Spg023998.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg023998.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold13: 512925 .. 513598 (-)
Sequence length	261
RNA-Seq Expression	Spg023998.1
Synteny	Spg023998.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAGATTGGAGAAGAAGCGAAGAAGAAGAAGAAAGTAGAAACGAAGAAAAAGAAGAAAGAAGTTGAAGAAAGAAACGAAGAAGATGAAGAGGTAGAAGCGGCTAGGGTTGGATGTTGATGAGAAGTAAATAGAAAATTAGGGCTTCACTTAGAATTCTATAATTCTATTTATTAGGAGAGCAAATTAGGTTGGATTGGGTTTAATTAGGTTGGGCTAGCATTAATTCTATTTACTAGGAGTGAGAAAATTAGGTTGGACTGACATTAATTCTATTTACTATGAGAGAGAAAATGGAAGGTGAAAAGCCTTCATTAGAAATTAAAAATAAAAACTTATAGAATTATTTACCTATATATATATATATATATATATTTTAAATATTAATTAAAAATTTATGTATCTTGTTAACATTTACTATGGCACTATTCTGATATTGATTTTTTAAACTATGTTTACTATATAACTTTATGCACTATATATATAATTTTTATTTATTTATTAAGGTGCGCCTCGCTTCACTCGGGCGTCGCCTTTTTATCGCCTCTCGCCTTCGGGCGATCAAAGGACTCGTCGCCTCGAGGTGCGCCTTGCGCCTTGAAAACACTGATCTTGAATCATACATCCGCAAGGTTAACTTGCACTTCTTGATTGGCAACCAACTGGTTTAA

mRNA sequence

ATGAATAAGATTGGAGAAGAAGCGAAGAAGAAGAAGAAAGTAGAAACGAAGAAAAAGAAGAAAGAAGTTGAAGAAAGAAACGAAGAAGATGAAGAGGTGCGCCTCGCTTCACTCGGGCGTCGCCTTTTTATCGCCTCTCGCCTTCGGGCGATCAAAGGACTCGTCGCCTCGAGGTGCGCCTTGCGCCTTGAAAACACTGATCTTGAATCATACATCCGCAAGGTTAACTTGCACTTCTTGATTGGCAACCAACTGGTTTAA

Coding sequence (CDS)

ATGAATAAGATTGGAGAAGAAGCGAAGAAGAAGAAGAAAGTAGAAACGAAGAAAAAGAAGAAAGAAGTTGAAGAAAGAAACGAAGAAGATGAAGAGGTGCGCCTCGCTTCACTCGGGCGTCGCCTTTTTATCGCCTCTCGCCTTCGGGCGATCAAAGGACTCGTCGCCTCGAGGTGCGCCTTGCGCCTTGAAAACACTGATCTTGAATCATACATCCGCAAGGTTAACTTGCACTTCTTGATTGGCAACCAACTGGTTTAA

Protein sequence

MNKIGEEAKKKKKVETKKKKKEVEERNEEDEEVRLASLGRRLFIASRLRAIKGLVASRCALRLENTDLESYIRKVNLHFLIGNQLV

Homology

The following BLAST results are available for this feature:

BLAST of Spg023998.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg023998.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg023998.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg023998.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg023998	Spg023998	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg023998.1-cds	Spg023998.1-cds-scaffold13:512925..513089	CDS
Spg023998.1-cds	Spg023998.1-cds-scaffold13:513503..513598	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg023998.1	Spg023998.1-protein	polypeptide