Spg013908.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg013908.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold3: 31420799 .. 31426285 (+)
Sequence length	570
RNA-Seq Expression	Spg013908.1
Synteny	Spg013908.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGGAGGCAAGAGAGAATGCAAGAGTGCATTCTTGTGATCTTATGTTGTAGTACCTAAACCCTAGGTTTAGTGTTCTATTTATAAGAGAAAGACCATGAATAAAATATTCATTTAAAATCAATTATTTCCATAACTGATTTAATCTTTTCCATAATTAATCAATTCCATAACCAATCAATTCCATAATTGATTAATCTTTTCCATAAGGGGCCGTTTGGGCCCCCGAATAGAATAAAATAACCCATGTTATTTTACTTTTTCCCTCGTTTGGCCCGCTCATTAATTTACACTGCTGGAATTGATTTTCTTGAGCGCCGGTTATGTTAATTGCTGTCGTCTGATTTCTTACGCAAACCCTCTCTCTCTCTCGAATCTGTGCTTCTCTCACCCTTTTGGATCTAGGGTTTCTGCAGCCCCTTCGTCTTCTCCGTCACCCTCTTCTTCCTCAAGCGTATCTCTTTGTCTCCCTTCTCTATCCGTTTCCAGATCGGTGTTTTTCACCAGATCTGAAATGAGTTTTCACGATTCCCTCGCCGCTCTGAATAGGGTTCCCCCTCTTGCCGCTTTCCTTCGACTCTTCGATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGGTAGGGGGTGGTCGGAGTCCTTTCGAGCCTGGTGGGGGAGGTGTTTGAAGGTTTGTTCTCTATCCTTGGCCGGCCGATGATGAATGCCTCTGTGCTCTCTCTCTTATCTGTTTTTTTCCTTCTATTGTCGCTTTATTTGGTATCTGTTTTTATATATATTTTCGAATGTTTACGTTTCTTGTTTTTTCTTTGCATAATTGTTGTCTGATTCGAATGTTTCTTGTTCATTTTTTTATTTTTCTTGTTTATTTGTAGTCGACGATGAGTTTTTTTTTTGCCCCTTTTGCATATTGGTTCTCTGATTACACTAGGAGACCTTTTCCTTTTTTTTTTTTTTTTGTCGTCGATGCTGAGTATTTTTCTTCTTTCTTTTTTGCATAATGGTTCTTTGATTCACGAGTCAGTGATGGGTTTTATTTTCCTTTTTGTTTTTTTTTTGCATAGTTGTTCTCTGATCCGAAGTTTTCCATATCCTTCCTTTTTTTTTTTTCCAGTCGATGATTGAGTATTTTTCTTCTTTTTGTTTGTGGCATAATAATTATTTCATTCACGAGTCATAAGTTTAGATCTCTGTGTTGTTTGAATGTTCACCATGATTCTGTGTTGTCTGTCATGTTTTGCATACTCCTTATTTGATTTATGTATGTCCTCCGATTTATTGCCATATTTGAAATCTCTGTTTCTATTTTTTTGCATAATTGTACTCTGAGATCTCTGTGTTCTTTGCGTATGTTTACCATAATTTTGTGATGCTTGTCCTGTTTTTGCATAATCATTGTCTGCCTACGTATATTCTCTGATTCATGGCCATATCTGAGATCTTTGTTTTTGTTTTCCAACATTGTACATGAAATTCAATGTTCATGAATGAATTTCAAAGACCTGAGGCCGGCCAAATTTCAACTGTTTAATTATAAATGCATTGGTCTGTTGACATCTGCTTTGTAATAAATGTTCTTCTGCATACACTGTTGAGTTGACATTTGCTTTAAAAAAAATGATGATTGCTCTTCATAAATGCTGAAATTGTCAATGGGATTTGACATTATTCAATATCCCTTCTTCTACCATTGGAATGTTGGTTGGGTGCAATAAGTGCACCAACCAACATTGAAGACTACTCTTCACTTTCATTCTTTATATACATGTATAATTTTTACGTTGGTTCTGCAGGCAGCCCCATCTTGTTCTTCTCTTCCTCTACATACAATTAGGTTAATCTCTTCTCTCTCTCTCCCTTCTTCTTAACTACTTCTTTGTACGTGGTCTTTGACATAATACTAATGCACTTCTCTCTTGCAACAAGGGCGGACTCCTTCCCCAAGGAAACTAGTTCTTGCCTCATACTTTGCTTCCCCATCTCCTCCTAGTAAGGTTAGTGTCCTTGTTCTGTATGTACTAAAAATTTGATAATTAGGTTCTAATCTTCATCGTTTTTTGTTTTCAGGATTTGGAAAACATACTTTGATCGACCTTACTTCGAGGTTCGTTTTTTTCTTAAAGATCAAATGATCCTTGTGTAATTTATTTATGTTGCACATTTTCTTTGTTCATGTATATGGATTGAACCTTGTTTTTTTTTATTATGGTTGTATTTATTTCATAGACTCTTTCATTCATAATCTATGTGGGGCATTGTATATTAAACATTTTGAACATGCGTGAAACTTGAAAGTATTATATTTTGGTTGTGCTTTTTACATATGTTTGGTGGTCAGAATTTTTTATTCTAAAGGTTGCTTCAAAAATCTTTTTTTTTTTTTGATATTGGTTCAAAGTTTGCTAAATTTTAACACAAATTTTATAACTTTAACAAATAACACCAATTTTAATATATGTTTGCTTATTCTAAATTTTAACACAATCTTTAACACAAATTTTAAATTTTTGTAAGGATCGTTTTAATTATTCCGTGAAAGCATGGAATTAGTCATTACCGAATGAGATTTAGGAGTTATAGCTAAATATAAAATAAAACAAAAGAGTTTGGTTTATAAATAACAATTTAGAAAAGAAATAGATATTAGAAAAGAAATAAAATCTGTTTTAGAAAAGAAATAGAGATTAATGAAGAAATATTTACGTGGCACATACTTTTGAAAAAACAATATTTCAATTAACATATTTTTTTTCAGAAAAACAGACTTTAGTAAACAAGTTGCACTAAAAAAAAGTTATTTTCGTAATGTGACAAGTTTTCCTTGCGTAGTTTTATCAAAGTTATCTTGCAAAATAACGCTTTTGAAATCAATTACCCAGTTGAACTCCAAAAGGAAAAAAGGTTTTTCGAAATGCACATTATTAAAAATAGTCAGTTGGACAAGTTTTTTATATATTTTCAAAACAAGAATGTAAATCCAATTTGGTAGGGAATTTTTTTTTGTTCAACATGAAAAGTTATATTTTATTCTTCAAAAATGTTTCGTTATAATAAAGAAGATCTATAATAATTCGAACGAGTTTTTCAGATTATTACTCAAGGGACGAGAGAGAATTAATGAGTTATTTTATTTTAACAAAGATTATACGGATTTTTAAACACAATATTTAACACAAATTAACATAATGATTTTAACACAATCTTGAACACAATAAAAATTTGGAAAAACAAGGTTTCCAATCATACTGATTTTTCCCAATTTGTTTTAACAAATGTCATACTTTCCTGTTCAACCCTTAAATAGAACTATTTTTTAAAATCCTAAATCGAAAGAGTGTATTTTCGTTTTTAATCTTCTTTAATAAATCCATAAACAATTTGTTTATGCAATTTCAACCTTTCTTTAAGCAATTACAATCAAAATTTGAACACTTACCCTAACGCTCTTTTTGAACGTATCTTTATGTTTTTTCTATATATTTTTTTATATGAAACCTCGGACCCCAAAGTTATGTTGTTTTCCTTTTTAACAAATCCTTTTCAACTTTTAATAACAAATCCATGATCGTAAGTTCCTTTTGGCCTCCTGATTTATTTATTACTTTTTTCCATTTTTCCTGTTTGAGTTAAACGATACCTTCGTCCATGATGACCTTTTTTTTCCCTTTGTCTCCTAGTGTAATTATGGATCCCGATGAACTAGATCCCCATGAACTAGTGGCCATATTGGCAGCCTTCACCACAGCTCAAACTCAAATTCTCCTACTATTAGATCTATATATGAACAATCGTAGGAGAATAGAACACGAATCACCCTACATCCGACACCACATTAGGCAACTAGCATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGAGTACAAGGATGGACAGAAGATGTTTTGCCATACTGTGCACCTTATTAAGAACAGTTGCTGGCTTATCCGGTACGGATGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCATAGCCCACGACGTTAAGAACCGAGTAGTTCGTACGCAGTTTGCTAGGTCTGGAGAGACAGTTTCTAGGCATTTCAACACCGTCCTTCATGGGGTGTTACGACTGCATGAAGTTCTCTTGAAAAAACCTGAGCCAGTCACGACCTCTTGTACGGATCCTAGGTGGAAATGGTTTCAGGTATAGATCATAATTCATCCAACTTTATCTAAGTCTAGACTCACTTCTAGGGTTAGAAACGTGAACCAATATTGCCTCTACTATGTCGACGCAGAATTGCCTTGGTGCGTTAGATGGAACATACATCGAGGTCAATGTTAGTGTCCTCGATCGTCCGAGGTATAGAACAAGGAAAGGTGAAATTGCCACGAACGTGCTTGCTGTCTGTGATACAAACGGAGATTTCACATTCGTCCTACCAGGGTGGGAAGGGTCTGCCGCTGATTCTCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGTAAATAATCAGATATTTTTTTTCCTTTCACCATACAACCCTTAGGAAGATGTACTGAGCCGCTATAACATTCCACAGGATATTATTATCTGTGCGATGTTGGGTACCCTAATGCAGAGGGTTTCCTAGCACCGTATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTAGTCCGAAGGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCGAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGCTTACTTCACAATCTTATCAACAGGGAGATGGGTGATCGTGAAATTCCCGATGAATTGGATGAGGTGGATTCTGCATCAGCTAGAACTGATGGTGAGAATATTAATTTCATTGAGACTTCAGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGAATGGGAGTTACGTCATAGCTAATGGATTAACATTGCTTTGTAGATTTTATGAATTGCTTCTTCTAGTTCTAGTATTCAGAATCGCTAGTTGTATTGACTGTTTACATTCCAATCGTTAATGTAATTGTTTATCTTGGTTAATGCAATTTTCATTCATGAATCTATGTACATGATTTTTATTACGTTATAGTTTAACATTTCCACAATGTATGTATTCACATAGCAGAATGACCAGTTCCTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAATAA

mRNA sequence

ATGAGAGGGAGGCAAGAGAGAATGCAAGAGGTTTCTGCAGCCCCTTCGTCTTCTCCGTCACCCTCTTCTTCCTCAAGCGTATCTCTTTGTCTCCCTTCTCTATCCGTTTCCAGATCGGTGTTTTTCACCAGATCTGAAATGAGTTTTCACGATTCCCTCGCCGCTCTGAATAGGGTTCCCCCTCTTGCCGCTTTCCTTCGACTCTTCGATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGGATTTGGAAAACATACTTTGATCGACCTTACTTCGAGACTTCAGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAGATAATGACCAGTTCCTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAATAA

Coding sequence (CDS)

ATGAGAGGGAGGCAAGAGAGAATGCAAGAGGTTTCTGCAGCCCCTTCGTCTTCTCCGTCACCCTCTTCTTCCTCAAGCGTATCTCTTTGTCTCCCTTCTCTATCCGTTTCCAGATCGGTGTTTTTCACCAGATCTGAAATGAGTTTTCACGATTCCCTCGCCGCTCTGAATAGGGTTCCCCCTCTTGCCGCTTTCCTTCGACTCTTCGATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGGATTTGGAAAACATACTTTGATCGACCTTACTTCGAGACTTCAGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAGATAATGACCAGTTCCTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAATAA

Protein sequence

MRGRQERMQEVSAAPSSSPSPSSSSSVSLCLPSLSVSRSVFFTRSEMSFHDSLAALNRVPPLAAFLRLFDVACWIRWVRTSGNAWIWKTYFDRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

Homology

[Close]

BLAST of Spg013908.1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-24
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNG 151
           D  Y ETS+EWS+WRD LAE+IMTSSSR P+HTWT  E+A LVE LV L++ G WRSDNG
Sbjct: 334 DIHYIETSNEWSQWRDNLAEEIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNG 393

Query: 152 TFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           TFR GY  QL  +M  K+PG ++ A S I+SR++ +K+
Sbjct: 394 TFRPGYLNQLARMMAFKIPGSNIHA-STIDSRIKLMKR 430

[Close]

BLAST of Spg013908.1 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-21
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDW 151
           D  Y ET++EWS+WRD LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W
Sbjct: 25  DIQYIETTNEWSQWRDNLAASMFTDWHMSTSNRAPRHVWTREEEGTLVECLMELVSMGGW 84

Query: 152 RSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           +SDNGTFR GY AQL  +M EKLPG  V A + I+ R++TLK+
Sbjct: 85  KSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKR 127

[Close]

BLAST of Spg013908.1 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-19
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDW 151
           D  Y ET++EWS+WRD+LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W
Sbjct: 309 DIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEEGTLVECLMELVSMGGW 368

Query: 152 RSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           +SDNGTFRSGY AQL  +M EKL  + V A + I+ R++TLK+
Sbjct: 369 KSDNGTFRSGYLAQLVRMMAEKLRCQ-VRATTVIDCRIKTLKR 410

[Close]

BLAST of Spg013908.1 vs. NCBI nr
Match: KAA0060558.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-18
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNG 151
           D  Y E S+EW+ WRD+LAE+I+ SSSR P+H WT  E+A LVE L+ L++ G WR DN 
Sbjct: 182 DIHYIEMSNEWTWWRDDLAEEIIASSSRLPKHNWTKEEEAGLVECLLELVNAGGWRFDNE 241

Query: 152 TFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           TFR  Y  QL  +M  K+PG ++ A + I+SR++ LK+
Sbjct: 242 TFRPRYLNQLVRMMTFKIPGSNIHALT-IDSRIKLLKR 278

[Close]

BLAST of Spg013908.1 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-18
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 95  YFETSDEWSRWRDELAEQI---------MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGD 154
           Y E S+EWS  RD+LA  +         MTSSSRA +HTWT  E+AKLVE LV L+  G 
Sbjct: 144 YIEVSNEWSELRDQLAYTMFSDWELRDQMTSSSRASKHTWTKEEEAKLVECLVELVSAGG 203

Query: 155 WRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           WRS+NGTFR GY AQL+ +M +KL   ++     ++ RV++LKK
Sbjct: 204 WRSNNGTFRHGYLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKK 247

[Close]

BLAST of Spg013908.1 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNG 151
           D  Y ETS+EWS+WRD LAE+IMTSSSR P+HTWT  E+A LVE LV L++ G WRSDNG
Sbjct: 334 DIHYIETSNEWSQWRDNLAEEIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNG 393

Query: 152 TFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           TFR GY  QL  +M  K+PG ++ A S I+SR++ +K+
Sbjct: 394 TFRPGYLNQLARMMAFKIPGSNIHA-STIDSRIKLMKR 430

[Close]

BLAST of Spg013908.1 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-22
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDW 151
           D  Y ET++EWS+WRD LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W
Sbjct: 25  DIQYIETTNEWSQWRDNLAASMFTDWHMSTSNRAPRHVWTREEEGTLVECLMELVSMGGW 84

Query: 152 RSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           +SDNGTFR GY AQL  +M EKLPG  V A + I+ R++TLK+
Sbjct: 85  KSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKR 127

[Close]

BLAST of Spg013908.1 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.3e-20
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDW 151
           D  Y ET++EWS+WRD+LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W
Sbjct: 309 DIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEEGTLVECLMELVSMGGW 368

Query: 152 RSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           +SDNGTFRSGY AQL  +M EKL  + V A + I+ R++TLK+
Sbjct: 369 KSDNGTFRSGYLAQLVRMMAEKLRCQ-VRATTVIDCRIKTLKR 410

[Close]

BLAST of Spg013908.1 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 92  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNG 151
           D  Y E S+EW+ WRD+LAE+I+ SSSR P+H WT  E+A LVE L+ L++ G WR DN 
Sbjct: 182 DIHYIEMSNEWTWWRDDLAEEIIASSSRLPKHNWTKEEEAGLVECLLELVNAGGWRFDNE 241

Query: 152 TFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           TFR  Y  QL  +M  K+PG ++ A + I+SR++ LK+
Sbjct: 242 TFRPRYLNQLVRMMTFKIPGSNIHALT-IDSRIKLLKR 278

[Close]

BLAST of Spg013908.1 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 95  YFETSDEWSRWRDELAEQI---------MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGD 154
           Y E S+EWS  RD+LA  +         MTSSSRA +HTWT  E+AKLVE LV L+  G 
Sbjct: 144 YIEVSNEWSELRDQLAYTMFSDWELRDQMTSSSRASKHTWTKEEEAKLVECLVELVSAGG 203

Query: 155 WRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK 190
           WRS+NGTFR GY AQL+ +M +KL   ++     ++ RV++LKK
Sbjct: 204 WRSNNGTFRHGYLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKK 247

The following BLAST results are available for this feature:

BLAST of Spg013908.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34114.1	2.3e-24	59.18	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0036924.1	1.1e-21	52.43	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036474.1	1.7e-19	51.46	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060558.1	4.2e-18	50.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon p...	[more]
KAA0043564.1	9.5e-18	50.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg013908.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg013908.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCB5	1.1e-24	59.18	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7T091	5.2e-22	52.43	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SYW1	8.3e-20	51.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BRF0	2.1e-18	50.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJS2	4.6e-18	50.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg013908.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 115..189
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 115..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg013908	Spg013908	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg013908.1-cds	Spg013908.1-cds-scaffold3:31420799..31420827	CDS
Spg013908.1-cds	Spg013908.1-cds-scaffold3:31421207..31421431	CDS
Spg013908.1-cds	Spg013908.1-cds-scaffold3:31422879..31422915	CDS
Spg013908.1-cds	Spg013908.1-cds-scaffold3:31425772..31425818	CDS
Spg013908.1-cds	Spg013908.1-cds-scaffold3:31426054..31426285	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg013908.1	Spg013908.1-protein	polypeptide