Spg026723.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg026723.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L27
Location	scaffold6: 19323544 .. 19328205 (+)
Sequence length	705
RNA-Seq Expression	Spg026723.1
Synteny	Spg026723.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTTCCTCAAGCCGAACAAAGCCGTCGTCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTTATCAAGCTCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTCGATCTTAAGGACGTCGTCACCGTCGATTCCTTGCAGTCGAAGGATAAGAAGGTCACCGCCGCTAAGGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGAAGAGGCTCCTTCAGTTGTGGGTTTGTTCTGGATTACTCTCGTATTAGGTTACTGAGCAGCTTTGTTTTTACTTTATTTCCCCCCTTTTTTTCGAGTAATCGTACGTTCTATATTACGAAGGTAGTTTGTTTGGGTGTCTAATTTTTGTCTGGACGTACTCTAATCTTTTGGATGAGAAATTTCTGGGTTTATAATGCTACATTTAAGACTTCACTTATTTATCTTCGTATTCGTTTCTGTCTTATGTGACATTATTGCTATTCGTATATTGAGCGTTTTTGTTTCATTGAAATCTGTCTGTTTCCAAGCTTTACTTTTTCTCTAGAAGTGGAATTCTGATTTTCACTGAAATAAACAATTCTCTATAGAATAGATAAGTCTGTAATCGTGAGGAGGTAAGTAGATAATTCGAGGAAAGAATTGCTGAGAAAGAATTGCTGAGAAAGAATTGTTCTTAGCTTGATTGAGAAGATATTTCACAGCTTTCTTAAATTACAAATTTCCATCTGTTGGATTTATATTTAATGGCGGGCTATTTTGGTCGAAGTTTTATAAGGATAACTTTTATCCACGAGGACTTTTATAGACAGGTTGTGGTCTTTTTGTGATTGTTATTAGGGGTTTATAAGCTGGTTCTGCTACAATTTTGTTCAAGGAAAAGTGAGAACCAATGCTTAAACGAATCTTTTGATAAGCTGCCTGACCCTTTAGCTAAATCTAATTGATTCAACTGATGTTTATTGGTCAAACTGGTCCAAACCAACTTCGCTTGATTGCTTTCTACATGTTTTGGCCTTCAGGCATAATTGTTTTTGAGGTGAGATCCGCTGCTTACTTTCAATCTAACCTGTTTATTTTTAGTTGAGCAGATGATTTGGGATGATTGATGCCTTTCTTCTTTGCTTGATTGAACTTTGAAGCTATACTTCCAATATTGTTTTGTTGAGGAAACTCTAGATTATTCAGAAGTTGGGAATTTAAATTTAAATTTACCTTATCTGATTTGATAGAATTATCTTTGTTAACAAATTGTTGGAAAGTGATTTGGATCTTAGTGGTGAAAAAAACTAAGGACCCACCTGATAACGATTTGGTTTTTTAAAATTTCGTTTGTTTTCTCCCAATTTCCTCACCATGATTTTCATTCTTATTAAGAAACATTTGAATTCTTAGCCAAATTTAAAAAACAAAAACAAGTTTTTTGAAGCAGAGTTTTTTTTTTAGTTTACAATATTTGACTTGGTTTTTTAAAATATGGGAAAATAACAAAAATGAAGAAACTTATGAGTGAAAGTAGTATTTATCAAATGGGACAGTAAATTTGTTCTTCCCTTCTATTCCTTATCAATTATGAATAAGTTGGAGTATATCATAGAAGCCTTTTTTTTGTTCATTATGTTCTATCAGGATCACTCTTAATATAAACACATGTAGAAAGTTGAAAATGTTATTGTACTGATGTTCTCATTCTTAATAGCAGTAGAATAGCAGTCATACACACCTATGTACCACAATTTTTTCCATCTACTGTAGTCTAAGGACTTCCAAGTCGAACAATTAAAACAAAGATCACAAGTCAATTTTCTCAAAAGAAGATTTCAAATTCCATACGAATTGTTTGGACTATGGTTAACAATTACATTAAATTCCTCTATGCCTCCTGAAAATACATAATTAAAGTTTGATTGGATGTTTAAACTTACACATCTTATAAAGACAATATTCTTTGGACATGTCACATCTGAAAGTAGAAAATAGGGAATGAAACTTACCACCCCTGTCCGTTTATAAATCAGTGATCAGTTTAAATCACATAGACTACCTTCTCAGTGCTTCTATGATCACTGTCAACCGTAAAATAAAGGAAACCGTAATTTAAGTTGAGGCAAAGATCTAGGTAGTTTATGTCGAGATTCATTCGATTAGAGTAAAAGTGGATTTACATTATTGAATTTGCAAAGAGTAAAAGTGGATTTACATTATTGAATTTGCAATCTCAAGTATTTGAAATTAGGAATTAGATCTTTCTGTAACCATATTTTACAAATGTTCGGTTATGAAAAAAAATTCGACTGACTCAAAGATTTTCCAACTAAATCATGGATTCTTTTGGTGGCCAATTTTAAAAAATGTCCATAATTAATAAAGGAAAAATACATTTTTGGTGCATGAGGTTTGAGTTAGGTTTTATTTTAGTAGGTTTGGATTTCGTTACGCTCCTTCCATCCAATTTTTCATTAAATTCTAATGGTTTGCTGACGTAACACCATTTTTTATTAGAAAATTATTATTTTTTAAATAGTAATAAATAAATTAGAAAAATATATTTTTTTAAATTTCATTTTTTCCTCCCTTCTTCTTCCTCTTCCTCCTCACCACCACCACCACCCTACAACTGCCGGCCGACCGTCGCCGCCAGTCAATTTTTTTTTTTGTTTTCCTCTTTTTCTCTTTCTTTTCTCCTTCTTTTCTCTTCTTTTCTCCTTTATTTCTTCTTCTCTTCTCCTTTTTGTTTATTTTCTTTCTTTTTTAAAATAGAAAAGAGGGGAGGAGGAACTCCTCCCTCCCCATTTCTTTCTTTTTTTTTTTTTTTTTTTAAGTGAAAAGAGGAGGCTCCTCCCTCCCCGTTCCAATTGATGGCATCACTGCATCTAATATCAAAACAAAGAAGGTTCATTAAAAAAAAAAAAAAAAAACTTTTTTGAATACCCCTCCCACTAAAATTTCATTATACTGCAAAACAACCAAAGATTAAGAAAAATGGCCCATCATTATTAACCAGTATAAGGTTTTTTTTTGGAAAAGTAAAAAAAAAATGGAAAAAATTAGACGAGCCATTTTCAAAGTATTTTGAAAAATCATGTGTCGCGCTTGTCCCTTTGGTCACACCTCTTGAAGAGGCGTGACACACCTCCTTTTCTTCTTTTTTTTTTTTTTTTTTTGAATTTTTAATTATTTGTCAAATCTCTGTCAAATCAACGGGTGTGTTCAACCCATTTTTTAAATTTATTTTATTTTGTTTAATAATTATTATAAATTATTAATGATAACATAATAATTATGTTTTTTTTTAATGATTATGTTTTTTTGATGATTGATTTTTCTTTAAATTTTGAAGTTTGCATTTTTTTTTAAATAACTCTCTATAATTTAGATGTTTTAGGTATTGTATTAAAAAGCTAGGTTAAAATTGTTTTAAAAAAATGTTTCCTCTACATTCACACTTTTATTTCTAAAATGAAATATCATAATCTAATATGACTTAGAGTGTTTTTTTGTTCCAATTATGATAGCTCTTAAAAAAAAAACAAACAAACACCATTCCAATTATCAATAATCAATTCACTATTGAGTTGTCATAAGTCTTTTAGCAATATCATTATGAAGTTAAACATACTTGTGATTTTTTAAAAAATAATTATAAACCAAATTGAGAACTTTTATTTGAAAATTATTATTGTTAGAAAGAATTATTAACATATTTTAAAAAATTTTAACTTCACCTCAATGATTAATTATCAATTTCTACAAGAACAACTATTTTTTTTTAAAGAAAAACCAGTACTAATTAGCAATTTTAGTACACTACATAAGTAATTTAGATTAGCGATTCAATACATTGCATTACAAAATCCATATTTATTTACTGTAAATGCAAGTAAAAATAAGATTGAAATTGAGTTTTAGACTTATGAAATGAAATACACTAATATTTATGAAATTTACAATTACAAATAGCATCCTTATGAGTCTTGGCTAGAAGATGATCTTCTACTGTGCCTAGCTCTTGATCGATGAGTTACATATTGACCTCGATCACCTCAACCTCTAATATTCACTATATCACCCTAGTCCCTAATGTGTATACCCTGACTAATGTTTCGATATGTCACATACTGATCTTTAGGGGGATGATAAGTATGTGAGAATTGACCTTCTTCCATCGTTCTTAATCCCGGATGGTCGAATGGAGAGCTCATTGGAAATGATGCAAACATCGGAGGAGTCTGCATTAGTAAGTCAGGGGAGAAAAATGGGTCTACGTATGATTGTTGAAAAGGTGATGGTGGTTGAGGTACACAGGGAACTCATATTGGAATGGATCACTGTGCTTCGATGGATCATTCTGTTGTTGAGCTGGATCATCGTGTTGCTCAGGTGGATTATCTTGTTGCTGGGCAGGAGCACCTTGTTGCTGAAGAGGATCATCTTCACTTTGAAAACGGTGCACCCCCGTTCTCATATAGGATTTGA

mRNA sequence

ATGGTGAAGTTCCTCAAGCCGAACAAAGCCGTCGTCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTTATCAAGCTCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTCGATCTTAAGGACGTCGTCACCGTCGATTCCTTGCAGTCGAAGGATAAGAAGGTCACCGCCGCTAAGGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGTAATCGTACGTTCTATATTACGAAGGGGGATGATAAGTATGTGAGAATTGACCTTCTTCCATCGTTCTTAATCCCGGATGGTCGAATGGAGAGCTCATTGGAAATGATGCAAACATCGGAGGAGTCTGCATTAGGAACTCATATTGGAATGGATCACTGTGCTTCGATGGATCATTCTGTTGTTGAGCTGGATCATCGTGTTGCTCAGGTGGATTATCTTGTTGCTGGGCAGGAGCACCTTGTTGCTGAAGAGGATCATCTTCACTTTGAAAACGGTGCACCCCCGTTCTCATATAGGATTTGA

Coding sequence (CDS)

ATGGTGAAGTTCCTCAAGCCGAACAAAGCCGTCGTCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTTATCAAGCTCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTCGATCTTAAGGACGTCGTCACCGTCGATTCCTTGCAGTCGAAGGATAAGAAGGTCACCGCCGCTAAGGAGACCAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGTAATCGTACGTTCTATATTACGAAGGGGGATGATAAGTATGTGAGAATTGACCTTCTTCCATCGTTCTTAATCCCGGATGGTCGAATGGAGAGCTCATTGGAAATGATGCAAACATCGGAGGAGTCTGCATTAGGAACTCATATTGGAATGGATCACTGTGCTTCGATGGATCATTCTGTTGTTGAGCTGGATCATCGTGTTGCTCAGGTGGATTATCTTGTTGCTGGGCAGGAGCACCTTGTTGCTGAAGAGGATCATCTTCACTTTGAAAACGGTGCACCCCCGTTCTCATATAGGATTTGA

Protein sequence

MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLSNRTFYITKGDDKYVRIDLLPSFLIPDGRMESSLEMMQTSEESALGTHIGMDHCASMDHSVVELDHRVAQVDYLVAGQEHLVAEEDHLHFENGAPPFSYRI

Homology

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BLAST of Spg026723.1 vs. NCBI nr
Match: XP_004147740.1 (60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 1.7e-64
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

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BLAST of Spg026723.1 vs. NCBI nr
Match: KAE8649234.1 (hypothetical protein Csa_014974 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 1.7e-64
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 29  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 88

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER
Sbjct: 89  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 148

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 149 FKTGKNRWFFTKL 161

[Close]

BLAST of Spg026723.1 vs. NCBI nr
Match: XP_004147739.1 (60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical protein Csa_014739 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 3.7e-64
Identity = 128/133 (96.24%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. NCBI nr
Match: XP_008451849.1 (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo] >KAA0062918.1 60S ribosomal protein L27-like [Cucumis melo var. makuwa] >TYK16424.1 60S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 6.3e-64
Identity = 129/133 (96.99%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. NCBI nr
Match: XP_022931548.1 (60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022942298.1 60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022983312.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_022985030.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_023521538.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023548326.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023551847.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >KAG6577087.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG6600449.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.6 bits (649), Expect = 8.3e-64
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.2e-58
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV++LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDS+K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-57
Identity = 110/133 (82.71%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-57
Identity = 110/133 (82.71%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.1e-53
Identity = 99/133 (74.44%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +KP KAV++LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.9e-52
Identity = 106/137 (77.37%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           M KFLKPNKAV++LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDS+K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVTVDSLQSKDKKVTAAKETKKR 120
           K  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV  D LQ++DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFTKL 134
             ERFKTGKNRWFFTKL
Sbjct: 121 LAERFKTGKNRWFFTKL 136

[Close]

BLAST of Spg026723.1 vs. ExPASy TrEMBL
Match: A0A0A0KVB4 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 8.1e-65
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy TrEMBL
Match: A0A0A0KXF9 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.8e-64
Identity = 128/133 (96.24%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy TrEMBL
Match: A0A5A7V5M7 (60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002210 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 3.1e-64
Identity = 129/133 (96.99%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy TrEMBL
Match: A0A1S3BT89 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 3.1e-64
Identity = 129/133 (96.99%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. ExPASy TrEMBL
Match: A0A6J1JA75 (60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483122 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 4.0e-64
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-58
Identity = 110/133 (82.71%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-58
Identity = 110/133 (82.71%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-54
Identity = 99/133 (74.44%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +KP KAV++LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKL 134
           FKTGKNRWFFTKL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spg026723.1 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 201.8 bits (512), Expect = 5.9e-52
Identity = 100/123 (81.30%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKT 124
           FKT
Sbjct: 121 FKT 123

The following BLAST results are available for this feature:

BLAST of Spg026723.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147740.1	1.7e-64	98.50	60S ribosomal protein L27 [Cucumis sativus]	[more]
KAE8649234.1	1.7e-64	98.50	hypothetical protein Csa_014974 [Cucumis sativus]	[more]
XP_004147739.1	3.7e-64	96.24	60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical protein Csa...	[more]
XP_008451849.1	6.3e-64	96.99	PREDICTED: 60S ribosomal protein L27-like [Cucumis melo] >KAA0062918.1 60S ribos...	[more]
XP_022931548.1	8.3e-64	97.74	60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022942298.1 60S riboso...	[more]

BLAST of Spg026723.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05462	3.2e-58	83.46	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q8LCL3	2.7e-57	82.71	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
P51419	2.7e-57	82.71	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q9SKX8	3.1e-53	74.44	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]
P41101	9.9e-52	77.37	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]

BLAST of Spg026723.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB4	8.1e-65	98.50	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1	[more]
A0A0A0KXF9	1.8e-64	96.24	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1	[more]
A0A5A7V5M7	3.1e-64	96.99	60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BT89	3.1e-64	96.99	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1	[more]
A0A6J1JA75	4.0e-64	97.74	60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483122 PE=3 SV=1	[more]

BLAST of Spg026723.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22230.1	1.9e-58	82.71	Ribosomal L27e protein family	[more]
AT4G15000.1	1.9e-58	82.71	Ribosomal L27e protein family	[more]
AT2G32220.1	2.2e-54	74.44	Ribosomal L27e protein family	[more]
AT4G15000.2	5.9e-52	81.30	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	PANTHER	PTHR10497:SF16	60S RIBOSOMAL PROTEIN L27	coord: 1..133
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..133 e-value: 1.9E-29 score: 101.9
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 1..133
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 1..135 e-value: 1.4E-57 score: 195.5
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 6..88 e-value: 3.19859E-45 score: 143.863
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 2..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg026723	Spg026723	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg026723.1-cds	Spg026723.1-cds-scaffold6:19323544..19323944	CDS
Spg026723.1-cds	Spg026723.1-cds-scaffold6:19324047..19324071	CDS
Spg026723.1-cds	Spg026723.1-cds-scaffold6:19327859..19327966	CDS
Spg026723.1-cds	Spg026723.1-cds-scaffold6:19328035..19328205	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg026723.1	Spg026723.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome