Spg014003.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg014003.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Location	scaffold3: 45962458 .. 45964679 (-)
Sequence length	363
RNA-Seq Expression	Spg014003.1
Synteny	Spg014003.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAGAAGGCGAACCTATTCAAAGGGCAACAGAAGAGGAAAACCATCCCTCCCAATCGCCATGGAAAAGTCCCCCAAACTCGTAAAGGTTTCTTTTTCTTTTTCTTTCACATTCTGCATTTACGCGTAAAAATTACGATTTCTCCTCCTCCGTATTCATTCGGCGTCGTCTTTGCAGGGAAAAGATTTGTAAAGCCATCAAAGATCACTAAAGAGATGGAAACAGATCGGGTATGTTTCTCTTTTCGTGCTTATCCGGTAATTGATGTAGACTCTAGTAACCGTCAGAGTAGAAACTTATGTCGATAAGTTGTTTTTGATGCGGTAGTTCGTATTTTCGATATTTAGCTCATTCTGTGGTAGTTTTGGGTGTATTGGATTAAGATGCAACCGAACGTAAGGTATCTAAATAGTTAAGGCCGTGTGTATGATATATGTTGTTGAAGATCCCACATTGGAAAGATAAGTGGAGACCTCCCAATTTATAAGATACAAAGGCTACTACTCTCATTGCCAATTGGTTTTGAGATGAAACCCATGTAATGTAATATATGTCGCATTGTCTTGCTGTTTTGCAATTCAGGTTAACTATTAAGTATTAATCATTCATTATTTTGGTTAGCTGAGAACAGTTCTGAATTTTCTCTGCCATTTCTTTGCCGGGAATGGATTTTTTGTATGGTTTTTAAGTCATCTTCTTTTGGCTGAATTTAGTGGTTTTTTAAGTTAATTTCAAATTCCACTGTGACATCGCTGAATTTGGTAGTTTCTTAGTTAATTTGGTAGTTCCTCCTTTTTTAGGAATGGTCTCTTGCGCAAAGATAGGATCTCAATTTCTCTCAACTGAAAGAAAGTTAAGAAACATTGTGCAAGGCCAAAGAAAGGAGTATTTTTATTGATTTCTAAATTATAAGATATTTGGTTGGTTGACTGAGATTTTGTACAGTAGAAATGCTTTTGGCTTTTGAAAGGAGAGGAGATAAGTAGTCTTGATTTGAAGGGAATCAAATCGTTTTTGTTTATGCACTTGGAGTTTCCTTAGCATGAATTAGTTTTTTCCTTGGCTAGTTTTTTTTTCACATTCCTCTGTAAAGGTCGACTATGGATGAATAGGAATTACGTTAGGTTCTCAAGAAAGTTTGTGCCCTTTTGTATCAATAATAGTAGGCTTTCTACTTCTTCTAGAGTAAATATGTATTTGTGCAATCCTGAGTGTGAGACACATGGGACTTTAGCCTAAGTGTCAAACCTATATTTCCCAATCTATTGGTGACCATAAGCATGCCAAACATGGTTGTCATGTTTGTGCTCGTCTCTAGTTTGTCTTGTATCTTTCAAGAGGAAGAGTAAATTTCCTTGGACTAATATTATTTTTCCTAGTATGTGATAGCAGTTAATACTTCATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGGGGGGGGGAAGAAAGAACTATCTTCTACAACTCCTTGGTTTGCCATCCCCCTCTTCAAACTAGTCATATTAATGGAAGGTTTTATTTCTTATCATAAAAAGTTATTTTTGTGTTTTAAAGTGGAATATTGTATAAAATGGCTAAATTGTTCCTGTATTTAGCATAATGCTATATTGTTTAACTATATTCTTCCTTGAGATGCTTTTTGTTGGAAATGAATAGAATGTATAGGACACATTATGCATGCCGTTTCATAGATAATAGAGTCACAATGTTTACATTACTTTTGCCGTTTCTTGTTGAGAATGTACATGGTTTATGAACTTTTTCTCCATGACTGATAATCTTGATATCCTGAAAAAAAAAAAAAAAACCAGGAACTGAGCAAGTTCATAAACTACTGCAATGAGACCAAGGCTGCTACTTTAGCTAACAAGGAAGGTGGCCAACTGAGTATTGTCAAAACCCCATCAGATGCTGGTAATAGCAGTGCAAAGAAAGATTAGAGGATTCAGACCCATGACAATAGTGTGAAATTATTTGTGATATCGTTTCTTCTTTTTTTCTTTTTCTTTTTTTAATTTTATTTATCCACCCTGTTGAGAAGTTGAAAAAGGGTGTGTCAGGTTGTGTTCGTCTTCTAACGCAATTCTCAATTTTGTCAGAAGTAATATTACTACTACATATATGTATTTTGGTTTTTACTTTTGTAAGAATGGTTATGGGAGATCTCACGATGGAATGGAGTTGCAAATTTTGGTAGTAATGTCAA

mRNA sequence

ATGACTCAGAAGGCGAACCTATTCAAAGGGCAACAGAAGAGGAAAACCATCCCTCCCAATCGCCATGGAAAAGTCCCCCAAACTCGTAAAGGTTTCTTTTTCTTTTTCTTTCACATTCTGCATTTACGCGTAAAAATTACGATTTCTCCTCCTCCGTATTCATTCGGCGTCGTCTTTGCAGGGAAAAGATTTGTAAAGCCATCAAAGATCACTAAAGAGATGGAAACAGATCGGGAACTGAGCAAGTTCATAAACTACTGCAATGAGACCAAGGCTGCTACTTTAGCTAACAAGGAAGGTGGCCAACTGAGTATTGTCAAAACCCCATCAGATGCTGGTAATAGCAGTGCAAAGAAAGATTAG

Coding sequence (CDS)

ATGACTCAGAAGGCGAACCTATTCAAAGGGCAACAGAAGAGGAAAACCATCCCTCCCAATCGCCATGGAAAAGTCCCCCAAACTCGTAAAGGTTTCTTTTTCTTTTTCTTTCACATTCTGCATTTACGCGTAAAAATTACGATTTCTCCTCCTCCGTATTCATTCGGCGTCGTCTTTGCAGGGAAAAGATTTGTAAAGCCATCAAAGATCACTAAAGAGATGGAAACAGATCGGGAACTGAGCAAGTTCATAAACTACTGCAATGAGACCAAGGCTGCTACTTTAGCTAACAAGGAAGGTGGCCAACTGAGTATTGTCAAAACCCCATCAGATGCTGGTAATAGCAGTGCAAAGAAAGATTAG

Protein sequence

MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFAGKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD

Homology

[Close]

BLAST of Spg014003.1 vs. NCBI nr
Match: XP_038897231.1 (uncharacterized protein LOC120085359 [Benincasa hispida])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 84/120 (70.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKANLFKGQQKRKTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKANLFKGQQKRKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSK TKEMETDRE+SKFINYCNETKAATLANKEGGQLSIVKTPSD GNS+AKK+
Sbjct: 61  GKRFVKPSKTTKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPSDTGNSNAKKE 90

[Close]

BLAST of Spg014003.1 vs. NCBI nr
Match: XP_022145051.1 (uncharacterized protein LOC111014568 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34
Identity = 86/120 (71.67%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKAN FKGQQKRKTIPPNRHGKVPQTRK                              
Sbjct: 1   MTQKANQFKGQQKRKTIPPNRHGKVPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVK P DAGNSSAKK+
Sbjct: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKAPLDAGNSSAKKE 90

[Close]

BLAST of Spg014003.1 vs. NCBI nr
Match: XP_008461352.1 (PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 uncharacterized protein E6C27_scaffold339G00540 [Cucumis melo var. makuwa] >TYK10387.1 uncharacterized protein E5676_scaffold459G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 6.6e-33
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKANLFKG+QKRKTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKANLFKGKQKRKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSK TKEMETDRE+SKFINYCNETKAATLANKEGGQLSIVKTP++A NS+AKK+
Sbjct: 61  GKRFVKPSKTTKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Spg014003.1 vs. NCBI nr
Match: XP_004135948.1 (uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hypothetical protein Csa_016027 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 80/120 (66.67%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKANLFKG+QK KTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKANLFKGKQKTKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSK TKEMETDRE+SKFINYCNETKAATLANKEGGQLSIVKTP++A NS+AKK+
Sbjct: 61  GKRFVKPSKTTKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Spg014003.1 vs. NCBI nr
Match: KAG6575705.1 (hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 9.5e-32
Identity = 83/122 (68.03%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKA LFKGQQKRKTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKATLFKGQQKRKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAG---NSSA 120
           GKR VKPSK TKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAG   N++A
Sbjct: 61  GKRVVKPSKTTKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGGNSNNAA 92

[Close]

BLAST of Spg014003.1 vs. ExPASy TrEMBL
Match: A0A6J1CV79 (uncharacterized protein LOC111014568 OS=Momordica charantia OX=3673 GN=LOC111014568 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.6e-35
Identity = 86/120 (71.67%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKAN FKGQQKRKTIPPNRHGKVPQTRK                              
Sbjct: 1   MTQKANQFKGQQKRKTIPPNRHGKVPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVK P DAGNSSAKK+
Sbjct: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKAPLDAGNSSAKKE 90

[Close]

BLAST of Spg014003.1 vs. ExPASy TrEMBL
Match: A0A5A7UV30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00290 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-33
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKANLFKG+QKRKTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKANLFKGKQKRKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSK TKEMETDRE+SKFINYCNETKAATLANKEGGQLSIVKTP++A NS+AKK+
Sbjct: 61  GKRFVKPSKTTKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Spg014003.1 vs. ExPASy TrEMBL
Match: A0A1S3CE62 (uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-33
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKANLFKG+QKRKTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKANLFKGKQKRKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSK TKEMETDRE+SKFINYCNETKAATLANKEGGQLSIVKTP++A NS+AKK+
Sbjct: 61  GKRFVKPSKTTKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Spg014003.1 vs. ExPASy TrEMBL
Match: A0A0A0K6H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420860 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 80/120 (66.67%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKANLFKG+QK KTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKANLFKGKQKTKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAGNSSAKKD 120
           GKRFVKPSK TKEMETDRE+SKFINYCNETKAATLANKEGGQLSIVKTP++A NS+AKK+
Sbjct: 61  GKRFVKPSKTTKEMETDREVSKFINYCNETKAATLANKEGGQLSIVKTPANADNSNAKKE 90

[Close]

BLAST of Spg014003.1 vs. ExPASy TrEMBL
Match: A0A6J1JNC0 (uncharacterized protein LOC111488438 OS=Cucurbita maxima OX=3661 GN=LOC111488438 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 82/122 (67.21%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQKA LFKGQQKRKTIPPNRHGK+PQTRK                              
Sbjct: 1   MTQKATLFKGQQKRKTIPPNRHGKIPQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDA---GNSSA 120
           GKR VKPSK TKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDA    N++A
Sbjct: 61  GKRVVKPSKTTKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAAGNSNNAA 92

[Close]

BLAST of Spg014003.1 vs. TAIR 10
Match: AT3G52040.1 (unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-23
Identity = 63/120 (52.50%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 1   MTQKANLFKGQQKRKTIPPNRHGKVPQTRKGFFFFFFHILHLRVKITISPPPYSFGVVFA 60
           MTQK+N FKGQQKRKTI PNRHGK  QTRK                              
Sbjct: 1   MTQKSNQFKGQQKRKTIAPNRHGKSIQTRK------------------------------ 60

Query: 61  GKRFVKPSKITKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPS--DAGNSSAK 119
           GKR VKP+K+TKEM+TDREL+KFIN+CNE KA   A KEGGQL+I+K  S  +    SAK
Sbjct: 61  GKRNVKPTKMTKEMDTDRELTKFINHCNEVKATNAACKEGGQLNIIKAESQPEPSKKSAK 90

The following BLAST results are available for this feature:

BLAST of Spg014003.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897231.1	1.2e-34	70.00	uncharacterized protein LOC120085359 [Benincasa hispida]	[more]
XP_022145051.1	1.6e-34	71.67	uncharacterized protein LOC111014568 [Momordica charantia]	[more]
XP_008461352.1	6.6e-33	67.50	PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo] >KAA0058587.1 unc...	[more]
XP_004135948.1	3.3e-32	66.67	uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hypothetical ...	[more]
KAG6575705.1	9.5e-32	68.03	hypothetical protein SDJN03_26344, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg014003.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg014003.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV79	7.6e-35	71.67	uncharacterized protein LOC111014568 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A5A7UV30	3.2e-33	67.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CE62	3.2e-33	67.50	uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=...	[more]
A0A0A0K6H9	1.6e-32	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420860 PE=4 SV=1	[more]
A0A6J1JNC0	2.3e-31	67.21	uncharacterized protein LOC111488438 OS=Cucurbita maxima OX=3661 GN=LOC111488438...	[more]

BLAST of Spg014003.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52040.1	2.3e-23	52.50	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR36769	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 61..118
None	No IPR available	PANTHER	PTHR36769:SF1	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 61..118
None	No IPR available	PANTHER	PTHR36769:SF1	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 1..31
None	No IPR available	PANTHER	PTHR36769	2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE	coord: 1..31

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg014003	Spg014003	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg014003.1-three_prime_utr	Spg014003.1-three_prime_utr-scaffold3:45962458..45962723	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg014003.1-cds	Spg014003.1-cds-scaffold3:45962724..45962852	CDS
Spg014003.1-cds	Spg014003.1-cds-scaffold3:45964446..45964679	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg014003.1	Spg014003.1-protein	polypeptide