Spg020749.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg020749.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Location	scaffold10: 26098308 .. 26100099 (+)
Sequence length	450
RNA-Seq Expression	Spg020749.1
Synteny	Spg020749.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGCGTCTCGACGCTGATGAGGCTCCAGGGGAAAAATGGTCATTTTACGCTCCGATTTCGCTTGTTTAAGCCTCGAATTGCTTCCAAAGCTCCGGTGAGGACCTATAGACATATTATACTCATTTTAAAGCATCTTTCGCAAGGAATTCAACTAAGATAAGCAAATTGGGAGATTCTAAGTGTATAACAAATTTCACCGATCAGACCTACAGATCAGAAGCTCCAACGATGTGAGATTAATTGGCTAAACTCATTAACCAAGTTAACCAATATTCGTTAACTGTGGTTCACTCCACTATAGACCCACAGCTGCACTCTTCTCACTGTAGAATATTTTTGTGTCCATGGATATCGACCAATGTAGTAAGTCAATCTTTCACGTGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCTTGGGTTACCTCTGGTTCCTTAAGTACCACTGATCCCTCTAATGAACAAGTCGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCGAGCCAGGAGAGAACGATGCGCCTTTGTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAATGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCAGTCTTGCCCCTGAAATGGTAGGATTATTGAGTTGGCGAATTGGCCACCCTCACCCATACAAATCTAAGGACAATCCCTCCTGAAAAGGGGTTCATAACAGACTCAGGATTGAGATTGGGTTACCTAGGTCATCCTATTGAAATAGAAACCTAAACTAGTCAACAACGTTACATCTAGTGGTTACTATTTCACGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATATGTATCGAATACAAGGTGGGTCGTATCATATAGTGTCACCATGATAAGGTACCCAGCCTTATCGCTATACTATAGACCATTTAAGTTATTACTTGGACACTGATCCCCGTATGTCTCTACATACCAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATCACTCAAATAACGCTTTATTGAGATCGTTTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACATTATATGGTTTTTCTTCTAAGAAAACTAGGTTTTTCTTCTAAGAAAACTACAAGTTTTTCCATTGCTTGTCATTTTAACTACTAGTAATGGAAGGGAAGTGAATATCTGTACTATCTATAGAAATTGATGACTTTCCTTTGACCATTTAGGTTGCTGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACAGGATTGCTCAGGTAAAAAGTTTAACTGGGAGCAAGATCTTGTGTATATTGAAGGCTCATGGTGAGCCTCATCTACCCTTCCACCACTGAACTTCTATTTTATACATCAGTCAGAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTCAAGGCTAGCTCTTGAAATCCCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCCTGACCCAGTATTACAAGAAGGCAAAGAAGCTTCCCCCTATTTGGAAGCAGTAA

mRNA sequence

ATGATGAGCGTCTCGACGCTGATGAGGCTCCAGGGGAAAAATGGTCATTTTACGCTCCGATTTCGCTTGTTTAAGCCTCGAATTGCTTCCAAAGCTCCGCCCCCATTCAGTCTTGCCCCTGAAATGGTTGCTGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACAGGATTGCTCAGGTAAAAAGTTTAACTGGGAGCAAGATCTTGTGTATATTGAAGGCTCATGCTCTTGAAATCCCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCCTGACCCAGTATTACAAGAAGGCAAAGAAGCTTCCCCCTATTTGGAAGCAGTAA

Coding sequence (CDS)

ATGATGAGCGTCTCGACGCTGATGAGGCTCCAGGGGAAAAATGGTCATTTTACGCTCCGATTTCGCTTGTTTAAGCCTCGAATTGCTTCCAAAGCTCCGCCCCCATTCAGTCTTGCCCCTGAAATGGTTGCTGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACAGGATTGCTCAGGTAAAAAGTTTAACTGGGAGCAAGATCTTGTGTATATTGAAGGCTCATGCTCTTGAAATCCCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCCTGACCCAGTATTACAAGAAGGCAAAGAAGCTTCCCCCTATTTGGAAGCAGTAA

Protein sequence

MMSVSTLMRLQGKNGHFTLRFRLFKPRIASKAPPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHALEIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWKQ

Homology

[Close]

BLAST of Spg020749.1 vs. NCBI nr
Match: XP_023921946.1 (40S ribosomal protein S13 isoform X1 [Quercus suber] >XP_023921947.1 40S ribosomal protein S13 isoform X2 [Quercus suber] >XP_030935934.1 40S ribosomal protein S13 [Quercus lobata] >KAF3964123.1 hypothetical protein CMV_011555 [Castanea mollissima])

HSP 1 Score: 184.1 bits (466), Expect = 8.7e-43
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH
Sbjct: 19  KRTPPSWLKISPQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRVLKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH
Sbjct: 19  KRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH
Sbjct: 19  KRTPPSWLKISAQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. NCBI nr
Match: XP_021687108.1 (40S ribosomal protein S13-like [Hevea brasiliensis])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH
Sbjct: 19  KRTPPSWLKISPQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. NCBI nr
Match: XP_021687881.1 (40S ribosomal protein S13-like [Hevea brasiliensis])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH
Sbjct: 19  KRTPPSWLKISPQDVQENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 95/122 (77.87%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++ + V ENICKFAKKGLT SQIGVILRDSH IAQV S+TGSKIL ILKAH
Sbjct: 19  KRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-43
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 32  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL- 91
           +P      P+ V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L 
Sbjct: 22  SPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLA 81

Query: 92  -EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWK 149
            EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+WK
Sbjct: 82  PEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Spg020749.1 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-43
Identity = 93/119 (78.15%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 32  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL- 91
           AP    ++ + V E ICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L 
Sbjct: 22  APSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81

Query: 92  -EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWK 149
            EIPEDLYHLIKK VSIRKHLER +KDKDSKFRLILVES+IHRL +YYKK KKLPP+WK
Sbjct: 82  PEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Spg020749.1 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.1e-43
Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 43  VAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLI 102
           V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L  EIPEDLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 103 KKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWK 149
           KK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+WK
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Spg020749.1 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-36
Identity = 86/125 (68.80%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 28  IASKAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCIL 87
           I  K  PP     A   V E I K AKKG   SQIGV+LRD H I  VKS+TGSKIL IL
Sbjct: 16  IPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRIL 75

Query: 88  KAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKL 147
           KAH L  EIPEDLY LIKK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYK+ KKL
Sbjct: 76  KAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKL 135

Query: 148 PPIWK 149
           PP WK
Sbjct: 136 PPTWK 140

[Close]

BLAST of Spg020749.1 vs. ExPASy TrEMBL
Match: A0A7N2MIC4 (Ribosomal_S13_N domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.2e-43
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH
Sbjct: 19  KRTPPSWLKISPQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRVLKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. ExPASy TrEMBL
Match: A0A2N9HS23 (Ribosomal_S13_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42657 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.5e-43
Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 32  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL- 91
           +P    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH L 
Sbjct: 22  SPSWLKISPQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRVLKAHGLA 81

Query: 92  -EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWK 149
            EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+WK
Sbjct: 82  PEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Spg020749.1 vs. ExPASy TrEMBL
Match: A0A2N9IT03 (Ribosomal_S13_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55212 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.5e-43
Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 32  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL- 91
           +P    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH L 
Sbjct: 22  SPSWLKISPQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRVLKAHGLA 81

Query: 92  -EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWK 149
            EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+WK
Sbjct: 82  PEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Spg020749.1 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.2e-43
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH
Sbjct: 19  KRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.2e-43
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 31  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAH 90
           K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH
Sbjct: 19  KRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78

Query: 91  AL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPI 149
            L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+
Sbjct: 79  GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138

[Close]

BLAST of Spg020749.1 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-44
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 32  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL- 91
           +P      P+ V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L 
Sbjct: 22  SPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLA 81

Query: 92  -EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWK 149
            EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+WK
Sbjct: 82  PEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of Spg020749.1 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 174.5 bits (441), Expect = 6.5e-44
Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 43  VAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLI 102
           V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L  EIPEDLYHLI
Sbjct: 33  VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92

Query: 103 KKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWK 149
           KK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK KKLPP+WK
Sbjct: 93  KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 140

The following BLAST results are available for this feature:

BLAST of Spg020749.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023921946.1	8.7e-43	78.69	40S ribosomal protein S13 isoform X1 [Quercus suber] >XP_023921947.1 40S ribosom...	[more]
XP_022143980.1	1.5e-42	79.51	40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom...	[more]
XP_038906798.1	1.5e-42	79.51	40S ribosomal protein S13 [Benincasa hispida]	[more]
XP_021687108.1	1.5e-42	78.69	40S ribosomal protein S13-like [Hevea brasiliensis]	[more]
XP_021687881.1	1.5e-42	78.69	40S ribosomal protein S13-like [Hevea brasiliensis]	[more]

BLAST of Spg020749.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	2.8e-44	77.87	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59223	1.4e-43	77.31	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P46298	3.1e-43	78.15	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59224	9.1e-43	83.33	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
Q69UI2	4.8e-36	68.80	40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of Spg020749.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2MIC4	4.2e-43	78.69	Ribosomal_S13_N domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2N9HS23	5.5e-43	78.99	Ribosomal_S13_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOC...	[more]
A0A2N9IT03	5.5e-43	78.99	Ribosomal_S13_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOC...	[more]
A0A6J1KV63	7.2e-43	79.51	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ...	[more]
A0A6J1HJL3	7.2e-43	79.51	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=...	[more]

BLAST of Spg020749.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	1.0e-44	77.31	Ribosomal protein S13/S15	[more]
AT4G00100.1	6.5e-44	83.33	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 80..149 e-value: 8.6E-6 score: 24.5
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 91..142 e-value: 6.6E-13 score: 48.7
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 106..136
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 80..148 e-value: 1.11746E-19 score: 75.6174
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 22..70 e-value: 4.3E-5 score: 31.8
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 30..70 e-value: 9.2E-12 score: 44.8
None	No IPR available	GENE3D	1.10.287.10		coord: 92..149 e-value: 6.0E-30 score: 105.4
None	No IPR available	GENE3D	4.10.860.130		coord: 45..91 e-value: 5.7E-22 score: 79.2
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 37..148
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 37..148
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 76..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg020749	Spg020749	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg020749.1-cds	Spg020749.1-cds-scaffold10:26098308..26098406	CDS
Spg020749.1-cds	Spg020749.1-cds-scaffold10:26098942..26098968	CDS
Spg020749.1-cds	Spg020749.1-cds-scaffold10:26099672..26099810	CDS
Spg020749.1-cds	Spg020749.1-cds-scaffold10:26099915..26100099	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg020749.1	Spg020749.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding