Spg027459.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg027459.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold13: 20902353 .. 20904905 (-)
Sequence length285
RNA-Seq ExpressionSpg027459.1
SyntenySpg027459.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCGGCGCAGCTGCTGGAGGAAGAAGATGGAGGGGTGAGAGAAGAGGATGAAGAAGAGGGTTAGGGTTTAGTTTTTAAAATAACTAAAATAATAATATTTTTTATTATTTTTTATTTATTTTTATTTTAAAATAAAAAAAATAATTTTTTATATTAAAATAATAGTGCCACGTCAGCAACCGTTAGAAATTAACAGAAAAATTAACGGCAGGGAACAAAATGCTCCTTATCTCAAACCTCAGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAAGTGTCACTTAACCCAAACCTCAGGAACCAAAAGTGTATTTTTCCCAAATAATAATATAATAATAATAAAATTATTATTATTATTATTAAAATATAATAATAATAAAAAATTAAAAAATTCATTATTATTATTAAAAAAAAATACTTCTCTCTCCTCCTCCCCACCTTCCCTCTATTCTTCTCCCGCCGCCCCCACCTCTCTTTTTTCTCCTCGCCGCCGGAGCTCATCCCCGTCGCCGGAGATCCTCACGCGAACAAAATGGAAAACGAAACGAAACGGAACAAAAGGAGAGAACGAATGAGACCATGGCCGCCGCGAACCAAAAATCAAGAATGAAACGAAATGGAAACAAGAAAACGAAACGGAAACCATGGGAGCCGGAAAACAAGAAACGAAACGGAAACAAGAAAACGAGACAGAAACGAGAGACACGAACAAGAAAACGAGAGGGAGATGGAGAGAGAGTCGCCGGAGAACGAAACGAAAGTCCTCTAATTCTCTCCCTCTCCTTCATCTTCTCGGCGACCGCACCCCTTTTTTTAAACAAATCCCCCTCCCCCCCGTCTTCTTCAAACCCCGCCGCCTCAACCCTTATTCTTCTTTTTAGCCTAAATCAGCCTACCCGAACATCGCCGCTTTGAAGCTACTGCGTTGCTGCTCGTGTGGGTTTTGGTTCCTTTTTTCTCAGATCTGAAGATGGGAGTGGATTCAGGCACACGCGAGAGGAAGGGAGGGTGAGAAGAAGAGGGGTTCAGATTTTGAAGAAGAAGGAGCTCCGGCGGTATTGGGGAGGAGCTCCGACGACGGTGGGAGGATCTCCGACGGCGACAGGGATGAGCATCGGCGGCGGGGAGAAAAAAGAGAGAAGGTGGGGGCGGTGGGAGAAGAATAGAGGGAAGGAGGGGAGGAGAGAGAAATATATTTTTTAATAATAAAAATGATTTTTTTTTTATTTTTTTTATTATCATTATTATATTTTAACAATAATAATAATAATATTATTATTTTAATTAAAAATCAATATTTTATTATTTTAAACTGCCACGTCAGTCCTAGAGGGACTCAATAGAATCATTTCCGAAACAGTAGGGATTTGATTGTTCGATTTTGAAATGTAGGGACCTATTAGAAACTGACTCGAAACATGAGGGACCAAAAATGTATTTTACCCAAAGAATTTTCTCCATCTAACACCACAAGTAGTAATTTGTAAATTGATTCAGAAGAAATCAAAAGGATTAGACTTAATTTTTTTTACTCTGTACATGAATCAATTTTAACATTGAACTTTTAATTTCATCTTCTTTATACTTGGTAAGTAGCGCCATTAATATCCTCAGTTAATTCATTTGACTGATTATAGTCTAGTTTATTTCCACCCATCTAAACCTAACCTAGTATAAGTGGTGAAATTAGTATGCTCAATTTTTTTTTTCTAAATTAAAATTTTAATTCATATTATTTTTTTTTAAATAAAGATTTGTGACTGATTAGGATGATTTTTATAGTTAGATGTAATTTTTTTTTTTTAAGGTATTAACTCTTTTAATTGTGTTCTTTGTTGCTAGATTTGAGTTTCTATAATTGACGTACTAAAAAAAAATTGTGCTATTTGTTGCTAGATTTGAGTTTTTTTATAATCTTTTTTATTCTAAGATTAGATTCTTTCCTGATCGGGGTTTAGAGATTTGTTTGACATGATTTTGGTTGTTTTGTTGGTTAAATTTTATATGATTTATTGGTTGGTATAGGGGAGATATTAATCGAGGTAATTGAAAATTCAAGGTTAAAATTGATTCACTCTCTTAAAGATGGTCAAAAATCTAACTTTTCCCATTATATTTTAATATACATTAATCTAGGACTCTGTATTGCAGGTTTCTAACCTTGCTTCTGAGGCGAAGAAGGAAAGAATTGGCTTGAGCAAGGAGGTGTCAAAAATAAGCAACTACGGCATCTCTGTCTGATAAATTCAAATTCAACGTTGGCTCAGCCCCAACAGTCTTACTCCATCATAATCCGTTTCAAAATTCACTTGGTCTGGTCTGAATCTGCCTGCATATCCTCTTTCATCTTTATTTTTTCTTTTATTTTCTGTTGGAGGAGGAATAGTTTTCTCTTTTTCCTTTCTTTTTATAGTGCTCGGCGAAAATAAGTTTTGAAAACTATCAATTGAGTAGTACCATTGAAAGGTGAATTTAATTGTTCAGTATAATAATTATATATGCAATACCAATAGAGTTGGTTCAATTTTAAGTCTAAAACTTTC

mRNA sequence

ATGTGGGCGGCGCAGCTGCTGGAGGAAGAAGATGGAGGGGCACACGCGAGAGGAAGGGAGGGTGAGAAGAAGAGGGGTTCAGATTTTGAAGAAGAAGGAGCTCCGGCGGTATTGGGGAGGAGCTCCGACGACGGTGGGAGGATCTCCGACGGCGACAGGGATGAGCATCGGCGGCGGGGAGAAAAAAGAGAGAAGGTTTCTAACCTTGCTTCTGAGGCGAAGAAGGAAAGAATTGGCTTGAGCAAGGAGGTGTCAAAAATAAGCAACTACGGCATCTCTGTCTGA

Coding sequence (CDS)

ATGTGGGCGGCGCAGCTGCTGGAGGAAGAAGATGGAGGGGCACACGCGAGAGGAAGGGAGGGTGAGAAGAAGAGGGGTTCAGATTTTGAAGAAGAAGGAGCTCCGGCGGTATTGGGGAGGAGCTCCGACGACGGTGGGAGGATCTCCGACGGCGACAGGGATGAGCATCGGCGGCGGGGAGAAAAAAGAGAGAAGGTTTCTAACCTTGCTTCTGAGGCGAAGAAGGAAAGAATTGGCTTGAGCAAGGAGGTGTCAAAAATAAGCAACTACGGCATCTCTGTCTGA

Protein sequence

MWAAQLLEEEDGGAHARGREGEKKRGSDFEEEGAPAVLGRSSDDGGRISDGDRDEHRRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV
Homology
[Close]
BLAST of Spg027459.1 vs. NCBI nr
Match: XP_011656868.1 (RGS1-HXK1-interacting protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 226 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 263

[Close]
BLAST of Spg027459.1 vs. NCBI nr
Match: XP_008459726.1 (PREDICTED: uncharacterized protein LOC103498769 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 228 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of Spg027459.1 vs. NCBI nr
Match: XP_011656867.1 (RGS1-HXK1-interacting protein 1 isoform X1 [Cucumis sativus] >KGN46566.2 hypothetical protein Csa_005221 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 228 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of Spg027459.1 vs. NCBI nr
Match: TYK24760.1 (uncharacterized protein E5676_scaffold266G003230 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 226 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 263

[Close]
BLAST of Spg027459.1 vs. NCBI nr
Match: KAG6575225.1 (RGS1-HXK1-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 226 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 263

[Close]
BLAST of Spg027459.1 vs. ExPASy TrEMBL
Match: A0A6J1L5I2 (uncharacterized protein LOC111499304 OS=Cucurbita maxima OX=3661 GN=LOC111499304 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 228 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of Spg027459.1 vs. ExPASy TrEMBL
Match: A0A5D3DNB0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003230 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 226 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 263

[Close]
BLAST of Spg027459.1 vs. ExPASy TrEMBL
Match: A0A0A0KA31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108580 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 172 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 209

[Close]
BLAST of Spg027459.1 vs. ExPASy TrEMBL
Match: A0A6J1H5U3 (uncharacterized protein LOC111460300 OS=Cucurbita moschata OX=3662 GN=LOC111460300 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 228 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 265

[Close]
BLAST of Spg027459.1 vs. ExPASy TrEMBL
Match: A0A1S3CAD0 (uncharacterized protein LOC103498769 OS=Cucumis melo OX=3656 GN=LOC103498769 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 57  RRRGEKREKVSNLASEAKKERIGLSKEVSKISNYGISV 95
           R     R +VSNLASEAKKERIGLSKEVSKISNYGISV
Sbjct: 228 REASRFRTQVSNLASEAKKERIGLSKEVSKISNYGISV 265

The following BLAST results are available for this feature:
BLAST of Spg027459.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656868.16.6e-0481.58RGS1-HXK1-interacting protein 1 isoform X2 [Cucumis sativus][more]
XP_008459726.16.6e-0481.58PREDICTED: uncharacterized protein LOC103498769 [Cucumis melo][more]
XP_011656867.16.6e-0481.58RGS1-HXK1-interacting protein 1 isoform X1 [Cucumis sativus] >KGN46566.2 hypothe... [more]
TYK24760.16.6e-0481.58uncharacterized protein E5676_scaffold266G003230 [Cucumis melo var. makuwa][more]
KAG6575225.16.6e-0481.58RGS1-HXK1-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Spg027459.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027459.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L5I23.2e-0481.58uncharacterized protein LOC111499304 OS=Cucurbita maxima OX=3661 GN=LOC111499304... [more]
A0A5D3DNB03.2e-0481.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KA313.2e-0481.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108580 PE=4 SV=1[more]
A0A6J1H5U33.2e-0481.58uncharacterized protein LOC111460300 OS=Cucurbita moschata OX=3662 GN=LOC1114603... [more]
A0A1S3CAD03.2e-0481.58uncharacterized protein LOC103498769 OS=Cucumis melo OX=3656 GN=LOC103498769 PE=... [more]
BLAST of Spg027459.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg027459Spg027459gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg027459.1-three_prime_utrSpg027459.1-three_prime_utr-scaffold13:20902353..20902654three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg027459.1-cdsSpg027459.1-cds-scaffold13:20902655..20902744CDS
Spg027459.1-cdsSpg027459.1-cds-scaffold13:20903754..20903909CDS
Spg027459.1-cdsSpg027459.1-cds-scaffold13:20904867..20904905CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg027459.1Spg027459.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane