Spg024286.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg024286.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA-binding protein 24
Location	scaffold4: 18984914 .. 18987722 (-)
Sequence length	1074
RNA-Seq Expression	Spg024286.1
Synteny	Spg024286.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCTCTATCTCTCTCTCTCTCTCTCCTTCTTCATCAATATCATATTGTCCTTCCTTGGATCATATTACCAATTCATTATCAGACCCCTCTCTATAAATCAAATCATTTTCCACCCTCAAAACAAAACAGTAATGATTTTCTCGTTAAGGGTATCGTTGTTTTGAGGAATCTGGATACTTGTCGTTCTTTCTGTATGTGCAAAACCAAAAAGGGCTAGTTTTTATTATTATTATTATTATTATTATTGTTATTAAAAAAAAAAAAGAAAAAAGAAAAGAAAAGAAAAAAGAAATCAGCATTCTAATCGTCGTGGTCGTCCTCGAGAAAAATGGGACTCCATTGATTTGGTCTTGAAAACGTGTGGGAGATTTGTGTGCATTTAGTTATTGGGAGAGGGGGCATATTTTTGTGTTTCTCTTCTCTCTATTTCCCCTATGTCTCAGCAACAACAACAACAGAGGCAATTTCATAACATCAGCAACAGCAGCAGCAGCAGCACCACCACCCTTGGCCTTGGCCTTGGACCCCAATACAATAATGACACCACTTTCACCAAAATCTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAGGCATACAATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAGAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTTTCCACATTTAATTTCTCCTTTTTCTTTTTTCTTTCTTTCTTTCTCTTCCTCTCCAAATGGATTTGGGGTTTCATTCATTTTGTTTTCAGGTCACGTTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTCATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCCTCCTCCCACCCCTCAACAACATGGTTCTTTTTCCATTCTTTTACCTTTCATCTCATCCATGGATCATTCAATTTTTCACATGCAAACACATGGGATTTTCTTCATCAATCTGCATTTGTTTTTGTTCTGGAGGAATATGTCAAATCTAAACAAAATTCACAAATTTGCAGGTGGTGGTGGTGGTGGTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCCCCTTCTTACCATGTCTCTTCATCATCTTACATTCATCAGCCCACTGGTCAATATTCGTTCCCTCTTTCAGCTTATGGGTAAGGTTGAAACAAATGCATTCACAAACCCAATTTTCACATCTTCCTTTTTCTCATTCAAACTGTCCTTTCTCTATCTTTTGTCCTAATTTCAGGTATGCTGGATATTCGCAAGACAGAATTTATCCATTGGTGCGAATGTTTGAATGTTTATCTGTCTCTATGTGTCTTGTTTCTTTTTGGTTTAGTCTTTTTGATTTTCTTGGCATTGATTTGATCTGAGTGTCGTGTTTTCGTTGCAGAACTATTACGGTGTTTACGGGGGCCAACAATTTTCGCCTTATTACTCTGCAAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCTTTCTACGCTCAAAGTAGCCAGGGGTACGGCTTCGGAATCCAGTATCCACACATAATGCAGTATCCATATCTTCCTCAGCAGCACGGTTCGACCGGTATCCTATCACTTCCTGGCTCGACCGCGACAGGAACGACCAATGCAGGTGCTAAATCAATACAAATGCTTGTAATATAATCATTTTTTGTGTCAATGATGTTGGGGCATTGTTATCTAAAGAATGTCATCTTGTTTGGAGCATGTTGGTTTTGAAAGTAGATTGGAGATTTATGTGCAAAATGTAACAGGTGCAACAGCGACAACGATTATTGCGGTTGGGTCGGGCCCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACAGAATTCTTCTGAGTTAATCTCAACTGGATGACAGTAATGCCTTCTTTGTCACACGCTAACCACATCGACAAAGCTTGGAGAAAAAAAAACGTCGAGGGAATACTGAATAATAATGGCAAGTTTTTAAGTCGTGTGATTCGATAAGAAGGATGATGGAAAAGAAATTCATGTTCGAGCATCATCGAGTCGTTGGTTAAAGTCGGTAACAAACAAACATTCGAGAGAGAATACAAAGTTGCTTCAGTAACATCATATCCCATCTCTATGAACATTATTTAAGTTTGGTCCAGTGTATTTGAGAGGAGTCTGCAAGTAGTTTGTTAGAAATAGGTGAAGAATTTTATTCATTCATGTATTAAGCGAAAAGACGGGGAACCGAAAGACGAAGGGTTTGGATTCTTGGATTCCCGTCTTTCCCTCTGACTGCAACGAGACGATCGTGTTGGGGAAGCACGGAGCATCCTATGACACAGTCTTGTTTATATGATTAACAGTGAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCTTCACAATTTCTGGTTGGTCAACAAGGAAAGGCAAGCTCCAAAAGCTTAGCTGGTTGATGTGTAATTGATGGATCTTCTTTTGATTAAAATACTTTTGGAGGGGTTGGATTAGTTAGAAAAAGATATGTGTCTAATTTGTTTGAGCAAAATTATTGCCTCTTTTGCTGCTGTTGTTTCACATATCACTATCAGTTGGTTTCTTTTTGGTTATTAGGATTCTTTGCTTTACCATAATCACTTCTTTTGGACTTTGCAGACTGTGTCTGGAATCCAAAGGGTCCTAATAGTTAATTGTGTGTGTGTTTTTTTTTATTACTATTTCTTTTACTTTTACCTTTTTAATTATTATTATTATTATTATTTTTTGGGAGCTTCTGTC

mRNA sequence

ATGTCTCAGCAACAACAACAACAGAGGCAATTTCATAACATCAGCAACAGCAGCAGCAGCAGCACCACCACCCTTGGCCTTGGCCTTGGACCCCAATACAATAATGACACCACTTTCACCAAAATCTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAGGCATACAATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAGAACACTGGCAGATCCAAGGGTTATGGCTTTGTCACGTTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTCATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCCTCCTCCCACCCCTCAACAACATGGTTCTTTTTCCATTCTTTTACCTTTCATCTCATCCATGGATCATTCAATTTTTCACATGCAAACACATGGGATTTTCTTCATCAATCTGCATTTGTTTTTGTTCTGGAGGAATATGTCAAATCTAAACAAAATTCACAAATTTGCAGGTGGTGGTGGTGGTGGTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCCCCTTCTTACCATGTCTCTTCATCATCTTACATTCATCAGCCCACTGGTCAATATTCGTTCCCTCTTTCAGCTTATGGGTATGCTGGATATTCGCAAGACAGAATTTATCCATTGGTGCGAATGTTTGAATGTTTATCTAACTATTACGGTGTTTACGGGGGCCAACAATTTTCGCCTTATTACTCTGCAAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCTTTCTACGCTCAAAGTAGCCAGGGGTACGGCTTCGGAATCCAGTATCCACACATAATGCAGTATCCATATCTTCCTCAGCAGCACGGTTCGACCGGTATCCTATCACTTCCTGGCTCGACCGCGACAGGAACGACCAATGCAGGTGCAACAGCGACAACGATTATTGCGGTTGGGTCGGGCCCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACAGAATTCTTCTGAGTTAATCTCAACTGGATGA

Coding sequence (CDS)

ATGTCTCAGCAACAACAACAACAGAGGCAATTTCATAACATCAGCAACAGCAGCAGCAGCAGCACCACCACCCTTGGCCTTGGCCTTGGACCCCAATACAATAATGACACCACTTTCACCAAAATCTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAGGCATACAATGAGAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAGAACACTGGCAGATCCAAGGGTTATGGCTTTGTCACGTTTAAGGATCCTGATGCTGCCATTAGAGCTTGTCAAAACCCTTCCCCTGTCATCGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCTCATAAGCCTCCTCCTCCCACCCCTCAACAACATGGTTCTTTTTCCATTCTTTTACCTTTCATCTCATCCATGGATCATTCAATTTTTCACATGCAAACACATGGGATTTTCTTCATCAATCTGCATTTGTTTTTGTTCTGGAGGAATATGTCAAATCTAAACAAAATTCACAAATTTGCAGGTGGTGGTGGTGGTGGTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACCCCCCCTTCTTACCATGTCTCTTCATCATCTTACATTCATCAGCCCACTGGTCAATATTCGTTCCCTCTTTCAGCTTATGGGTATGCTGGATATTCGCAAGACAGAATTTATCCATTGGTGCGAATGTTTGAATGTTTATCTAACTATTACGGTGTTTACGGGGGCCAACAATTTTCGCCTTATTACTCTGCAAATGGGATTTCGGGACCGGCTGGAATGTTTCAAAATCTCTATCCTTTCTACGCTCAAAGTAGCCAGGGGTACGGCTTCGGAATCCAGTATCCACACATAATGCAGTATCCATATCTTCCTCAGCAGCACGGTTCGACCGGTATCCTATCACTTCCTGGCTCGACCGCGACAGGAACGACCAATGCAGGTGCAACAGCGACAACGATTATTGCGGTTGGGTCGGGCCCTTCACAAGCTTCTTCTGCAGTAGCATCTGAACAGAATTCTTCTGAGTTAATCTCAACTGGATGA

Protein sequence

MSQQQQQQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGGGRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNYYGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGSTGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG

Homology

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BLAST of Spg024286.1 vs. NCBI nr
Match: XP_038906691.1 (RNA-binding protein 24-B [Benincasa hispida])

HSP 1 Score: 481.9 bits (1239), Expect = 4.9e-132
Identity = 261/351 (74.36%), Postives = 272/351 (77.49%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           QQRQFHNIS+S+++S+    L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI
Sbjct: 3   QQRQFHNISSSNNNSS----LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPT
Sbjct: 63  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
           PQ                        HG+                              G
Sbjct: 123 PQ------------------------HGV------------------------------G 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRGASGIVTPP+YHVSSSSYIHQPT QYSFPLS YG+AGYSQDRIYPL        NY
Sbjct: 183 GRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPL--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSANGISGPAGMFQNLYP+YAQSSQGYGFGIQYPH+MQYPYLPQQHGS
Sbjct: 243 YGVYGGQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGS 286

Query: 307 TGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG 358
           TGILSLPGS A GTT  GA ATTI+ VGSGPSQASSAVASE NSSELISTG
Sbjct: 303 TGILSLPGSNAIGTTTTGAIATTIMGVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Spg024286.1 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 479.6 bits (1233), Expect = 2.4e-131
Identity = 259/351 (73.79%), Postives = 272/351 (77.49%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           QQRQFHNI++S++SS+    L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI
Sbjct: 3   QQRQFHNINSSNNSSS----LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPT
Sbjct: 63  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
           PQ                        HG+                              G
Sbjct: 123 PQ------------------------HGV------------------------------G 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRGASGIVTPP+YHVSSSSYIHQPT QYSFPLS YG+AGYSQDRIYPL        NY
Sbjct: 183 GRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPL--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPH+MQYPYLPQQHGS
Sbjct: 243 YGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGS 286

Query: 307 TGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG 358
           TGILSLPGS A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 303 TGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Spg024286.1 vs. NCBI nr
Match: XP_004140591.1 (RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_005255 [Cucumis sativus])

HSP 1 Score: 477.6 bits (1228), Expect = 9.2e-131
Identity = 258/351 (73.50%), Postives = 271/351 (77.21%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           QQRQFHNI++S++SS+    L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI
Sbjct: 3   QQRQFHNINSSNNSSS----LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPT
Sbjct: 63  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
           PQ                        HG+                              G
Sbjct: 123 PQ------------------------HGV------------------------------G 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRGASGIVTPP+YHVSSSSYIHQPT QYSFPLS YG+AGYSQDRIYPL        NY
Sbjct: 183 GRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPL--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFG+QYPH+MQYPYLPQQH S
Sbjct: 243 YGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSS 286

Query: 307 TGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG 358
           TGILSLPGS A GTT +G TATTI AVGSGPSQAS AVASE NSSELISTG
Sbjct: 303 TGILSLPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of Spg024286.1 vs. NCBI nr
Match: KAA0039913.1 (RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding protein 24-B [Cucumis melo var. makuwa])

HSP 1 Score: 454.5 bits (1168), Expect = 8.3e-124
Identity = 251/351 (71.51%), Postives = 264/351 (75.21%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           QQRQFHNI++S++SS+    L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI
Sbjct: 3   QQRQFHNINSSNNSSS----LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPT
Sbjct: 63  LEAVVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
           PQ                        HG+                              G
Sbjct: 123 PQ------------------------HGV------------------------------G 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRGASGIVTPP+YHVSSSSYIHQPT QYSFPLS YG+AGYSQDRIYPL        NY
Sbjct: 183 GRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPL--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPH+MQYPYLPQQHGS
Sbjct: 243 YGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGS 278

Query: 307 TGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG 358
           TGILSLPGS A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 303 TGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of Spg024286.1 vs. NCBI nr
Match: KAG7025354.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 428.7 bits (1101), Expect = 4.9e-116
Identity = 240/354 (67.80%), Postives = 254/354 (71.75%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           Q R FH  SN+S          +G QY NDTTFTKIFVGGLAWETQRHTMRR+FEQFGEI
Sbjct: 3   QPRPFH--SNNS----------VGGQY-NDTTFTKIFVGGLAWETQRHTMRRFFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP    
Sbjct: 63  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP---- 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
             QH                                                     GGG
Sbjct: 123 --QH-----------------------------------------------------GGG 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRG SGIVTPP+YHVSSSSY+HQPT QY FPLSAYGY+GYSQDRIYP+        NY
Sbjct: 183 GRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPM--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSAN I GPAGMFQNLYP+YAQSSQGY FG+QYPH+MQYPYLPQQHGS
Sbjct: 243 YGVYGGQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGS 276

Query: 307 TGILSLPGSTATGTTNAGATATTIIAV---GSGPSQASSAVASEQNSSELISTG 358
           TGILSLP STATGTT+AGA ATT   +   GSGP Q SSAVA+E NSSE+ISTG
Sbjct: 303 TGILSLPVSTATGTTSAGAAATTTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of Spg024286.1 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-27
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 36  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 95
           DT  TK+FVGGLAW+T +  M  +F ++G+ILEAV+I+DK T RSKGYGFVTFKD  AA 
Sbjct: 13  DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72

Query: 96  RACQNPSPVIDGRRANCNLASLGAHKPPPPT---PQQ 130
           RAC++ +P+I+GRRANCNLASLG      PT   PQQ
Sbjct: 73  RACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ 109

[Close]

BLAST of Spg024286.1 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.9e-26
Identity = 66/120 (55.00%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 36  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 95
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 96  RACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGSFSILLPFISSMDHSIFHMQTHGI 155
           RAC++P+P+IDGR+AN NLA LGA KP    P     F+  +P I    H  F  + +GI
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRVMQP----GFTFGVPQI----HPAFIQRPYGI 117

[Close]

BLAST of Spg024286.1 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.9e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 36  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 95
           DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 96  RACQNPSPVIDGRRANCNLASLGA 120
           RAC++P+P+IDGR+AN NLA LGA
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA 90

[Close]

BLAST of Spg024286.1 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.4e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 36  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 95
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 96  RACQNPSPVIDGRRANCNLASLGA 120
           RAC++P+P+IDGR+AN NLA LGA
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA 90

[Close]

BLAST of Spg024286.1 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 6.4e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 36  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 95
           DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 96  RACQNPSPVIDGRRANCNLASLGA 120
           RAC++P+P+IDGR+AN NLA LGA
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGA 113

[Close]

BLAST of Spg024286.1 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 1.2e-131
Identity = 259/351 (73.79%), Postives = 272/351 (77.49%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           QQRQFHNI++S++SS+    L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI
Sbjct: 3   QQRQFHNINSSNNSSS----LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPT
Sbjct: 63  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
           PQ                        HG+                              G
Sbjct: 123 PQ------------------------HGV------------------------------G 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRGASGIVTPP+YHVSSSSYIHQPT QYSFPLS YG+AGYSQDRIYPL        NY
Sbjct: 183 GRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPL--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPH+MQYPYLPQQHGS
Sbjct: 243 YGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGS 286

Query: 307 TGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG 358
           TGILSLPGS A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 303 TGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 286

[Close]

BLAST of Spg024286.1 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 4.4e-131
Identity = 258/351 (73.50%), Postives = 271/351 (77.21%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           QQRQFHNI++S++SS+    L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI
Sbjct: 3   QQRQFHNINSSNNSSS----LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPT
Sbjct: 63  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
           PQ                        HG+                              G
Sbjct: 123 PQ------------------------HGV------------------------------G 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRGASGIVTPP+YHVSSSSYIHQPT QYSFPLS YG+AGYSQDRIYPL        NY
Sbjct: 183 GRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPL--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFG+QYPH+MQYPYLPQQH S
Sbjct: 243 YGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSS 286

Query: 307 TGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG 358
           TGILSLPGS A GTT +G TATTI AVGSGPSQAS AVASE NSSELISTG
Sbjct: 303 TGILSLPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSSELISTG 286

[Close]

BLAST of Spg024286.1 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 4.0e-124
Identity = 251/351 (71.51%), Postives = 264/351 (75.21%), Query Frame = 0


Query: 7   QQRQFHNISNSSSSSTTTLGLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 66
           QQRQFHNI++S++SS+    L LG QY NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI
Sbjct: 3   QQRQFHNINSSNNSSS----LSLGGQY-NDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 62

Query: 67  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPT 126
           LEAVVITDKNTGRS        KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP PPT
Sbjct: 63  LEAVVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 122

Query: 127 PQQHGSFSILLPFISSMDHSIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG 186
           PQ                        HG+                              G
Sbjct: 123 PQ------------------------HGV------------------------------G 182

Query: 187 GRFRGASGIVTPPSYHVSSSSYIHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNY 246
           GRFRGASGIVTPP+YHVSSSSYIHQPT QYSFPLS YG+AGYSQDRIYPL        NY
Sbjct: 183 GRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPL--------NY 242

Query: 247 YGVYGGQQFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGS 306
           YGVYGGQQFSPYYSANG+SGPAGMFQNLYP+YAQSSQGYGFGIQYPH+MQYPYLPQQHGS
Sbjct: 243 YGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGS 278

Query: 307 TGILSLPGSTATGTTNAGATATTIIAVGSGPSQASSAVASEQNSSELISTG 358
           TGILSLPGS A GTT +G TAT+  AVGSGPSQASSAVASE NSSELISTG
Sbjct: 303 TGILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSSELISTG 278

[Close]

BLAST of Spg024286.1 vs. ExPASy TrEMBL
Match: A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 6.9e-116
Identity = 232/331 (70.09%), Postives = 245/331 (74.02%), Query Frame = 0


Query: 29  LGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 88
           +G QY NDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTF
Sbjct: 13  VGGQY-NDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTF 72

Query: 89  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGSFSILLPFISSMDHSIF 148
           KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP      QH                  
Sbjct: 73  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------QH------------------ 132

Query: 149 HMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGGGRFRGASGIVTPPSYHVSSSSY 208
                                              GGGGRFRG SGIVTPP+YHVSSSSY
Sbjct: 133 -----------------------------------GGGGRFRGPSGIVTPPAYHVSSSSY 192

Query: 209 IHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNYYGVYGGQQFSPYYSANGISGPA 268
           +HQPT QY FPLSAYGY+GYSQDRIYP+        NYYGVYGGQQFSPYYSAN I GPA
Sbjct: 193 VHQPTTQYPFPLSAYGYSGYSQDRIYPM--------NYYGVYGGQQFSPYYSANAIPGPA 252

Query: 269 GMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGSTGILSLPGSTATGTTNAGA--T 328
           GMFQNLYP+YAQSS GY FG+QYPH+MQYPYLPQQHGSTGILSLP STATGTT+AGA  T
Sbjct: 253 GMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAGAATT 275

Query: 329 ATTIIAVGSGPSQASSAVASEQNSSELISTG 358
            TT+   GSGP Q SSAVA+E NSSE+ISTG
Sbjct: 313 TTTMAVGGSGPLQTSSAVATEPNSSEVISTG 275

[Close]

BLAST of Spg024286.1 vs. ExPASy TrEMBL
Match: A0A6J1HB82 (RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 6.9e-116
Identity = 232/332 (69.88%), Postives = 245/332 (73.80%), Query Frame = 0


Query: 29  LGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 88
           +G QY NDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTF
Sbjct: 13  VGGQY-NDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEAVVITDKNTGRSKGYGFVTF 72

Query: 89  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGSFSILLPFISSMDHSIF 148
           KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP      QH                  
Sbjct: 73  KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------QH------------------ 132

Query: 149 HMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGGGRFRGASGIVTPPSYHVSSSSY 208
                                              GGGGRFRG SGIVTPP+YHVSSSSY
Sbjct: 133 -----------------------------------GGGGRFRGPSGIVTPPAYHVSSSSY 192

Query: 209 IHQPTGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNYYGVYGGQQFSPYYSANGISGPA 268
           +HQPT QY FPLSAYGY+GYSQDRIYP+        NYYGVYGGQQFSPYYSAN I GPA
Sbjct: 193 VHQPTTQYPFPLSAYGYSGYSQDRIYPM--------NYYGVYGGQQFSPYYSANAIPGPA 252

Query: 269 GMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGSTGILSLPGSTATGTTNAGATAT 328
           GMFQNLYP+YAQSS GY FG+QYPH+MQYPYLPQQHGSTGILSLP STATGTT+AGA AT
Sbjct: 253 GMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILSLPVSTATGTTSAGAAAT 276

Query: 329 TIIAV---GSGPSQASSAVASEQNSSELISTG 358
           T   +   GSGP Q SSAVA+E NSSE+ISTG
Sbjct: 313 TTTTMAVGGSGPLQTSSAVATEPNSSEVISTG 276

[Close]

BLAST of Spg024286.1 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.1 bits (562), Expect = 1.4e-57
Identity = 158/381 (41.47%), Postives = 198/381 (51.97%), Query Frame = 0


Query: 30  GPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 89
           G     DT  TKIFVGGLAWETQR TMRRYFEQFGEI+EAVVITDKNTGRSKGYGFVTFK
Sbjct: 12  GNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71

Query: 90  DPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGSFSILLPFISSMDHSIFH 149
           + +AA+RACQN +PVIDGRRANCNLA LGA KP PPT  +HG+                 
Sbjct: 72  EAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGT----------------- 131

Query: 150 MQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGG-----GRFRGASGIVTPPSYHVS 209
                                      +F   G G G      +FRG+S          S
Sbjct: 132 --------------------------GRFRSPGSGVGLVAPSPQFRGSS----------S 191

Query: 210 SSSYIHQP----TGQYSFPLSAYGYAGYSQDRIYPLVRMFECLSNYYG--VYGGQQFSPY 269
           SS+++HQ     T Q+ FP S YG++GYSQ+ +YP+        NYY   +YGGQQFSP 
Sbjct: 192 SSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPM--------NYYNHHLYGGQQFSP- 251

Query: 270 YSANGISGPAGMFQNLYPFY---------------AQSSQGYGFGIQY-----PHIMQYP 329
           Y  +  +G  GMF   YP+Y                Q+    GF  QY     P ++QYP
Sbjct: 252 YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPAPPLLQYP 311

Query: 330 YLPQQ-HGST-----------GILSLPGSTA-----------TGTTNAGATATTIIAVGS 357
           YLP Q H S+            ILSLP S A           + +T+A  TAT  + + +
Sbjct: 312 YLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSPSSSTSTSAATTATKTVVITT 329

[Close]

BLAST of Spg024286.1 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.5 bits (402), Expect = 5.1e-39
Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 28  GLGPQYNN----DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGY 87
           G G  Y N    DTTFTK+FVGGLAWETQ  T+R++FEQ+GEILEAVVI DKNTGRSKGY
Sbjct: 8   GSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGY 67

Query: 88  GFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPP---TPQQHGSFSILLPFI 144
           GFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +PP P    P   G      P+I
Sbjct: 68  GFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYI 127

[Close]

BLAST of Spg024286.1 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 158.7 bits (400), Expect = 8.8e-39
Identity = 100/262 (38.17%), Postives = 122/262 (46.56%), Query Frame = 0


Query: 36  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 95
           DTTFTK+FVGGLAWETQ  T+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTF+DP+AA 
Sbjct: 20  DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79

Query: 96  RACQNPSPVIDGRRANCNLASLGAHKPP---PPTPQQHGSFSILLPFISSMDHSIFHMQT 155
           RAC +P+P+IDGRRANCNLASLG  +PP      P   G      P++ S          
Sbjct: 80  RACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGS---------- 139

Query: 156 HGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGGGRFRGASGIVTPPSYHVSSSSYIHQP 215
                                                     + +P   H  S  Y   P
Sbjct: 140 ------------------------------------------VQSPRGLHFGSHPYHQPP 199

Query: 216 TGQY-SFPLSAYGYAGYSQDRIYPLVRMFECLSNYYGVYGGQQFSPYYSANGISGPAGMF 275
           T  Y    +  YG   Y  D +Y   +       +YG Y GQQ+   Y   G     G  
Sbjct: 200 TYNYQQGVVYPYGVTPYGPDYMYSQSQ------GFYGPYMGQQYLQVYGVPGAVNSPGYQ 223

Query: 276 QNLYPFYAQSSQGYGFGIQYPH 294
                     + GY  G  Y H
Sbjct: 260 YGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of Spg024286.1 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 158.7 bits (400), Expect = 8.8e-39
Identity = 100/262 (38.17%), Postives = 122/262 (46.56%), Query Frame = 0


Query: 36  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 95
           DTTFTK+FVGGLAWETQ  T+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTF+DP+AA 
Sbjct: 20  DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79

Query: 96  RACQNPSPVIDGRRANCNLASLGAHKPP---PPTPQQHGSFSILLPFISSMDHSIFHMQT 155
           RAC +P+P+IDGRRANCNLASLG  +PP      P   G      P++ S          
Sbjct: 80  RACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGS---------- 139

Query: 156 HGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGGGRFRGASGIVTPPSYHVSSSSYIHQP 215
                                                     + +P   H  S  Y   P
Sbjct: 140 ------------------------------------------VQSPRGLHFGSHPYHQPP 199

Query: 216 TGQY-SFPLSAYGYAGYSQDRIYPLVRMFECLSNYYGVYGGQQFSPYYSANGISGPAGMF 275
           T  Y    +  YG   Y  D +Y   +       +YG Y GQQ+   Y   G     G  
Sbjct: 200 TYNYQQGVVYPYGVTPYGPDYMYSQSQ------GFYGPYMGQQYLQVYGVPGAVNSPGYQ 223

Query: 276 QNLYPFYAQSSQGYGFGIQYPH 294
                     + GY  G  Y H
Sbjct: 260 YGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of Spg024286.1 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-37
Identity = 114/299 (38.13%), Postives = 141/299 (47.16%), Query Frame = 0


Query: 26  GLGLGPQYNNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGF 85
           G+GLG     DTT+TK+FVGGLAWET + TM+++FEQFGEILEAVVITDK +GRSKGYGF
Sbjct: 4   GIGLG-----DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGF 63

Query: 86  VTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPPPPTPQQHGSFSILLPFISSMDH 145
           VTF++ +AA  AC + +PVIDGRRANCNLASLG  +  P TP   G        I++M  
Sbjct: 64  VTFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGR-----INNMRV 123

Query: 146 SIFHMQTHGIFFINLHLFLFWRNMSNLNKIHKFAGGGGGGGGRFRGASGIVTPPSYHVSS 205
            +  MQT                                         G   PP      
Sbjct: 124 MMSTMQT-----------------------------------------GFGPPPP--PQP 183

Query: 206 SSYIHQPTGQYSFPLSAYGYAGYSQD-RIYP--LVRMFECLS-NYYGVYGGQ-------- 265
            ++ H P      PL+ +GY+ YS D   +P  L  M+ C S   YGVYG +        
Sbjct: 184 PTFTHYP----HLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGGGGLT 238

Query: 266 ----QFSPYYSANGISGPAGMFQNLYPFYAQSSQGYGFGIQYPHIMQYPYLPQQHGSTG 309
                 +P+Y   G  G    F    PFY   S         PH    P    Q G TG
Sbjct: 244 AAAASATPFYPCGGGHGGV-QFSQPQPFYHHLSS------YNPHHYSPPTFSMQQGVTG 238

The following BLAST results are available for this feature:

BLAST of Spg024286.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906691.1	4.9e-132	74.36	RNA-binding protein 24-B [Benincasa hispida]	[more]
XP_008460001.1	2.4e-131	73.79	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]
XP_004140591.1	9.2e-131	73.50	RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_00...	[more]
KAA0039913.1	8.3e-124	71.51	RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding prot...	[more]
KAG7025354.1	4.9e-116	67.80	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg024286.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.5e-27	61.86	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q76LC6	4.9e-26	55.00	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q5ZJX4	4.9e-26	66.67	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q9BX46	6.4e-26	66.67	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q9H0Z9	6.4e-26	66.67	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]

BLAST of Spg024286.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBZ0	1.2e-131	73.79	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A0A0K998	4.4e-131	73.50	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]
A0A5A7TA32	4.0e-124	71.51	RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1H998	6.9e-116	70.09	RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]
A0A6J1HB82	6.9e-116	69.88	RNA-binding protein 24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]

BLAST of Spg024286.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	1.4e-57	41.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	5.1e-39	64.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	8.8e-39	38.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	8.8e-39	38.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	1.3e-37	38.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..113 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..99 e-value: 6.6E-17 score: 61.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..117 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..130 e-value: 2.4E-27 score: 97.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 26..341
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 40..115 e-value: 4.48842E-45 score: 147.377
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 26..341
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..128

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg024286	Spg024286	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg024286.1-three_prime_utr	Spg024286.1-three_prime_utr-scaffold4:18984914..18985793	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg024286.1-cds	Spg024286.1-cds-scaffold4:18985794..18985897	CDS
Spg024286.1-cds	Spg024286.1-cds-scaffold4:18986040..18986277	CDS
Spg024286.1-cds	Spg024286.1-cds-scaffold4:18986364..18986424	CDS
Spg024286.1-cds	Spg024286.1-cds-scaffold4:18986520..18986935	CDS
Spg024286.1-cds	Spg024286.1-cds-scaffold4:18987032..18987286	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg024286.1-five_prime_utr	Spg024286.1-five_prime_utr-scaffold4:18987287..18987722	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg024286.1	Spg024286.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding