Spg005814.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg005814.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	serine/arginine-rich splicing factor SR45a-like
Location	scaffold11: 1345321 .. 1349068 (+)
Sequence length	1329
RNA-Seq Expression	Spg005814.1
Synteny	Spg005814.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAAGGAGCTAACGAGGACAACCCGACACGAGTCCGAAAATAGGACCAGAAAACGGACTCTGGAGGCAAAACAGGGCAGAGGGTTGGACCAAGGACGGAGGGACCGGGCCTTGGCCCAACACATGCTCGGCCTCGGCCCGCTTGCGCGAGCCGAGTTCTTTCGCTTCTGTTTGGTCCGTAGTGCTCCTGGATGCCCTGTTTCCACTTGGTTCAACCCAAATCGTCTCCGAAAAGTCTAGAAACCCTAGGGCAGGAAAAGGTATTTAAGCCCTTCTTCGTCACCGAGGAAGGGATCCCGAAACTCATTCCTTGAACTCTTTCCTCTTACTTTGCTCTTATGCTCTCCTCCCTCAACTTTTTGACTTAAGCATTGGAGGCGGTGTGGCAAGCATTACACCGATGTGCAAGTTTACTGTTTTGCAGGCCACGTCTTCCCGCATATCATACAAATTTACCGTTGGTGGCACGTGACTGCCCATATTTTGTCATCAACAATAATAAAAGGAAAAAATCAAGTATTGTTTTCTTTATTCCATATTTATATAGAAAAGTTAGTCTTTTTTTTTTTTTTTGAAAAATAGAAAAGTTAGTCATAACAAACTAATATTATATAGACTAATATCAATACATACTAATGAGAACTATCTTTATACAAACGACTTTAAGTTTCCTTTCTAACTCATATTTTTATTCTTTCAAAAAAAAAAAAAAAACTCATATTTTTATTATTTTTATTATTTTTTTATAAAAAAAGATGATAGATATTTTCATATTAAGGAAAAAAAATATATTTATCATCTTCCGTTAACCACACTGTTGGATTTGGACAATTTCTCCAAGTTTGGAGATCTAAGGGTCATATTCTGACACGTAACGGAAGACCACGATAAGATTATGATTGCGAGACACTGGATTGCTACTCCACGATTTTGAAAAGGTCAATTGAATACGGAAACGAAAATTTTTAAAATTGAGTTTTATTGTGATTTGGCGTCCGATGCTCCAGAAGCTTCTTTCGCCTCGAGGCTTATATATAACGCTTTTGGATTTCGCACGCAAAATCTCTAGTTGATGCGTTCTTGAGCGAGCGATTGTCGTTGTTGTTGAGAGAGAAGAATACTCAGTTGCCTTCAGCTTCGATTTGGGTTTTGCTTCCGCTGATTTGAATGGTAAGTTCTCTCTCTGTCTCTCAGTTGATGAATCTTTGCATGTCTTTTCGTTGTCTGAGATGATACGTTGAGGTTCTGATCTACTTTCGCCTTTGATTCTTGCTGTCGATGATGTTAACGAAAAGAATTAGGTTAGCGTTAGGTTATTATTTTGATTGTTTATTCATGTGGTACGAATGCAGTGTTTTATGTAATTCTCATGGAAGTCTTTTGTTAAATTAGAACCTCAACGAAGTAGATATTATGTGAAATTTGCATGTCTTTTCGTAGTTTGAGATGATATGTTTCGGGTTCTGATCTTCTTGCGCGTTTGATTCTGCATTCGTTGATGTTTTCCCGAAGAATTAGGTTCGGGTTATTAGTTAGATTGTAGAATCTCATCGGAGTAGATATTGCATTTTTAGCCATTTGAAGGTCATGGATCATCTATTTCTTTATTTGTCTGCCTTTCGATGAATATTCAATTGACGGTTCAATTCACCAGATGTTCGATCATATTCAACAAAACTGTTGCCATTATGGTTTTTGGATTTAGTTTTGTTTTGTCTGATCTTGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGGTCTCCTTCATACAAACGTTCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGTACTTTTTGCTCGATACCATCTGCTTTCTCGATTTTTCCTTAGATCATTTGTACGTTATTTATTCATTTTTAGTTGGTGGATTCATCATTTGTTTTTCAGGAGCCCTTCAAGTGACGTCGAAAACCCTGGTAACAATTTGTACGTCACTGGTTTGTCACCTAGAATAACGAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTACGTCCCAGATTGTTTATTTTCTATATAACCTTCTTTTTTGGGCTTGTATTTGTGGTGATGTTGGTGACTGAATTATCAGACTATTTTCTCAGTTTGTGATCAAATTTTTTATTCCCCAGGTGCTAGATGTTCATCTTGTGGCTGATCCATGGACTAGAGAATCTCGTGGATTTGGATTTATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGAATAATTACCGTGGAGAAGGTAAAAATTAAACCAAGTATAATTTCATAGACTTGGTCTGTTTCTCATTATTACTATTGTCTTGTACTTCAACTTGGATCTCTGGATGGTTTGTTGTTAGAGATTTGAGTATTTTGCTTCTTTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAAACAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTTTTGCCAATTGAATCCTGTGTTTCAGTATTTTAACCTTTTTTCATTATAAATTTGACTCTAAACTGTGACTTGCTCTTCTTGTATTTTTCTTAGATGGACGATTGAGTTGTCTCACTTTTTATCTTTAATTTTTTGATAGGCTCGAAGACGGAGAGGTAGAACTCCTACTCCAGGGAGATATCTTGGACTTAGAACAGTTCATGGTGAGGTTTTAACCTAATGTTTGGTTTATTGCTGTGAAATATCTTGATGTTTCTGTCTAATCCTTTTCTTTTCAACAGTGAGGCGTAGATCACGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGAAGCTCAAGCCACTCATCTCATTATTCATCTGAACGTAGCAGGAGCAGATCCCATTCTCCTAACCAGCATGGAAGATCATATGGTTCCCCATACCGCTATAGATCATACTCCCCTTACAGCCGACGAAGATATGATTCTCCCTATTATAGGCATCATAGATCGTATTCTCGATCCCGCTCTCCTTATAGGTCACCTGCTAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTATTCCCCTGATCCTTACTACAGAAGGCACAGGTATCGGTCAGTTTCTAGGAGTGTTTCACCAAAGGCCAGGATTTCTAGCAGACGTTATTCTCGCAGTTATTCTCCAAGGCCTAGGAGAAGAACCTTGAGGAGTTGCTCTCGCAGCCCCTCTTGGGAATCAAGGAGAAGCTATTCACGTAGTACTTCCCCTGAACGAAGCAGGAGATCAGGGAGCTATTCACGTAGTGTTTCTCCTGAACCAAGAAGCTCGAGGAGTCGCTCTCGCAGCCATACCCCGAGACGACATGACTACAAGCTTTATCGCCCACAGAAGAGAGGGTATTCTGGTGGTAGTCGATCAAGAAGTCAAAGCGTGGTTTCAAGATCTGTTAGTCCTGCATGATTGATCGATCATACTTCCCTGCTGCCTTTTTTGTGTTAAGAATGTTAGTATTTTTCATGGGAATCAATCAGCTGCAATTCAGTCACTATTTTCTGGACAATGTAAAACTTAATGCCTACTTTTATTTCTTGTCATTGGTGGTTCTGTAAGTAAATACTATTCCATTTATGTGTGGAAACGAAAAAGATGCCAATCGGGAATAATATTTGCTCTCTACTCTTG

mRNA sequence

ATGTATAAGGAGCTAACGAGGACAACCCGACACGAGTCCGAAAATAGGACCAGAAAACGGACTCTGGAGGCAAAACAGGGCAGAGGGTTGGACCAAGGACGGAGGGACCGGGCCTTGGCCCAACACATGCTCGGCCTCGGCCCGCTTGCGCGAGCCGAGTTCTTTCGCTTCTGTTTGGTCCGTAGTGCTCCTGGATGCCCTGTTTCCACTTGGTTCAACCCAAATCGTCTCCGAAAAATGTCGTACTCCAGAAGGTCTAGGTACTCCCGGTCTCCTTCATACAAACGTTCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCAAGTGACGTCGAAAACCCTGGTAACAATTTGTACGTCACTGGTTTGTCACCTAGAATAACGAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCTGATCCATGGACTAGAGAATCTCGTGGATTTGGATTTATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGAATAATTACCGTGGAGAAGGCTCGAAGACGGAGAGGTAGAACTCCTACTCCAGGGAGATATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGATCACGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGAAGCTCAAGCCACTCATCTCATTATTCATCTGAACGTAGCAGGAGCAGATCCCATTCTCCTAACCAGCATGGAAGATCATATGGTTCCCCATACCGCTATAGATCATACTCCCCTTACAGCCGACGAAGATATGATTCTCCCTATTATAGGCATCATAGATCGTATTCTCGATCCCGCTCTCCTTATAGGTCACCTGCTAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTATTCCCCTGATCCTTACTACAGAAGGCACAGGTATCGGTCAGTTTCTAGGAGTGTTTCACCAAAGGCCAGGATTTCTAGCAGACGTTATTCTCGCAGTTATTCTCCAAGGCCTAGGAGAAGAACCTTGAGGAGTTGCTCTCGCAGCCCCTCTTGGGAATCAAGGAGAAGCTATTCACGTAGTACTTCCCCTGAACGAAGCAGGAGATCAGGGAGCTATTCACGTAGTGTTTCTCCTGAACCAAGAAGCTCGAGGAGTCGCTCTCGCAGCCATACCCCGAGACGACATGACTACAAGCTTTATCGCCCACAGAAGAGAGGGTATTCTGGTGGTAGTCGATCAAGAAGTCAAAGCGTGGTTTCAAGATCTGTTAGTCCTGCATGA

Coding sequence (CDS)

ATGTATAAGGAGCTAACGAGGACAACCCGACACGAGTCCGAAAATAGGACCAGAAAACGGACTCTGGAGGCAAAACAGGGCAGAGGGTTGGACCAAGGACGGAGGGACCGGGCCTTGGCCCAACACATGCTCGGCCTCGGCCCGCTTGCGCGAGCCGAGTTCTTTCGCTTCTGTTTGGTCCGTAGTGCTCCTGGATGCCCTGTTTCCACTTGGTTCAACCCAAATCGTCTCCGAAAAATGTCGTACTCCAGAAGGTCTAGGTACTCCCGGTCTCCTTCATACAAACGTTCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCAAGTGACGTCGAAAACCCTGGTAACAATTTGTACGTCACTGGTTTGTCACCTAGAATAACGAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCTGATCCATGGACTAGAGAATCTCGTGGATTTGGATTTATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGAATAATTACCGTGGAGAAGGCTCGAAGACGGAGAGGTAGAACTCCTACTCCAGGGAGATATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGATCACGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGAAGCTCAAGCCACTCATCTCATTATTCATCTGAACGTAGCAGGAGCAGATCCCATTCTCCTAACCAGCATGGAAGATCATATGGTTCCCCATACCGCTATAGATCATACTCCCCTTACAGCCGACGAAGATATGATTCTCCCTATTATAGGCATCATAGATCGTATTCTCGATCCCGCTCTCCTTATAGGTCACCTGCTAGGAGACGTGACAGGTCGTACTCACCTTATGACTATTATTCCCCTGATCCTTACTACAGAAGGCACAGGTATCGGTCAGTTTCTAGGAGTGTTTCACCAAAGGCCAGGATTTCTAGCAGACGTTATTCTCGCAGTTATTCTCCAAGGCCTAGGAGAAGAACCTTGAGGAGTTGCTCTCGCAGCCCCTCTTGGGAATCAAGGAGAAGCTATTCACGTAGTACTTCCCCTGAACGAAGCAGGAGATCAGGGAGCTATTCACGTAGTGTTTCTCCTGAACCAAGAAGCTCGAGGAGTCGCTCTCGCAGCCATACCCCGAGACGACATGACTACAAGCTTTATCGCCCACAGAAGAGAGGGTATTCTGGTGGTAGTCGATCAAGAAGTCAAAGCGTGGTTTCAAGATCTGTTAGTCCTGCATGA

Protein sequence

MYKELTRTTRHESENRTRKRTLEAKQGRGLDQGRRDRALAQHMLGLGPLARAEFFRFCLVRSAPGCPVSTWFNPNRLRKMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHSPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDYYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSVVSRSVSPA

Homology

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BLAST of Spg005814.1 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 517.7 bits (1332), Expect = 9.9e-143
Identity = 315/376 (83.78%), Postives = 328/376 (87.23%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHL+ADP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY RSSS S+HYSS+RSRSRS S N
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 260 QHGRSYGSPYRYRSY--------SPYSRRRYDSP-YYRHHRSYSRSRSPYRSPARRRDRS 319
           +H RSYGSPY  RSY        SPY RRRYDSP YYRHHRSYSRS SPYR  +  RDRS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWS--RDRS 240

Query: 320 YSPYDYYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWES 379
           YSPYDYYSPDPYYRRHRYRSVSRS+SPK+R + R YSRSYSP PRRRTLR+ S SPS ES
Sbjct: 241 YSPYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPSRES 300

Query: 380 RRSYSRSTSPERSRRSGS--YSRSVSPE-PRSSRSRSRSHTPRRHDYKLYRPQKRGYSGG 439
           RRSYSRS SPERSRRSGS  YS S+SPE  RS RSRS SHTPRRH+      +KRGYS  
Sbjct: 301 RRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHE----STRKRGYSSR 360

Query: 440 SRSRSQSVVSRSVSPA 443
           SRSRSQSV SRSVSPA
Sbjct: 361 SRSRSQSVTSRSVSPA 369

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BLAST of Spg005814.1 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 517.3 bits (1331), Expect = 1.3e-142
Identity = 315/367 (85.83%), Postives = 325/367 (88.56%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MS SRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSCSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEA+ CIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPLTRESRGFGFITMSSNDEADNCIKYLNRSVLEGRIITVEKARR 120

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY RSSS S+ YSS RSRSRSHS +
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTDYSSNRSRSRSHSVD 180

Query: 260 QHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDYYSP 319
           +H RSYGS Y YRSYS YSRRRYDSP  R H+SYSRSRSPYR   R RDRSYSPYD YSP
Sbjct: 181 RHRRSYGSSYNYRSYS-YSRRRYDSPDCRRHKSYSRSRSPYR--RRHRDRSYSPYDDYSP 240

Query: 320 DPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTL-RSCSRSPSWESRRSYSRST 379
           DPYYRRHRYRSVSRS+SPKARISSR YSRSYSP PRRRTL RS SRS SWESRRSYSRS 
Sbjct: 241 DPYYRRHRYRSVSRSLSPKARISSRHYSRSYSPEPRRRTLRRSYSRSLSWESRRSYSRSI 300

Query: 380 SPERSRRS-GSYSRSVSPE-PRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSVV 439
           SPERSRRS  SYS SVSPE  RSSRSRSRS+T RRH YKLY  ++R     SRSRS+SV 
Sbjct: 301 SPERSRRSWSSYSYSVSPERSRSSRSRSRSNTSRRHSYKLYESRRR-----SRSRSRSVT 359

Query: 440 SRSVSPA 443
           SRSVSPA
Sbjct: 361 SRSVSPA 359

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BLAST of Spg005814.1 vs. NCBI nr
Match: XP_022150940.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia])

HSP 1 Score: 505.4 bits (1300), Expect = 5.1e-139
Identity = 313/379 (82.59%), Postives = 324/379 (85.49%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEK
Sbjct: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCIKYLNRSVLEGRIITVEKARR
Sbjct: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKARR 121

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPY RSSS SS YSSERSRSRSHSP 
Sbjct: 122 RRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSHSPY 181

Query: 260 QHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSR--SRSPY-RSPARRRDRSYSP-YD 319
           +H RSYGSPY +RSYSPYSRRRYDSPYYR HRSYSR  SRSPY RSP RR DRSYS  YD
Sbjct: 182 RHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSSYYD 241

Query: 320 YYSPDP-YYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWE----- 379
           YYS D  YYRRHRYRSVSRSVSPKARIS R YSRSYSPRP RRTLRS SRSPS       
Sbjct: 242 YYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRIYSR 301

Query: 380 ----SRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQ-KRGY 439
                 RSYSRS SPERS+RSGSY    S   R SRSRSRSHT RRH +K+Y    KR Y
Sbjct: 302 SPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR-SRSRSRSHTFRRHSHKVYENSGKREY 361

Query: 440 SGGSRSRSQSVVSRSVSPA 443
           SG SRSRS+SVVSRSVSPA
Sbjct: 362 SGXSRSRSRSVVSRSVSPA 378

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BLAST of Spg005814.1 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 503.4 bits (1295), Expect = 1.9e-138
Identity = 303/366 (82.79%), Postives = 313/366 (85.52%), Query Frame = 0


Query: 79  KMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELE 138
           +MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELE
Sbjct: 32  QMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELE 91

Query: 139 KHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKAR 198
           KHFSAEGTVLDVHLV DPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKAR
Sbjct: 92  KHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKAR 151

Query: 199 RRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSP 258
           RRRGRTPTPGRY GLRTV VRRRSRSYSSRRSPSYSPY RS S SS+YSS+RSRSRSHSP
Sbjct: 152 RRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP 211

Query: 259 NQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-YRSPARRRDRSYSPYDYY 318
           N+  RS  SPY YRSYSPYS RRYDSPYYR HRSYSRS SP  R P RR DRSYSPYDY 
Sbjct: 212 NRRRRSNDSPYHYRSYSPYSGRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYDYC 271

Query: 319 SPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYSRS 378
           SPDPYYRRHR RSVSRSVSPKAR+SSRRYSRSYSPR RR   RS SRS      RSYSRS
Sbjct: 272 SPDPYYRRHRDRSVSRSVSPKARVSSRRYSRSYSPRHRRSASRSYSRS------RSYSRS 331

Query: 379 TSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSVVS 438
            SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       ++ GYSGG    S SV S
Sbjct: 332 LSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH-------KRGGYSGG----SGSVAS 380

Query: 439 RSVSPA 443
           RSVSPA
Sbjct: 392 RSVSPA 380

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BLAST of Spg005814.1 vs. NCBI nr
Match: XP_022948994.1 (serine/arginine-rich splicing factor SR45a-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 501.1 bits (1289), Expect = 9.6e-138
Identity = 304/365 (83.29%), Postives = 313/365 (85.75%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHLV DPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S SS+YSS+RSRSRSHSPN
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 260 QHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-YRSPARRRDRSYSPYDYYS 319
           +  RS  SPYRYRSYSPYSRRRYDSPYYR HRSYSRS SP  RSP RRRDRSYSPYDY S
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSPYDYCS 240

Query: 320 PDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYSRST 379
           PD YYRRHR RSVSRSVSPKAR+SSRRYS SYSPR RR   RS SRS      RSYSRS 
Sbjct: 241 PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYSRSL 300

Query: 380 SPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSVVSR 439
           SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       ++ GYSGG    S SV SR
Sbjct: 301 SPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH-------KRGGYSGG----SGSVASR 348

Query: 440 SVSPA 443
           SVSPA
Sbjct: 361 SVSPA 348

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BLAST of Spg005814.1 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.8e-62
Identity = 214/390 (54.87%), Postives = 238/390 (61.03%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 139
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 140 LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 199
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 200 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHS 259
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S  RS S+SS       R RS+S
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSS------DRGRSYS 210

Query: 260 PNQHGRSYGSPYRYRSYSP-YSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 319
           P     SYG   R  SYSP Y RRR+ SP        SRS SP     RRRDRSYSPY  
Sbjct: 211 P-----SYGRRGRSSSYSPFYRRRRFYSP--------SRSPSPDDRYNRRRDRSYSPY-- 270

Query: 320 YSPDPYYRRHRYRSVSRSVSPKAR--ISSRRY---SRSYSPRPRRRTLRSCSRSPSWESR 379
                Y RR R RS SR+   + R     RRY   SRSYSPR R R  RSC  SP +  R
Sbjct: 271 -----YRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRARD-RSC--SPYYRGR 330

Query: 380 -RSYS-------RSTSPERS--RRSGSYSRSVSP---------EPRSSRSRSRSHTPRRH 439
            RSYS       RS SPE    RR  S S SVSP          PR  R  SRS + RRH
Sbjct: 331 DRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-RRH 382

Query: 440 DYKLYRPQKRGYSGGSRSRSQSVVSRSVSP 442
           D    R     +S  +RS +    SRSVSP
Sbjct: 391 D----RQSSMCHSRSARSST----SRSVSP 382

[Close]

BLAST of Spg005814.1 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-12
Identity = 70/209 (33.49%), Postives = 110/209 (52.63%), Query Frame = 0


Query: 99  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWT 158
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 159 RESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHV 218
           + SRGFGF++ S+ +EA   I  LN     GR++ V+KA+R R  +PTPG+Y+G      
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDR--- 198

Query: 219 RRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHSPNQHGRSYGSPYRYRSYSPYSR 278
           RR SR + S        YR +++    S+    S   S  Q   S G+ YR   Y+  SR
Sbjct: 199 RRNSRDFPSNNKD--GGYRRNNYRDRDSNRYRNSYRPSRPQREHSPGN-YRKERYNVDSR 258

Query: 279 RRYDSPYYRHHRSYSRSRSPYRSPARRRD 308
            R +  +  H RS++ +   +  P  R D
Sbjct: 259 PRRERHF--HGRSFAHAEH-HSVPNMRND 278

[Close]

BLAST of Spg005814.1 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-11
Identity = 103/292 (35.27%), Postives = 124/292 (42.47%), Query Frame = 0


Query: 62  SAPGCPVSTWFNPNRLRKMSYSRRSR---YSRSPS-----------YKRSVSRSLSRSRS 121
           SA G   S    P R R    SRRSR    SRS S           Y RS SRS S  RS
Sbjct: 22  SAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRS 81

Query: 122 RSRSPSSDVE---------------------NPGNN--LYVTGLSPRITRRELEKHFSAE 181
           RSRS S D                       NP  N  L V GLS   T R+L + FS  
Sbjct: 82  RSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKY 141

Query: 182 GTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARRRRGRT 241
           G + DV +V D  +R SRGF F+   + D+A+   +  N   L+GR I V+ +  +R  T
Sbjct: 142 GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201

Query: 242 PTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHSPNQHGRSY 301
           PTPG Y+G R  +   R R Y  R            +   Y      SRS+   + G   
Sbjct: 202 PTPGIYMG-RPTYGSSRRRDYYDR-----------GYDRGYDDRDYYSRSY---RGGGGG 261

Query: 302 GSPYR-YRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 316
           G  +R  +      RRR  SPYY        SR  YRS  R R RSYSP  Y
Sbjct: 262 GGGWRAAQDRDQIYRRRSPSPYY--------SRGGYRS--RSRSRSYSPRRY 288

[Close]

BLAST of Spg005814.1 vs. ExPASy Swiss-Prot
Match: P62995 (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-11
Identity = 103/292 (35.27%), Postives = 124/292 (42.47%), Query Frame = 0


Query: 62  SAPGCPVSTWFNPNRLRKMSYSRRSR---YSRSPS-----------YKRSVSRSLSRSRS 121
           SA G   S    P R R    SRRSR    SRS S           Y RS SRS S  RS
Sbjct: 22  SAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRS 81

Query: 122 RSRSPSSDVE---------------------NPGNN--LYVTGLSPRITRRELEKHFSAE 181
           RSRS S D                       NP  N  L V GLS   T R+L + FS  
Sbjct: 82  RSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKY 141

Query: 182 GTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARRRRGRT 241
           G + DV +V D  +R SRGF F+   + D+A+   +  N   L+GR I V+ +  +R  T
Sbjct: 142 GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201

Query: 242 PTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHSPNQHGRSY 301
           PTPG Y+G R  +   R R Y  R            +   Y      SRS+   + G   
Sbjct: 202 PTPGIYMG-RPTYGSSRRRDYYDR-----------GYDRGYDDRDYYSRSY---RGGGGG 261

Query: 302 GSPYR-YRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 316
           G  +R  +      RRR  SPYY        SR  YRS  R R RSYSP  Y
Sbjct: 262 GGGWRAAQDRDQIYRRRSPSPYY--------SRGGYRS--RSRSRSYSPRRY 288

[Close]

BLAST of Spg005814.1 vs. ExPASy Swiss-Prot
Match: P62996 (Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-11
Identity = 103/292 (35.27%), Postives = 124/292 (42.47%), Query Frame = 0


Query: 62  SAPGCPVSTWFNPNRLRKMSYSRRSR---YSRSPS-----------YKRSVSRSLSRSRS 121
           SA G   S    P R R    SRRSR    SRS S           Y RS SRS S  RS
Sbjct: 22  SAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRS 81

Query: 122 RSRSPSSDVE---------------------NPGNN--LYVTGLSPRITRRELEKHFSAE 181
           RSRS S D                       NP  N  L V GLS   T R+L + FS  
Sbjct: 82  RSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKY 141

Query: 182 GTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARRRRGRT 241
           G + DV +V D  +R SRGF F+   + D+A+   +  N   L+GR I V+ +  +R  T
Sbjct: 142 GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHT 201

Query: 242 PTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHSPNQHGRSY 301
           PTPG Y+G R  +   R R Y  R            +   Y      SRS+   + G   
Sbjct: 202 PTPGIYMG-RPTYGSSRRRDYYDR-----------GYDRGYDDRDYYSRSY---RGGGGG 261

Query: 302 GSPYR-YRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 316
           G  +R  +      RRR  SPYY        SR  YRS  R R RSYSP  Y
Sbjct: 262 GGGWRAAQDRDQIYRRRSPSPYY--------SRGGYRS--RSRSRSYSPRRY 288

[Close]

BLAST of Spg005814.1 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 4.8e-143
Identity = 315/376 (83.78%), Postives = 328/376 (87.23%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHL+ADP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY RSSS S+HYSS+RSRSRS S N
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 260 QHGRSYGSPYRYRSY--------SPYSRRRYDSP-YYRHHRSYSRSRSPYRSPARRRDRS 319
           +H RSYGSPY  RSY        SPY RRRYDSP YYRHHRSYSRS SPYR  +  RDRS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWS--RDRS 240

Query: 320 YSPYDYYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWES 379
           YSPYDYYSPDPYYRRHRYRSVSRS+SPK+R + R YSRSYSP PRRRTLR+ S SPS ES
Sbjct: 241 YSPYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPSRES 300

Query: 380 RRSYSRSTSPERSRRSGS--YSRSVSPE-PRSSRSRSRSHTPRRHDYKLYRPQKRGYSGG 439
           RRSYSRS SPERSRRSGS  YS S+SPE  RS RSRS SHTPRRH+      +KRGYS  
Sbjct: 301 RRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHE----STRKRGYSSR 360

Query: 440 SRSRSQSVVSRSVSPA 443
           SRSRSQSV SRSVSPA
Sbjct: 361 SRSRSQSVTSRSVSPA 369

[Close]

BLAST of Spg005814.1 vs. ExPASy TrEMBL
Match: A0A6J1D9V3 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 2.5e-139
Identity = 313/379 (82.59%), Postives = 324/379 (85.49%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEK
Sbjct: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCIKYLNRSVLEGRIITVEKARR
Sbjct: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKARR 121

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPY RSSS SS YSSERSRSRSHSP 
Sbjct: 122 RRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSHSPY 181

Query: 260 QHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSR--SRSPY-RSPARRRDRSYSP-YD 319
           +H RSYGSPY +RSYSPYSRRRYDSPYYR HRSYSR  SRSPY RSP RR DRSYS  YD
Sbjct: 182 RHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSSYYD 241

Query: 320 YYSPDP-YYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWE----- 379
           YYS D  YYRRHRYRSVSRSVSPKARIS R YSRSYSPRP RRTLRS SRSPS       
Sbjct: 242 YYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRIYSR 301

Query: 380 ----SRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQ-KRGY 439
                 RSYSRS SPERS+RSGSY    S   R SRSRSRSHT RRH +K+Y    KR Y
Sbjct: 302 SPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR-SRSRSRSHTFRRHSHKVYENSGKREY 361

Query: 440 SGGSRSRSQSVVSRSVSPA 443
           SG SRSRS+SVVSRSVSPA
Sbjct: 362 SGXSRSRSRSVVSRSVSPA 378

[Close]

BLAST of Spg005814.1 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 4.6e-138
Identity = 304/365 (83.29%), Postives = 313/365 (85.75%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHLV DPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S SS+YSS+RSRSRSHSPN
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 260 QHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-YRSPARRRDRSYSPYDYYS 319
           +  RS  SPYRYRSYSPYSRRRYDSPYYR HRSYSRS SP  RSP RRRDRSYSPYDY S
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSPYDYCS 240

Query: 320 PDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYSRST 379
           PD YYRRHR RSVSRSVSPKAR+SSRRYS SYSPR RR   RS SRS      RSYSRS 
Sbjct: 241 PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYSRSL 300

Query: 380 SPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSVVSR 439
           SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       ++ GYSGG    S SV SR
Sbjct: 301 SPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH-------KRGGYSGG----SGSVASR 348

Query: 440 SVSPA 443
           SVSPA
Sbjct: 361 SVSPA 348

[Close]

BLAST of Spg005814.1 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 8.8e-137
Identity = 302/365 (82.74%), Postives = 311/365 (85.21%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHLV DPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S SS+YSS+RSRSRSHSPN
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 260 QHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-YRSPARRRDRSYSPYDYYS 319
           +  RS  SPYRYRSYSPYSRRRYDSPYYR HRSYSRS SP  R P RR DRSYSPYDY S
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYDYCS 240

Query: 320 PDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTLRSCSRSPSWESRRSYSRST 379
           PD YYRRHR RSVSRSVSPKAR+SSRRYS SYSPR RR   RS SRS      RSYSRS 
Sbjct: 241 PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYSRSL 300

Query: 380 SPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRPQKRGYSGGSRSRSQSVVSR 439
           SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       ++ GYSGG    S SV SR
Sbjct: 301 SPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH-------KRGGYSGG----SGSVASR 348

Query: 440 SVSPA 443
           SVSPA
Sbjct: 361 SVSPA 348

[Close]

BLAST of Spg005814.1 vs. ExPASy TrEMBL
Match: A0A6J1GBG9 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 7.4e-136
Identity = 304/384 (79.17%), Postives = 313/384 (81.51%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 199
           HFSAEGTVLDVHLV DPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 200 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPY-RSSSHSSHYSSERSRSRSHSPN 259
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S SS+YSS+RSRSRSHSPN
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 260 QHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSP-------------------- 319
           +  RS  SPYRYRSYSPYSRRRYDSPYYR HRSYSRS SP                    
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPC 240

Query: 320 YRSPARRRDRSYSPYDYYSPDPYYRRHRYRSVSRSVSPKARISSRRYSRSYSPRPRRRTL 379
            RSP RRRDRSYSPYDY SPD YYRRHR RSVSRSVSPKAR+SSRRYS SYSPR RR   
Sbjct: 241 SRSPTRRRDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSAS 300

Query: 380 RSCSRSPSWESRRSYSRSTSPERSRRSGSYSRSVSPEPRSSRSRSRSHTPRRHDYKLYRP 439
           RS SRS      RSYSRS SPERSRR  S+S S+SPE RSSRSRSRSHTPR H       
Sbjct: 301 RSHSRS------RSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHH------- 360

Query: 440 QKRGYSGGSRSRSQSVVSRSVSPA 443
           ++ GYSGG    S SV SRSVSPA
Sbjct: 361 KRGGYSGG----SGSVASRSVSPA 367

[Close]

BLAST of Spg005814.1 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 239.6 bits (610), Expect = 4.8e-63
Identity = 214/390 (54.87%), Postives = 238/390 (61.03%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 139
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 140 LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 199
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 200 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRSHS 259
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S  RS S+SS       R RS+S
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSS------DRGRSYS 210

Query: 260 PNQHGRSYGSPYRYRSYSP-YSRRRYDSPYYRHHRSYSRSRSPYRSPARRRDRSYSPYDY 319
           P     SYG   R  SYSP Y RRR+ SP        SRS SP     RRRDRSYSPY  
Sbjct: 211 P-----SYGRRGRSSSYSPFYRRRRFYSP--------SRSPSPDDRYNRRRDRSYSPY-- 270

Query: 320 YSPDPYYRRHRYRSVSRSVSPKAR--ISSRRY---SRSYSPRPRRRTLRSCSRSPSWESR 379
                Y RR R RS SR+   + R     RRY   SRSYSPR R R  RSC  SP +  R
Sbjct: 271 -----YRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRARD-RSC--SPYYRGR 330

Query: 380 -RSYS-------RSTSPERS--RRSGSYSRSVSP---------EPRSSRSRSRSHTPRRH 439
            RSYS       RS SPE    RR  S S SVSP          PR  R  SRS + RRH
Sbjct: 331 DRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-RRH 382

Query: 440 DYKLYRPQKRGYSGGSRSRSQSVVSRSVSP 442
           D    R     +S  +RS +    SRSVSP
Sbjct: 391 D----RQSSMCHSRSARSST----SRSVSP 382

[Close]

BLAST of Spg005814.1 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-37
Identity = 117/231 (50.65%), Postives = 134/231 (58.01%), Query Frame = 0


Query: 75  NRLRKMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITR 134
           +R R  S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T 
Sbjct: 25  SRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTD 84

Query: 135 RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITV 194
           ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITV
Sbjct: 85  KDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITV 144

Query: 195 EKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSRS 254
           E++RR+R RTPTPG YLGL++   R   R   S R   Y           Y   RS  R 
Sbjct: 145 ERSRRKRPRTPTPGHYLGLKS--SRDSDREGRSSRGRHYD-------RDDYRDRRSPRRD 204

Query: 255 HSPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARR 306
           +SP    RS     R RSYSP+ R    SP  R  R   RS   Y     R
Sbjct: 205 YSPRDERRS----RRDRSYSPHGR----SPERRSERRSERSERRYEPRGSR 238

[Close]

BLAST of Spg005814.1 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-36
Identity = 117/232 (50.43%), Postives = 134/232 (57.76%), Query Frame = 0


Query: 75  NRLRKMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRIT 134
           +R R  S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T
Sbjct: 25  SRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVT 84

Query: 135 RRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIIT 194
            ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR IT
Sbjct: 85  DKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYIT 144

Query: 195 VEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRSSSHSSHYSSERSRSR 254
           VE++RR+R RTPTPG YLGL++   R   R   S R   Y           Y   RS  R
Sbjct: 145 VERSRRKRPRTPTPGHYLGLKS--SRDSDREGRSSRGRHYD-------RDDYRDRRSPRR 204

Query: 255 SHSPNQHGRSYGSPYRYRSYSPYSRRRYDSPYYRHHRSYSRSRSPYRSPARR 306
            +SP    RS     R RSYSP+ R    SP  R  R   RS   Y     R
Sbjct: 205 DYSPRDERRS----RRDRSYSPHGR----SPERRSERRSERSERRYEPRGSR 239

[Close]

BLAST of Spg005814.1 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.8 bits (377), Expect = 5.1e-36
Identity = 83/120 (69.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 139
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 140 LEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK 197
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of Spg005814.1 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-29
Identity = 76/123 (61.79%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 75  NRLRKMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRIT 134
           +R R  S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T
Sbjct: 25  SRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVT 84

Query: 135 RRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIIT 194
            ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR IT
Sbjct: 85  DKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYIT 144

Query: 195 VEK 197
           VE+
Sbjct: 145 VER 147

The following BLAST results are available for this feature:

BLAST of Spg005814.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457405.1	9.9e-143	83.78	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
XP_038894517.1	1.3e-142	85.83	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]
XP_022150940.1	5.1e-139	82.59	serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia]	[more]
KAG6607292.1	1.9e-138	82.79	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]
XP_022948994.1	9.6e-138	83.29	serine/arginine-rich splicing factor SR45a-like isoform X5 [Cucurbita moschata]	[more]

BLAST of Spg005814.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	6.8e-62	54.87	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	1.7e-12	33.49	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q3ZBT6	3.2e-11	35.27	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]
P62995	3.2e-11	35.27	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1	[more]
P62996	3.2e-11	35.27	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1	[more]

BLAST of Spg005814.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C508	4.8e-143	83.78	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1D9V3	2.5e-139	82.59	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charanti...	[more]
A0A6J1GBJ2	4.6e-138	83.29	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]
A0A6J1GAS3	8.8e-137	82.74	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]
A0A6J1GBG9	7.4e-136	79.17	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]

BLAST of Spg005814.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	4.8e-63	54.87	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	1.2e-37	50.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	3.0e-36	50.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	5.1e-36	69.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	1.2e-29	61.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 122..195 e-value: 1.1E-20 score: 84.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 123..192 e-value: 2.2E-14 score: 53.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 121..199 score: 17.097071
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 73..205 e-value: 3.3E-27 score: 97.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 360..396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 424..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..442
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 87..335
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 87..335
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 110..225

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg005814	Spg005814	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg005814.1-cds	Spg005814.1-cds-scaffold11:1345321..1345557	CDS
Spg005814.1-cds	Spg005814.1-cds-scaffold11:1347055..1347146	CDS
Spg005814.1-cds	Spg005814.1-cds-scaffold11:1347248..1347356	CDS
Spg005814.1-cds	Spg005814.1-cds-scaffold11:1347479..1347628	CDS
Spg005814.1-cds	Spg005814.1-cds-scaffold11:1348028..1348091	CDS
Spg005814.1-cds	Spg005814.1-cds-scaffold11:1348170..1348846	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg005814.1-three_prime_utr	Spg005814.1-three_prime_utr-scaffold11:1348847..1349068	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg005814.1	Spg005814.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding