Spg007183.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg007183.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein RADIALIS-like 3
Location	scaffold9: 46606616 .. 46607980 (+)
Sequence length	285
RNA-Seq Expression	Spg007183.1
Synteny	Spg007183.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATCAGAAATGGCAGCCAATTCTGTCATAAAAAACCAACAACTACTCATCTGAAATTGTGATACGAACGCAGTTGTTGAATTTACGATGGGCTCTGCATCCAATTGGACGGCCAAGCAGAACAAAGTGTTCGAAAATGCTTTAGCGATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTCAAACGGCACTACGAAAAGCTCGTTGAAGATGTCAACAAGATCGAAACCGGCCAAGTTCCTTTCCCCAATTACAGAAAATCCGGACCCGCAGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGTAATTAAAATTTAAAACGCCCTTTCTTTTTCCTTTTTTATTATTATTTTTTGGTAATGTATTTTTTAAGTCGCCTTGCAAATATCGTCTGTTTTTTCTGCTTAAAAAAAAACAAAGCTAGCAGTTCAGCACTCAAAATTTTTTTGTCTGTTTTTTCAAATGTGGCCAAATTTTTCTGAAGTATTTCAAGTTCAACTAATTAAGAAATTTAAAGTAAACTAGTTTATATATATATATATATACACAAACACACACACATACACTTTTTTTTAAGCATCTAGTTTATTTTTTAAAATTAAAATTAAAATCAATACCAGGTTAAGTCAAGTAATTGGTAGATACCATTGGGATTTACTTCATAAGTCATCTTTCTGAGCGGCCTTTCAAGTTTTTTGAAAATTAATTATAATCATAAAATTTAGATTAATGTACTAAAACTTGTTACATTTACTTTGAAATTGTTGAGTTATGTTTGGATATAACTACATGTATTTTTGTTAACTCGAGCAAAATTTAGCGGATTAAGACACATTAGGTTCAAATATATGTTTATTTATTTAAATTGTTGTATAATATATTCTAAAATGTAATTTAATTTCAGCCTTTTTAACAAGAATTGCCTTGTGATTAATGCAGGATGAGGAGTCTACGGTTGCACTGAAGTATGAATGTGGGGGAGACGAGAGAGTTCTATATCTCCATTAACTTTTTAAACTAAAACTTGCAATGTTCAACCACCAAATTTTAATGAAATATGAAGGCCAAATGTAGCTAGTTTCCTTCAGCCATCTCTACTGTAATTTCTAGTTTTTATCTTTTTATCCTGAGCTGTTGTGCCAAATTGTTTTATATCGAATAAATACTCGTAGTTATAAGAGTTATTATTGTGATTGCATAATTAATAACTAGGTTGTTCACGGTGTAGAACGAATAATTTGTTTTTAGTTCAACCATGGCAAGAGTGGAAGATTGAACCATTAACTTTTAGGACGATAATTAGTATTTTTATCCAATGAG

mRNA sequence

ATGGGCTCTGCATCCAATTGGACGGCCAAGCAGAACAAAGTGTTCGAAAATGCTTTAGCGATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTCAAACGGCACTACGAAAAGCTCGTTGAAGATGTCAACAAGATCGAAACCGGCCAAGTTCCTTTCCCCAATTACAGAAAATCCGGACCCGCAGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACGGTTGCACTGA

Coding sequence (CDS)

ATGGGCTCTGCATCCAATTGGACGGCCAAGCAGAACAAAGTGTTCGAAAATGCTTTAGCGATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGAAGTCAAACGGCACTACGAAAAGCTCGTTGAAGATGTCAACAAGATCGAAACCGGCCAAGTTCCTTTCCCCAATTACAGAAAATCCGGACCCGCAGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACGGTTGCACTGA

Protein sequence

MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

Homology

[Close]

BLAST of Spg007183.1 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 5.9e-45
Identity = 89/94 (94.68%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          MGS S+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIE
Sbjct: 1  MGSGSHWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH 95
          TGQVPFPNYR+SGPA RGFCFVDEEQRMRSLRLH
Sbjct: 61 TGQVPFPNYRRSGPAVRGFCFVDEEQRMRSLRLH 94

[Close]

BLAST of Spg007183.1 vs. NCBI nr
Match: XP_008465612.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK19652.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 5.2e-41
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          MGS SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQR 88
          TGQVPFPNYR+SGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Spg007183.1 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 5.2e-41
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MGS-ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKI 60
           MGS  SNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYE+LV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH 95
           ETGQVPFPNYRKS    RGFCF+DEE+RMRSLRLH
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Spg007183.1 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          MGS SNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYE+LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH 95
          TGQVPFPNYR+S PA RGF F+D+EQRMRSL+L+
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Spg007183.1 vs. NCBI nr
Match: XP_022941099.1 (protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo] >KAG6608538.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037861.1 Protein RADIALIS-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 3.1e-38
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          M S S WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH 95
          +GQVPFP Y KS PAG GF FVDEEQRMRSL+LH
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Spg007183.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-28
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 3  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETG 62
          S+ +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL 94
           VPFPNYR SG    G     EE+RMR++RL
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Spg007183.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.4e-26
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 4   ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQ 63
           + +WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G 
Sbjct: 11  SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGH 70

Query: 64  VPFPNYR-KSGPAGRGFCFVDEEQRMRSLRL 94
           VPFP+Y+  +G + RG    DEE+RMRS++L
Sbjct: 71  VPFPDYKTTTGNSNRG-RLRDEEKRMRSMKL 100

[Close]

BLAST of Spg007183.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-25
Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          M S+++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+AEEV+RHYE L+ DVN IE
Sbjct: 6  MSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIE 65

Query: 61 TGQVPFPNYRKSG 74
          +G+ P PNYR +G
Sbjct: 66 SGRYPHPNYRSNG 78

[Close]

BLAST of Spg007183.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 2  GSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIET 61
          GS   W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 62 GQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL 94
          G+VPFPNYR +G   +      +E+R R+L++
Sbjct: 66 GKVPFPNYRTTGGNMK-----TDEKRFRNLKI 92

[Close]

BLAST of Spg007183.1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-24
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 3  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETG 62
          S S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG
Sbjct: 8  SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETG 67

Query: 63 QVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL 94
          +VP PNY+      R     D  ++M++L++
Sbjct: 68 RVPLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]

BLAST of Spg007183.1 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          MGS SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQR 88
          TGQVPFPNYR+SGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Spg007183.1 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MGS-ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKI 60
           MGS  SNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYE+LV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH 95
           ETGQVPFPNYRKS    RGFCF+DEE+RMRSLRLH
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Spg007183.1 vs. ExPASy TrEMBL
Match: A0A1S3CPA0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          MGS SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQR 88
          TGQVPFPNYR+SGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Spg007183.1 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.6e-41
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          MGS SNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYE+LVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH 95
          TGQVPFPNYR+S PA RGF F+D+EQRMRSL+L+
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Spg007183.1 vs. ExPASy TrEMBL
Match: A0A6J1FM85 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          M S S WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH 95
          +GQVPFP Y KS PAG GF FVDEEQRMRSL+LH
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Spg007183.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-29
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 3  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETG 62
          S+ +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL 94
           VPFPNYR SG    G     EE+RMR++RL
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Spg007183.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-27
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 4   ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQ 63
           + +WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G 
Sbjct: 11  SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGH 70

Query: 64  VPFPNYR-KSGPAGRGFCFVDEEQRMRSLRL 94
           VPFP+Y+  +G + RG    DEE+RMRS++L
Sbjct: 71  VPFPDYKTTTGNSNRG-RLRDEEKRMRSMKL 100

[Close]

BLAST of Spg007183.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 3  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETG 62
          S S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG
Sbjct: 8  SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETG 67

Query: 63 QVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL 94
          +VP PNY+      R     D  ++M++L++
Sbjct: 68 RVPLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]

BLAST of Spg007183.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-25
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 3  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETG 62
          S S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG
Sbjct: 8  SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETG 67

Query: 63 QVPFPNYR 71
          +VP PNY+
Sbjct: 68 RVPLPNYK 75

[Close]

BLAST of Spg007183.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-23
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIE 60
          M S+S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE
Sbjct: 6  MSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

Query: 61 TGQVPFPNYR 71
             VP P Y+
Sbjct: 66 QDLVPLPKYK 75

The following BLAST results are available for this feature:

BLAST of Spg007183.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905673.1	5.9e-45	94.68	protein RADIALIS-like 3 [Benincasa hispida]	[more]
XP_008465612.1	5.2e-41	93.10	PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS...	[more]
XP_022138113.1	5.2e-41	87.37	protein RADIALIS-like 3 [Momordica charantia]	[more]
XP_004147867.1	1.2e-40	88.30	protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_0...	[more]
XP_022941099.1	3.1e-38	85.11	protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-li...	[more]

BLAST of Spg007183.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	2.3e-28	64.84	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	6.4e-26	60.44	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	4.1e-25	67.12	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q58FS3	1.6e-24	57.61	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	2.0e-24	58.24	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Spg007183.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7Z0	2.5e-41	93.10	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CC55	2.5e-41	87.37	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1	[more]
A0A1S3CPA0	2.5e-41	93.10	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1	[more]
A0A0A0LGK8	5.6e-41	88.30	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 S...	[more]
A0A6J1FM85	1.5e-38	85.11	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1	[more]

BLAST of Spg007183.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	1.7e-29	64.84	RAD-like 1	[more]
AT2G21650.1	4.5e-27	60.44	Homeodomain-like superfamily protein	[more]
AT1G75250.2	1.5e-25	58.24	RAD-like 6	[more]
AT1G75250.1	5.5e-25	72.06	RAD-like 6	[more]
AT1G19510.1	5.2e-23	65.71	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 3..55 e-value: 3.0E-7 score: 40.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..53 score: 6.214041
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 6..53 e-value: 8.32195E-7 score: 40.2514
None	No IPR available	GENE3D	1.10.10.60		coord: 1..66 e-value: 1.8E-24 score: 87.3
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..94
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..94
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 2..57 score: 10.160579
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 6..60

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg007183	Spg007183	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg007183.1-five_prime_utr	Spg007183.1-five_prime_utr-scaffold9:46606616..46606703	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg007183.1-cds	Spg007183.1-cds-scaffold9:46606704..46606963	CDS
Spg007183.1-cds	Spg007183.1-cds-scaffold9:46607600..46607624	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg007183.1-three_prime_utr	Spg007183.1-three_prime_utr-scaffold9:46607625..46607980	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg007183.1	Spg007183.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity