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Spg005949.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGAATGGAATAGTAACAAGTGCCGGCATTTTAATGGAAGTGCTTCTTCTTCTACCGCTTCTGGTGGCTCCGGCGAATGTGTTCAGAGAATACATCGGAGCCGAGTTCAACGACGTCAAATTTTCCGACGTTCCGATTAACCCAAACGTAGAAGAGTTTCATTTTCTCCTGTCGTTTGCCATCGATTTCGACAGCTCCCGCCGTTCTTTCACTAATGGAGTATTCAACATTTTCTGGGACTCCGATAATCTTAGCCCTTCTGCTGTTGCTGCCATTAGAAAGGTAATTATCCTATTTGCCCATCGTTGCATAGCTCAACTGGTTAAGACATCATATCTGTGACCGAGATTGGATAGGGTTTCGATCCATCTTCATGTATTGTTGAACTAATAATATTATTTTTCACTATTTTATCTTTTAGAACTCTTTTTATGTGAATTTTTATTTTAGTATAGGAGGTATAATATTTGGTTGATCTGAAGTTAGTTCAATAGATAATAAAACATTGCTAAAGTTGAAAATATTTGTTGGACAGAAAGAATTATAATATTTGGATTTTAAACCATTTACTTTAGGCCAGTTTGATAACCATTTGATTTTTGGTTTTTGGTTTTTGAAAATTATGCTTATTTTCTCTTAATTTTCCTACCATGGTTTTCATCTTTGTCAAAAGCACATTTGAATTCCTAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAATTATTTTTTTAGGCCCCGTTTGATAATAATTTGGTTTTTGAAAATTTGGCTTGTTTTCTTCAAATTTTCCTACCATGATTTTCATATTTGCCAATGACACATTTGAGTTCCTAGCCAAATTCTAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTAGTTGTTTTCAAAATTTGCTTGGTTTTTAAAAACAAGGAAAGAAAAGTATTAGCAAAACATAGAAACTTGTAGGTGGAAGTATGATTTATAAGCTTAATTTTCAAAAACCAAAAACAAAAAACCAAGGTCCTGTTTGATAACCATTTGGTTTTTTGTTTTTGGTTTTTTTTTTTCATATTTGTGAATGACACATTTGAATTCTTAGCCAAATTCTAAAAACAAAAACAAGTTTTTGAAAATTACTTTTTTTAGTTTTCAAAATTTGCTTGGTTTTTAAAAACAAGGAAAGAAAGGTATTAGCAAAACCAAGAAACTTGTAGATGGAAGTAGGATTTATAAGCTTAATTTTCAAAAACAAAAAACCAAAGACCAAATGGTTATCAAACGGGGCCCAAATGGTTATCAAACGGGCCCTTAATGTTTGGTTTTACACTTTTAAACTCAATCTTTATATCATCAGAATTTATTTTTAACGATTAAATACATGTTTGAGAGTGATTTTAAACCTGACAAAGGTAATTTCAACCATTTCTGTTCTATCTACTTTGTGTTAAAAAGGATCATTCAAATGTAAGAGTGGGTGTGAGTCTTGGAGGAGACAGTGTGGGAAAAGCTGGCTTTGCTTATTTCAAACCTTCTTCAGTGGCTTCATGGGTTTCCAACGCAGAACGTTCACTCACAAAACTCATAAACACCTACAACCTCGACGGCATTGACATCGATTACGAACACTTCAAGTCCGATCCGAACACGTTCGCCGAGTGCATCGGAGAGCTGATCGGAAGGCTAAAGAAGAAGGGAGTCATCTCATTTGCTTCCATTGCCCCATTTGACAAGGCTGAAGTTCAGAGCCACTACTTGGCCTTGTGGAGAAGCTACAGCCACTTGATAGATTATGTCAACTTTCAGTTCTATGCTTATGATAAAAGCACCACAGTTCCTCAGTTTATCCAACATTTCAAGGCTCAAATCTCAAATTATGAAGGTGGTAGGGTTTTGGCAAGCTTGGCCAGCGACGATAGCGGCGGATTGTTGCCGAAGAACGGGTTCTTTACGGCGTGTCGGAGGCTGAGGTCGGAGAAGCTCCTCCAAGGAATCTTTGTTTGGTCTGCAGATGATTCTGAAGCTAATGGTTTTCGCTATGAAAAGAAGGCACAAGCTCTTCTAGCAATGCCCAACTAG ATGGAAATGAATGGAATAGTAACAAGTGCCGGCATTTTAATGGAAGTGCTTCTTCTTCTACCGCTTCTGGTGGCTCCGGCGAATGTGTTCAGAGAATACATCGGAGCCGAGTTCAACGACGTCAAATTTTCCGACGTTCCGATTAACCCAAACGTAGAAGAGTTTCATTTTCTCCTGTCGTTTGCCATCGATTTCGACAGCTCCCGCCGTTCTTTCACTAATGGAGTATTCAACATTTTCTGGGACTCCGATAATCTTAGCCCTTCTGCTGTTGCTGCCATTAGAAAGGATCATTCAAATGTAAGAGTGGGTGTGAGTCTTGGAGGAGACAGTGTGGGAAAAGCTGGCTTTGCTTATTTCAAACCTTCTTCAGTGGCTTCATGGGTTTCCAACGCAGAACGTTCACTCACAAAACTCATAAACACCTACAACCTCGACGGCATTGACATCGATTACGAACACTTCAAGTCCGATCCGAACACGTTCGCCGAGTGCATCGGAGAGCTGATCGGAAGGCTAAAGAAGAAGGGAGTCATCTCATTTGCTTCCATTGCCCCATTTGACAAGGCTGAAGTTCAGAGCCACTACTTGGCCTTGTGGAGAAGCTACAGCCACTTGATAGATTATGTCAACTTTCAGTTCTATGCTTATGATAAAAGCACCACAGTTCCTCAGTTTATCCAACATTTCAAGGCTCAAATCTCAAATTATGAAGGTGGTAGGGTTTTGGCAAGCTTGGCCAGCGACGATAGCGGCGGATTGTTGCCGAAGAACGGGTTCTTTACGGCGTGTCGGAGGCTGAGGTCGGAGAAGCTCCTCCAAGGAATCTTTGTTTGGTCTGCAGATGATTCTGAAGCTAATGGTTTTCGCTATGAAAAGAAGGCACAAGCTCTTCTAGCAATGCCCAACTAG ATGGAAATGAATGGAATAGTAACAAGTGCCGGCATTTTAATGGAAGTGCTTCTTCTTCTACCGCTTCTGGTGGCTCCGGCGAATGTGTTCAGAGAATACATCGGAGCCGAGTTCAACGACGTCAAATTTTCCGACGTTCCGATTAACCCAAACGTAGAAGAGTTTCATTTTCTCCTGTCGTTTGCCATCGATTTCGACAGCTCCCGCCGTTCTTTCACTAATGGAGTATTCAACATTTTCTGGGACTCCGATAATCTTAGCCCTTCTGCTGTTGCTGCCATTAGAAAGGATCATTCAAATGTAAGAGTGGGTGTGAGTCTTGGAGGAGACAGTGTGGGAAAAGCTGGCTTTGCTTATTTCAAACCTTCTTCAGTGGCTTCATGGGTTTCCAACGCAGAACGTTCACTCACAAAACTCATAAACACCTACAACCTCGACGGCATTGACATCGATTACGAACACTTCAAGTCCGATCCGAACACGTTCGCCGAGTGCATCGGAGAGCTGATCGGAAGGCTAAAGAAGAAGGGAGTCATCTCATTTGCTTCCATTGCCCCATTTGACAAGGCTGAAGTTCAGAGCCACTACTTGGCCTTGTGGAGAAGCTACAGCCACTTGATAGATTATGTCAACTTTCAGTTCTATGCTTATGATAAAAGCACCACAGTTCCTCAGTTTATCCAACATTTCAAGGCTCAAATCTCAAATTATGAAGGTGGTAGGGTTTTGGCAAGCTTGGCCAGCGACGATAGCGGCGGATTGTTGCCGAAGAACGGGTTCTTTACGGCGTGTCGGAGGCTGAGGTCGGAGAAGCTCCTCCAAGGAATCTTTGTTTGGTCTGCAGATGATTCTGAAGCTAATGGTTTTCGCTATGAAAAGAAGGCACAAGCTCTTCTAGCAATGCCCAACTAG MEMNGIVTSAGILMEVLLLLPLLVAPANVFREYIGAEFNDVKFSDVPINPNVEEFHFLLSFAIDFDSSRRSFTNGVFNIFWDSDNLSPSAVAAIRKDHSNVRVGVSLGGDSVGKAGFAYFKPSSVASWVSNAERSLTKLINTYNLDGIDIDYEHFKSDPNTFAECIGELIGRLKKKGVISFASIAPFDKAEVQSHYLALWRSYSHLIDYVNFQFYAYDKSTTVPQFIQHFKAQISNYEGGRVLASLASDDSGGLLPKNGFFTACRRLRSEKLLQGIFVWSADDSEANGFRYEKKAQALLAMPN Homology
BLAST of Spg005949.1 vs. NCBI nr
Match: XP_038895814.1 (chitinase 2-like [Benincasa hispida]) HSP 1 Score: 512.3 bits (1318), Expect = 2.9e-141 Identity = 244/276 (88.41%), Postives = 263/276 (95.29%), Query Frame = 0
BLAST of Spg005949.1 vs. NCBI nr
Match: KAG6607221.1 (hypothetical protein SDJN03_00563, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036906.1 hypothetical protein SDJN02_00526, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 511.1 bits (1315), Expect = 6.4e-141 Identity = 252/306 (82.35%), Postives = 276/306 (90.20%), Query Frame = 0
BLAST of Spg005949.1 vs. NCBI nr
Match: XP_023524573.1 (chitinase 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 509.6 bits (1311), Expect = 1.8e-140 Identity = 250/306 (81.70%), Postives = 277/306 (90.52%), Query Frame = 0
BLAST of Spg005949.1 vs. NCBI nr
Match: XP_022949055.1 (chitinase 2-like [Cucurbita moschata]) HSP 1 Score: 509.2 bits (1310), Expect = 2.4e-140 Identity = 250/299 (83.61%), Postives = 273/299 (91.30%), Query Frame = 0
BLAST of Spg005949.1 vs. NCBI nr
Match: XP_022156744.1 (chitinase 2-like [Momordica charantia]) HSP 1 Score: 495.4 bits (1274), Expect = 3.6e-136 Identity = 250/305 (81.97%), Postives = 270/305 (88.52%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy Swiss-Prot
Match: Q9SLP4 (Chitinase 1 OS=Tulipa saxatilis subsp. bakeri OX=110455 PE=1 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 1.9e-100 Identity = 189/305 (61.97%), Postives = 231/305 (75.74%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy Swiss-Prot
Match: Q7M443 (Chitinase 2 OS=Tulipa saxatilis subsp. bakeri OX=110455 PE=1 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 1.4e-98 Identity = 179/275 (65.09%), Postives = 218/275 (79.27%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy Swiss-Prot
Match: P39657 (RuBisCO-associated protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.7e-19 Identity = 63/188 (33.51%), Postives = 95/188 (50.53%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy TrEMBL
Match: A0A6J1GBP9 (chitinase 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452519 PE=3 SV=1) HSP 1 Score: 509.2 bits (1310), Expect = 1.2e-140 Identity = 250/299 (83.61%), Postives = 273/299 (91.30%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy TrEMBL
Match: A0A6J1DUG9 (chitinase 2-like OS=Momordica charantia OX=3673 GN=LOC111023583 PE=4 SV=1) HSP 1 Score: 495.4 bits (1274), Expect = 1.7e-136 Identity = 250/305 (81.97%), Postives = 270/305 (88.52%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy TrEMBL
Match: A0A0A0LV90 (Glyco_hydro_18 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G496300 PE=3 SV=1) HSP 1 Score: 482.6 bits (1241), Expect = 1.2e-132 Identity = 234/299 (78.26%), Postives = 261/299 (87.29%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy TrEMBL
Match: A0A5A7SWP3 (Chitinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00520 PE=3 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.5e-132 Identity = 236/300 (78.67%), Postives = 264/300 (88.00%), Query Frame = 0
BLAST of Spg005949.1 vs. ExPASy TrEMBL
Match: A0A1S3C5A3 (chitinase 2-like OS=Cucumis melo OX=3656 GN=LOC103497192 PE=3 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.5e-132 Identity = 236/300 (78.67%), Postives = 264/300 (88.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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