGGGTAGAAGATGGAGGTCGGAGCCGGCATGACCACTCCTCGACCAATGGTCGAGACCGAGCAGAGGCCAAAGAGCCGCGGGGCCTCGCAGAGCCAGAAGCCAAGTATAACAGGTATACACCGCTAACAGCTCCACTTGAACAGGTTTTGGCCGCAATACAGGATACAAATCTGTTGAAGCGTTCGGAAAAGTTGAGGTCAGACCCAGACAGGAGAAACATGAATAAATATTGCATGTTCCACGGAGACCACGGCCACACGACCCGAGAATGCATACAGCTAAGGGATAAAATAGAAACCCTAATCCGAGAGGGCTACCTCAAGGAATTCATGGGACAAGACAAAGGGAAAATACCACTACCGACAGATCAAGGCCATGAAGCTGGGAAGCGATCGTCTGAGGCCGAGCCTTACACCGCTGGTGGGGTTTGGCGGAGAAAAAGTGAGCCCAAGGGGAAGCATCGAACTGCCAGTAACGTTTGGGAAAGGACCGTAGACAGTTACAAGATTGGTCAACTTTCTAGTGGAATATGGACAGGAAGGCCCAAACAATGCCCGCCTCGGGAAATAGCAGATGCCGAGCATTTGAGGGATCGAATCATCCTCTTCCAATGGAGCACTGATTTTCCTCTGTTATGTTTCCTGTCAAAACTTGCACTTGAAGAGAGGCCAAAGAATTTCCTCGCCCTCCCCAAGTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGGACACAACACTTGAAGAGGGGGAATTTCCTCCGCCTCCCCAAGCTTTTTCCCAGAAGAGTGTACGCACCCTTGGGATGACCACAGTGCTTGAAGAGAGGCCCGAGAACTTCCTCAACCTCCCCAAGCTTTTCCCCAGAAGAGTGTACGCACCCTTGGGATGA

Protein sequence

MEHENQPITNESNPLVRLQAQETEIAAIKGRMNEMGQNLTEIFSLLKKPESVRHEEELLSRDPQKGKGIADEEVGDSESVTSRMHHPGDDQPQKEAGPSRKKARRNSPLKPVPGLQDERLLNSIGESEPRTYVEFMTRAQRGKGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGKHRTASNVWERTVDSYKIGQLSSGIWTGRPKQCPPREIADAEHLRDRIILFQWSTDFPLLCFLSKLALEERPKNFLALPKFPQKSVRTPGMDTTLEEGEFPPPPQAFSQKSVRTLGMTTVLEERPENFLNLPKLFPRRVYAPLG

Homology

[Close]

BLAST of Spg028466.1 vs. NCBI nr
Match: MQL96670.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-20
Identity = 78/253 (30.83%), Postives = 110/253 (43.48%), Query Frame = 0


Query: 112 VPGLQDERLLNSIGESEPRTYVEFMTRAQRG-------KGRRVEDGGRSRHDHSSTNGRD 171
           + G +D  L  ++G  +P T  E ++ AQR           R E G +S     S NG D
Sbjct: 370 IQGTRDGFLQRTLGVQQPATLAELLSIAQRHAACEESLAASRAEQGEQSDKKRPSDNGSD 429

Query: 172 RAEAKEPRGLAEPE--AKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNMNKY 231
           R   K  R    P     +  YTPLT   EQ+LA I++   ++  +++RSDP +R+ NKY
Sbjct: 430 RDRKKGRRNGDSPRRPRPFTNYTPLTVAPEQILAEIRNEAFVRWPQRMRSDPRKRDQNKY 489

Query: 232 CMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEP 291
           C FH DHGH T EC QL+D+IE LI+ GYL  F                           
Sbjct: 490 CRFHRDHGHDTSECRQLKDEIEDLIKRGYLGRF--------------------------- 549

Query: 292 YTAGGVWRRKSEPKGKHRTASNVWERTVDSYKIGQLSSGIWTGRPKQCPPREIADAEHLR 351
                V R +  P+ + RT         +  +I  ++ G   GR      R+ A   H+ 
Sbjct: 550 -----VRRNEERPRRRDRTPEQPINNEPNGQEINVIAGGFGAGRESTRSRRDYARRVHVV 589

Query: 352 DRIILFQWSTDFP 356
           DR     WS  +P
Sbjct: 610 DRPSAV-WSAPYP 589

[Close]

BLAST of Spg028466.1 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 8.1e-20
Identity = 68/195 (34.87%), Postives = 106/195 (54.36%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQR----GK---GRRVEDGGRSRHDHSSTNGR--- 173
           G++DE L  S G+  P T+ E ++RAQR    G+    +R  DG R+      +  +   
Sbjct: 319 GVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTDPKRERSGDKPQG 378

Query: 174 DRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNMNKYC 233
            R E ++     +P  K+ +YTP T P+EQVL  I+D  LLK  E++++   +R+  +YC
Sbjct: 379 SRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYC 438

Query: 234 MFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPY 293
           +FH DHGH T++C  L++++E LIR GYLKE++ + K        Q  E+ K  +     
Sbjct: 439 LFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPK------ATQNGESDKSPAREIRT 498

Query: 294 TAGGVWRRKSEPKGK 299
             GG   R+S  K K
Sbjct: 499 IMGGPIERESGRKRK 507

[Close]

BLAST of Spg028466.1 vs. NCBI nr
Match: MQL97644.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-19
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 0


Query: 112 VPGLQDERLLNSIGESEPRTYVEFMTRAQRG-------KGRRVEDGGRSRHDHSSTNGRD 171
           + G +D  L  ++G  +P T  E ++ AQR           RVE G +S     S NG D
Sbjct: 161 IQGTRDGFLQRTLGVQQPATLAELLSIAQRHAACEESLAASRVEQGEQSDKKRPSDNGSD 220

Query: 172 RAEAKEPRGLAEPE--AKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNMNKY 231
           R   K  R    P     +  YTPLT  LEQ+LA I++   ++  +++RSDP +R+ NKY
Sbjct: 221 RDRKKGRRNGDSPRHPRPFTNYTPLTVALEQILAEIRNEAFVRWPQRMRSDPRKRDQNKY 280

Query: 232 CMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK 261
           C FH DHGH T EC QL+D+IE LI+  YL  F+ +++
Sbjct: 281 CRFHRDHGHDTSECRQLKDEIEDLIKRSYLGRFVRRNE 318

[Close]

BLAST of Spg028466.1 vs. NCBI nr
Match: XP_030970463.1 (uncharacterized protein LOC115990823 [Quercus lobata])

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-19
Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQ-------------RGKGRRVEDGGRSRHDHSST 173
           G+  +  ++ + E EP++  E +  AQ             R +  R++      H+  + 
Sbjct: 87  GVNSDLFIHKLYEKEPQSMAELVHSAQNFMNAEDAIIAKKRKRSERMDANPSRHHEQGTR 146

Query: 174 NGRDRAEAKEPRGLAEP--EAKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRN 233
             + R + +  R   +P    +  +YTPL APLEQVL  I+D   LK  EKL+ DP++RN
Sbjct: 147 PKKGRTDERRDRESKKPGLPVRNQQYTPLNAPLEQVLMQIKDDPSLKWPEKLKGDPNKRN 206

Query: 234 MNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK 261
            NKYC FH DHGH T EC  L+ +IE LIR+G L+ F+G+D+
Sbjct: 207 RNKYCRFHRDHGHNTDECFDLKQQIENLIRQGKLRGFLGRDQ 248

[Close]

BLAST of Spg028466.1 vs. NCBI nr
Match: XP_030936700.1 (uncharacterized protein LOC115961955 [Quercus lobata])

HSP 1 Score: 107.1 bits (266), Expect = 4.0e-19
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQR----------GKGRRVE--DGGRSRHDHSSTN 173
           G+  +  ++ + E EP+T  E +  AQ            K +++E  D   +RH     +
Sbjct: 13  GVHSDLFIHKLYEQEPQTMAELVHSAQNFMNAEDAIIAKKRKKIEKMDANPTRHSEQGPH 72

Query: 174 -GRDRAEAKEPRG-LAEPEAKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNM 233
             + R E K+ R   A P  +  +YTPL  PL+QVL  I+D   LK  EK++ DP++RN 
Sbjct: 73  LKKGRTEDKKDRDRKAGPSVRSQQYTPLNMPLDQVLMQIKDDPSLKWPEKMKGDPNKRNR 132

Query: 234 NKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQD 260
           NKYC FH DHGH T EC  L+ +IE LIR+G L+ F+G+D
Sbjct: 133 NKYCRFHRDHGHDTDECFDLKQQIENLIRQGKLRSFLGRD 172

[Close]

BLAST of Spg028466.1 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-20
Identity = 68/195 (34.87%), Postives = 106/195 (54.36%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQR----GK---GRRVEDGGRSRHDHSSTNGR--- 173
           G++DE L  S G+  P T+ E ++RAQR    G+    +R  DG R+      +  +   
Sbjct: 319 GVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTDPKRERSGDKPQG 378

Query: 174 DRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNMNKYC 233
            R E ++     +P  K+ +YTP T P+EQVL  I+D  LLK  E++++   +R+  +YC
Sbjct: 379 SRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYC 438

Query: 234 MFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPY 293
           +FH DHGH T++C  L++++E LIR GYLKE++ + K        Q  E+ K  +     
Sbjct: 439 LFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPK------ATQNGESDKSPAREIRT 498

Query: 294 TAGGVWRRKSEPKGK 299
             GG   R+S  K K
Sbjct: 499 IMGGPIERESGRKRK 507

[Close]

BLAST of Spg028466.1 vs. ExPASy TrEMBL
Match: A0A6J1DDR5 (uncharacterized protein LOC111020115 OS=Momordica charantia OX=3673 GN=LOC111020115 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.7e-19
Identity = 59/172 (34.30%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQR------------GKGRRVEDGGRSRHDHSSTN 173
           GL DE L   +GE  P T+ E + +A++            G+  +  D GR+  D   T+
Sbjct: 7   GLADETLTVKLGEEAPATFTEVLQKAKKVIDGQELIRIKTGRPEKKIDKGRAGKDKEKTD 66

Query: 174 GR----------DRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDT---NLLKRSE 233
            +           R + +           Y RYTP T P+ ++L  I+++    LLKR E
Sbjct: 67  SKSKDKGPSSSSSRDDYRRSDSTHNRSRPYERYTPTTIPISEILTNIEESEMEKLLKRPE 126

Query: 234 KLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK 261
           KLR DP++RN +KYC+FH DHGH+T  C +L+ +IE LI++ Y K+F+G+ +
Sbjct: 127 KLRGDPEKRNKDKYCLFHRDHGHSTSNCWELKRQIEDLIQDDYFKKFVGKPR 178

[Close]

BLAST of Spg028466.1 vs. ExPASy TrEMBL
Match: A0A6J1E1B3 (uncharacterized protein LOC111025521 OS=Momordica charantia OX=3673 GN=LOC111025521 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-18
Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQR-------------------GKGRRVEDGGRS- 173
           GL DE L   +GE  P T+ E + +A++                    +GR  +D G++ 
Sbjct: 99  GLADETLTVKLGEEAPATFAEVLQKAKKVIDGQELLRTKTGRPEKKIDQGRAGKDKGKAD 158

Query: 174 --RHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDT---NLLKRSE 233
               D  S++   +A+ +           Y RYTP T P  ++L  I++T    LLKR +
Sbjct: 159 SKSKDKGSSSSSSQADYRRSDSSRNRSRPYERYTPTTIPSSEILTNIEETGMEKLLKRPK 218

Query: 234 KLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK 261
           KLR DP++RN +KYC FH DHGH T  C +L+ +IE LI+ GY K+F+G+ +
Sbjct: 219 KLRGDPEKRNKDKYCRFHRDHGHNTSNCWELKRQIEDLIQYGYFKKFVGKSR 270

[Close]

BLAST of Spg028466.1 vs. ExPASy TrEMBL
Match: A0A6J1DZ52 (uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025612 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.3e-18
Identity = 67/197 (34.01%), Postives = 105/197 (53.30%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQRGKG-------RRVEDGGRS--RHDHSSTNGRD 173
           G++DE L  S G+  P T+ E ++RAQ+          ++  +G R+  + + S      
Sbjct: 3   GIKDEHLSFSFGKKTPSTFAEALSRAQKYMSAEEFFHLKKELEGKRADQKRERSGEKPLS 62

Query: 174 RAEAKEPR--GLAEPEAKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNMNKY 233
               K+ R  G  +   K+ +YTP T PLEQVL  I+D  LLK  E +++ P++R+  +Y
Sbjct: 63  SKWEKQDRVVGQKDLPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPETMKAPPNKRSKGRY 122

Query: 234 CMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEP 293
           C+FH DHGH T +C  L++++E LIR+GYLKE++        L      E   +S   E 
Sbjct: 123 CLFHRDHGHATLDCFDLKEEVEGLIRKGYLKEYVDD------LKATPNRENDNKSPTREI 182

Query: 294 YT-AGGVWRRKSEPKGK 299
            T  GG   ++S+ K K
Sbjct: 183 RTIMGGSTEQESDRKRK 193

[Close]

BLAST of Spg028466.1 vs. ExPASy TrEMBL
Match: A0A6J1DS14 (uncharacterized protein LOC111022993 OS=Momordica charantia OX=3673 GN=LOC111022993 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.3e-18
Identity = 63/173 (36.42%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 114 GLQDERLLNSIGESEPRTYVEFMTRAQ---------RGKGRRVED--------------G 173
           GL DE L   +GE  P T+VE + +A+         R K  R+E                
Sbjct: 7   GLADETLTVKLGEEAPATFVEVLQKAKKVIYGQELLRTKTSRLERQIDQKKTNQERRKVD 66

Query: 174 GRSRHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDT---NLLKRS 233
            +S+   SS++G  R E +  +        Y RYTP T P+ ++L  I++    NLLKR 
Sbjct: 67  SKSKDKGSSSSG-GRTEYRRSKIGPSRSRLYERYTPTTIPISEILTNIEENGMENLLKRH 126

Query: 234 EKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK 261
           EKL+ DP +R+ +KYC FH DHGH T  C +L+ +IE LI++GY K+F+G+ +
Sbjct: 127 EKLQGDPQKRHKDKYCCFHRDHGHNTSNCWELKGQIEDLIQDGYFKKFVGKPR 178

The following BLAST results are available for this feature:

BLAST of Spg028466.1 vs. NCBI nr


Match Name	E-value	Identity	Description
MQL96670.1	1.3e-20	30.83	hypothetical protein [Colocasia esculenta]	[more]
XP_022158830.1	8.1e-20	34.87	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
MQL97644.1	3.1e-19	39.24	hypothetical protein [Colocasia esculenta]	[more]
XP_030970463.1	3.1e-19	36.42	uncharacterized protein LOC115990823 [Quercus lobata]	[more]
XP_030936700.1	4.0e-19	38.75	uncharacterized protein LOC115961955 [Quercus lobata]	[more]

BLAST of Spg028466.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028466.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	3.9e-20	34.87	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DDR5	9.7e-19	34.30	uncharacterized protein LOC111020115 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1E1B3	1.6e-18	34.88	uncharacterized protein LOC111025521 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DZ52	6.3e-18	34.01	uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DS14	6.3e-18	36.42	uncharacterized protein LOC111022993 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Spg028466.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..302

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg028466	Spg028466	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg028466.1-cds	Spg028466.1-cds-scaffold7:10386108..10386447	CDS
Spg028466.1-cds	Spg028466.1-cds-scaffold7:10387054..10387135	CDS
Spg028466.1-cds	Spg028466.1-cds-scaffold7:10387227..10387612	CDS
Spg028466.1-cds	Spg028466.1-cds-scaffold7:10387922..10388074	CDS
Spg028466.1-cds	Spg028466.1-cds-scaffold7:10388245..10388369	CDS
Spg028466.1-cds	Spg028466.1-cds-scaffold7:10388475..10388714	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg028466.1	Spg028466.1-protein	polypeptide