Spg003726.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg003726.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Dynein light chain
Location	scaffold4: 47770607 .. 47772976 (+)
Sequence length	594
RNA-Seq Expression	Spg003726.1
Synteny	Spg003726.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCATGGCTGCTGCCCTAAACAAGCAAATGAAAGGATTCAAATCCTTTTACAAGTCCCGCGACGGAGCTCGCAATGTACAGGCATGCGATCTTGCTTCAGTGAGTTCAGTGGATAAAGTACCTGTTTATAAGTATAACTGGTTGGGTAGGAAATCTAAGAAAGTAATCGATCGGCATGGCGGGAGGAGAGGAGTGGAGGATGGTGGCGGTGGCTGTGGCGGCGGGGAAGGAATGGTGGGGAGAAAACTGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGCATCAGTGGCTGCATTTCTTCAAGTGAAGGTATTGGTATCAGATATGCCTGAGATGATGCAAATTCAGGCTTTCAGGTCAGCAAGGAGGAGTTATGACAGCTTGGAGAAGTTCAGCTCAAAACACATGGCTTACAATATTAAAAAGGTATTGTTCCATTGGCAAGTTTTTGTTTTGTCTTTTTGGTTCTTTGAATCAATTCTCTTTCCTCTTTGGCCTCATATTGTAGTAAACAGAACAGATATATTAGGAACAAATCACTAATGGGGTTTCACAAAATGAGAAACTTCAGTCAAATTCTCACTTTTTGCTAACAGTACTTTTCCTTTTCCTTTTTGGGCGTTGGGAATTTCATATTGATCTGGTTTGAGGAAATGCTCAACAGAAAGGCAGAGCAGAAGGCCCCTTGATTTGTTACTTTTTGGTCATATTCAGAAAAAACAATCAATGGAAAATGGGAAATCATAACATTTCTAGTTCTCTTTGGGTCCATCACACCGGCCAAAATGAGCAAAGCTCAGCTGTAATTGGCATGTACTCTAGACCAAGAGGTCGGATGTTTAGGGTTCGGATGTTCGAACTCTGTCTTTCTGTGGTCCATGTTTCTGATCAGTGAGACAGTTGTTCAAACACTAAATTTGAGAATTATATTATCTAAAATTTTCAGACAGAATTTCAAGTGGGCATTTGGTCAAGGATCCGACAACCCATGTGTTTAGATCAGTAATACATAGTGATTAGCACATATTTTAAGCTAACAATCTGATATTTCATTCAATTGGAGCTCCCTTCCTTTTCCTTGCAATCCATGTGCTTTACTTGATTGCTTAGTGTAGTGTTAATTTCCCCAACCATTTTAATAGAATTTCACTTAGTACTAAATTAGTATGAATCAGATTGGTTGTAAGATTTTGAGAACAAGATTGGTAGAGAACAAAAAAGGATAAATTGCAAGTTTAGTCTATAAATTTTATGTTTGTATCTAATAAGTCCTTCAATTTTCAATTTTGTGCCTAATAAATCCTAAACTTTCAATTTAATTTCTAATAGATCATTAAGGTCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGAAAATTAAGCTTATACACACATACTTCCACCTATAAGTTTTTTGGTTTTAGTATCACTCTTCTACCTTGTTTTCAAAAACCAAGTTCAATTTTGAAAACAAAAAAAAAATAGTTTTCGAAAACTTGTTTTTGTTTTTAAAATTTGGCTAGGAATTCAAATGGAACCTTAACTAAGATGAAAGCCATGGTAGGGAAATTTAGGAGAAAACAAGCATAATTTTCAAAAATAAAAAACAAAAAACTAAATGGTTATCAAACGGGGCCTAAACTTTCAATTTTATGTCTAAAAGGTCCTTGATCTATTTCATTTTAAAAAAACATCGAATATGTCAAACACTTATTAGATACAAAATAAAAAATTCAGACCTATTAGATATTTTTAAAGTTTAATGACTGAACTAGTAATTTAAATTTTTAAAAAAGGGTAATGATGTAATTTCACATCATGAAAAACCTATTAATGTACTTTGTAGCAAAGATGGGATATAAAGTCTTTGCTACCTCATACTTTTAGACTATTCTTGTCAAAAAGCCAAAAAAATATGACAAGACCCAAAAATTATCTGATAGAATAACTTTTAAAGAAAAAGAAAACTTTGGAAAACAAAACCAATATTTAATAAATATTTTCCTTGATATACCTCCATTTTTTTATAAATGGATTTATACTAATTAAATTGGGGCCTAATGCAGGAGTTTGATAAAGTGCATGGACCAGCCTGGCATTGTATTGTGGGCTCAAGTTTTGGGTCATTTGTGACACACTCAACAGGTTGCTTCCTTTATTTTTCAATGGAGAAATTATACATTTTGTTGTTTAGAACTAAGATTCAGAAAGCTACTGAATGACTTCATACAATGAACCTATGTAAAGGCATTTTATCATTTATACAAAAGCAATTTGTTCTTATTGTTGTTTCCCTCCCCTATTTACTGTAATTCAAAAGAGAAGTTAGGCCAACTTTTTGTTGGATGAATATA

mRNA sequence

ATGGCTGCTGCCCTAAACAAGCAAATGAAAGGATTCAAATCCTTTTACAAGTCCCGCGACGGAGCTCGCAATGTACAGGCATGCGATCTTGCTTCAGTGAGTTCAGTGGATAAAGTACCTGTTTATAAGTATAACTGGTTGGGTAGGAAATCTAAGAAAGTAATCGATCGGCATGGCGGGAGGAGAGGAGTGGAGGATGGTGGCGGTGGCTGTGGCGGCGGGGAAGGAATGGTGGGGAGAAAACTGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGCATCAGTGGCTGCATTTCTTCAAGTGAAGGTATTGGTATCAGATATGCCTGAGATGATGCAAATTCAGGCTTTCAGGTCAGCAAGGAGGAGTTATGACAGCTTGGAGAAGTTCAGCTCAAAACACATGGCTTACAATATTAAAAAGGAGTTTGATAAAGTGCATGGACCAGCCTGGCATTGTATTGTGGGCTCAAGTTTTGGGTCATTTGTGACACACTCAACAGGTTGCTTCCTTTATTTTTCAATGGAGAAATTATACATTTTGTTGTTTAGAACTAAGATTCAGAAAGCTACTGAATGA

Coding sequence (CDS)

ATGGCTGCTGCCCTAAACAAGCAAATGAAAGGATTCAAATCCTTTTACAAGTCCCGCGACGGAGCTCGCAATGTACAGGCATGCGATCTTGCTTCAGTGAGTTCAGTGGATAAAGTACCTGTTTATAAGTATAACTGGTTGGGTAGGAAATCTAAGAAAGTAATCGATCGGCATGGCGGGAGGAGAGGAGTGGAGGATGGTGGCGGTGGCTGTGGCGGCGGGGAAGGAATGGTGGGGAGAAAACTGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGCATCAGTGGCTGCATTTCTTCAAGTGAAGGTATTGGTATCAGATATGCCTGAGATGATGCAAATTCAGGCTTTCAGGTCAGCAAGGAGGAGTTATGACAGCTTGGAGAAGTTCAGCTCAAAACACATGGCTTACAATATTAAAAAGGAGTTTGATAAAGTGCATGGACCAGCCTGGCATTGTATTGTGGGCTCAAGTTTTGGGTCATTTGTGACACACTCAACAGGTTGCTTCCTTTATTTTTCAATGGAGAAATTATACATTTTGTTGTTTAGAACTAAGATTCAGAAAGCTACTGAATGA

Protein sequence

MAAALNKQMKGFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGRRGVEDGGGGCGGGEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQAFRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILLFRTKIQKATE

Homology

[Close]

BLAST of Spg003726.1 vs. NCBI nr
Match: XP_022143180.1 (uncharacterized protein LOC111013113 [Momordica charantia])

HSP 1 Score: 327.4 bits (838), Expect = 8.5e-86
Identity = 171/196 (87.24%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 3   AALNKQMKGFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGRR 62
           A LNKQ+KGFKSFYKSRDGAR+  A D A    +D+VPVYKYNWLGRKSKK  D+HGGRR
Sbjct: 2   ATLNKQIKGFKSFYKSRDGARDTAAFDPA---PLDRVPVYKYNWLGRKSKKATDQHGGRR 61

Query: 63  GVEDGGGGCGGGEGMVGRK-LVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQA 122
           G+E GGGG  GGEGM GRK LVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQ+QA
Sbjct: 62  GMEGGGGGGDGGEGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQA 121

Query: 123 FRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 182
           FRSARRSYDSLEKFSSKHMA++IKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 122 FRSARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 181

Query: 183 KLYILLFRTKIQKATE 198
           KLYILLFRTKIQKATE
Sbjct: 182 KLYILLFRTKIQKATE 194

[Close]

BLAST of Spg003726.1 vs. NCBI nr
Match: XP_023538230.1 (uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 166/197 (84.26%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 3   AALNKQMK-GFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGR 62
           A LNKQMK GFKSFYKSRDGAR+VQAC+     SVDKV VYKYNWLGRKSKKV+ +HGG 
Sbjct: 2   ATLNKQMKGGFKSFYKSRDGARDVQACESV---SVDKVSVYKYNWLGRKSKKVVHQHGGS 61

Query: 63  RGVEDGG-GGCGGGEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQ 122
           RG + GG G  GGG G  GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQIQ
Sbjct: 62  RGAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 121

Query: 123 AFRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 182
           AFR ARRSYDSLEK SSK MAYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 122 AFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 181

Query: 183 EKLYILLFRTKIQKATE 198
           E+LYILLFRTKIQKATE
Sbjct: 182 EELYILLFRTKIQKATE 195

[Close]

BLAST of Spg003726.1 vs. NCBI nr
Match: XP_031736570.1 (uncharacterized protein LOC101208065 [Cucumis sativus] >KAE8651528.1 hypothetical protein Csa_019270 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 163/197 (82.74%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 3   AALNKQMKGFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGRR 62
           A LNKQMKGFKSFYKSRDG RNV + +  S+SSVDK  +YKYNWLGRKSKK  ++HGG  
Sbjct: 2   ATLNKQMKGFKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGGGG 61

Query: 63  GVEDGGGGCGG--GEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQ 122
           G   GGGG GG   E M GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPE+MQIQ
Sbjct: 62  GGGGGGGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQ 121

Query: 123 AFRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 182
           AFR+ARRSYDSLEKFSSKHMAYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 122 AFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSM 181

Query: 183 EKLYILLFRTKIQKATE 198
           EKLYILLFRTKIQKA E
Sbjct: 182 EKLYILLFRTKIQKAIE 198

[Close]

BLAST of Spg003726.1 vs. NCBI nr
Match: KAG7021256.1 (hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.5 bits (789), Expect = 4.1e-80
Identity = 164/196 (83.67%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 3   AALNKQMK-GFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGR 62
           A LNKQMK GFKSFYKSRDGA NVQAC+     SVDK  VYKYNWLGRKSKKV+ +HGG 
Sbjct: 2   ATLNKQMKGGFKSFYKSRDGACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGGS 61

Query: 63  RGVEDGGGGCGGGEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQA 122
           RG + GG G G G G  GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQIQA
Sbjct: 62  RGAKGGGDGDGSG-GTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQA 121

Query: 123 FRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 182
           FR ARRSYDSLEK SSK MAYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 122 FRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 181

Query: 183 KLYILLFRTKIQKATE 198
           +LYILLFRTKIQKATE
Sbjct: 182 ELYILLFRTKIQKATE 193

[Close]

BLAST of Spg003726.1 vs. NCBI nr
Match: XP_022938230.1 (uncharacterized protein LOC111444374 [Cucurbita moschata])

HSP 1 Score: 308.5 bits (789), Expect = 4.1e-80
Identity = 164/196 (83.67%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 3   AALNKQMK-GFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGR 62
           A LNKQMK GFKSFYKSRDGA NVQAC+     SVDK  VYKYNWLGRKSKKV+ +HGG 
Sbjct: 11  ATLNKQMKGGFKSFYKSRDGACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGGS 70

Query: 63  RGVEDGGGGCGGGEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQA 122
           RG + GG G G G G  GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQIQA
Sbjct: 71  RGAKGGGDGDGSG-GTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQA 130

Query: 123 FRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 182
           FR ARRSYDSLEK SSK MAYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 131 FRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 190

Query: 183 KLYILLFRTKIQKATE 198
           +LYILLFRTKIQKATE
Sbjct: 191 ELYILLFRTKIQKATE 202

[Close]

BLAST of Spg003726.1 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-13
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 111 SDMPEMMQIQAFRSARRSYDSLEKFS-SKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 170
           +DMPE MQ  A   A +   +LEKF+  K +A  IKKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 171 HSTGCFLYFSMEKLYILLFRT 191
           H T  F+YF + ++ +LLF++
Sbjct: 71  HETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of Spg003726.1 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.9e-13
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 106 VKVLVSDMPEMMQIQAFRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFG 165
           + V  +DMP+ MQ  A     ++++  E    + +A  IKKEFDK + P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 166 SFVTHSTGCFLYFSMEKLYILLFR 190
           SFVTH T  F+YF++ K  +LLF+
Sbjct: 68  SFVTHETKNFIYFNINKHSVLLFK 89

[Close]

BLAST of Spg003726.1 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-12
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 111 SDMPEMMQIQAFRSARRSYDSLEKFS-SKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 170
           +DM E MQ  A   A +   +LEK++  K +A  IKKEFD+ H P WHCIVG +FGS+VT
Sbjct: 13  ADMSEEMQADAVDCATQ---ALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVT 72

Query: 171 HSTGCFLYFSMEKLYILLFRT 191
           H T  F+YF + ++ ILLF++
Sbjct: 73  HETKHFIYFYLGQVAILLFKS 90

[Close]

BLAST of Spg003726.1 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.9e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 111 SDMPEMMQIQAFRSARRSYDSLEKFS-SKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 170
           +DM E MQ  +   A +   +LEK++  K +A +IKKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 171 HSTGCFLYFSMEKLYILLFRT 191
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Spg003726.1 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.9e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 111 SDMPEMMQIQAFRSARRSYDSLEKFS-SKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 170
           +DM E MQ  +   A +   +LEK++  K +A +IKKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 171 HSTGCFLYFSMEKLYILLFRT 191
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Spg003726.1 vs. ExPASy TrEMBL
Match: A0A6J1CN34 (uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013113 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.1e-86
Identity = 171/196 (87.24%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 3   AALNKQMKGFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGRR 62
           A LNKQ+KGFKSFYKSRDGAR+  A D A    +D+VPVYKYNWLGRKSKK  D+HGGRR
Sbjct: 2   ATLNKQIKGFKSFYKSRDGARDTAAFDPA---PLDRVPVYKYNWLGRKSKKATDQHGGRR 61

Query: 63  GVEDGGGGCGGGEGMVGRK-LVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQA 122
           G+E GGGG  GGEGM GRK LVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQ+QA
Sbjct: 62  GMEGGGGGGDGGEGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQA 121

Query: 123 FRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 182
           FRSARRSYDSLEKFSSKHMA++IKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 122 FRSARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 181

Query: 183 KLYILLFRTKIQKATE 198
           KLYILLFRTKIQKATE
Sbjct: 182 KLYILLFRTKIQKATE 194

[Close]

BLAST of Spg003726.1 vs. ExPASy TrEMBL
Match: A0A6J1FJ58 (uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC111444374 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.0e-80
Identity = 164/196 (83.67%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 3   AALNKQMK-GFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGR 62
           A LNKQMK GFKSFYKSRDGA NVQAC+     SVDK  VYKYNWLGRKSKKV+ +HGG 
Sbjct: 11  ATLNKQMKGGFKSFYKSRDGACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGGS 70

Query: 63  RGVEDGGGGCGGGEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQA 122
           RG + GG G G G G  GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQIQA
Sbjct: 71  RGAKGGGDGDGSG-GTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQA 130

Query: 123 FRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 182
           FR ARRSYDSLEK SSK MAYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 131 FRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 190

Query: 183 KLYILLFRTKIQKATE 198
           +LYILLFRTKIQKATE
Sbjct: 191 ELYILLFRTKIQKATE 202

[Close]

BLAST of Spg003726.1 vs. ExPASy TrEMBL
Match: A0A0A0LKY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.6e-80
Identity = 162/197 (82.23%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 3   AALNKQMKGFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGRR 62
           A LNKQMKGFKSFYKSRDG RNV + +  S+SSVDK  +YKYNWLGRKSKK  ++HGG  
Sbjct: 2   ATLNKQMKGFKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGG-- 61

Query: 63  GVEDGGGGCGG--GEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQ 122
               GGGG GG   E M GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPE+MQIQ
Sbjct: 62  --GGGGGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQ 121

Query: 123 AFRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 182
           AFR+ARRSYDSLEKFSSKHMAYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 122 AFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSM 181

Query: 183 EKLYILLFRTKIQKATE 198
           EKLYILLFRTKIQKA E
Sbjct: 182 EKLYILLFRTKIQKAIE 194

[Close]

BLAST of Spg003726.1 vs. ExPASy TrEMBL
Match: A0A6J1HN27 (uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.4e-80
Identity = 163/194 (84.02%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 5   LNKQMK-GFKSFYKSRDGARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGRRG 64
           +NKQMK GFKSFYKSRDGA NVQAC+     SVDK  VYKYNWLGRKSKK + +HGG RG
Sbjct: 4   VNKQMKGGFKSFYKSRDGACNVQACESV---SVDKAYVYKYNWLGRKSKKAVHQHGGPRG 63

Query: 65  VEDGGGGCGGGEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQAFR 124
            + GGGG  GG G  GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQIQAFR
Sbjct: 64  AKGGGGGDEGG-GTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFR 123

Query: 125 SARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 184
            ARRSYDSLEKFSSK MAYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME+L
Sbjct: 124 CARRSYDSLEKFSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEEL 183

Query: 185 YILLFRTKIQKATE 198
           YILLFRTKIQKATE
Sbjct: 184 YILLFRTKIQKATE 193

[Close]

BLAST of Spg003726.1 vs. ExPASy TrEMBL
Match: A0A1S3C671 (uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.1e-78
Identity = 160/196 (81.63%), Postives = 169/196 (86.22%), Query Frame = 0


Query: 3   AALNKQMKGFKSFYKSRD-GARNVQACDLASVSSVDKVPVYKYNWLGRKSKKVIDRHGGR 62
           A LNKQMKGFKSFYKSRD G RNV + +  S SSVDK  +YKYNWLGRKSKK  D+H G 
Sbjct: 2   ATLNKQMKGFKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQHSG- 61

Query: 63  RGVEDGGGGCGGGEGMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQA 122
                GG G  G E M GRK+VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPE+MQIQA
Sbjct: 62  ----GGGAGGIGEEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQA 121

Query: 123 FRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 182
           FR+ARRSYDSLEKFSSKHMAYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 122 FRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSME 181

Query: 183 KLYILLFRTKIQKATE 198
           KLYILLFRTKIQKA E
Sbjct: 182 KLYILLFRTKIQKAIE 192

[Close]

BLAST of Spg003726.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-40
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 85  EGRKSVSHVETNLA----SVAAFLQVKVLVSDMPEMMQIQAFRSARRSYDSLEKFSSKHM 144
           EGRKSVSHVE + A    + A  L V++L +DMP  MQ  AFR AR + DSLEKFSSKHM
Sbjct: 92  EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHM 151

Query: 145 AYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILLFRTKIQKAT 197
           A+N+KKEFDK +GPAWHCIVGSSFGSFVTHSTGCF+YFSM+KLY+LLF+TK++ A+
Sbjct: 152 AFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]

BLAST of Spg003726.1 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-20
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 106 VKVLVSDMPEMMQIQAFRSARRSYDSLE-KFSSKHMAYNIKKEFDKVHGPAWHCIVGSSF 165
           V+V  SDMP   Q +AF  +R   ++   K  +K +A+ +KK+FD  +GPAWHCIVG+SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 166 GSFVTHSTGCFLYFSMEKLYILLFRTKIQ 194
           GS+VTHSTG FLYF ++K+Y+LLF+T ++
Sbjct: 96  GSYVTHSTGGFLYFQIDKVYVLLFKTAVE 124

[Close]

BLAST of Spg003726.1 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 81.6 bits (200), Expect = 7.5e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 104 LQVKVLV--SDMPEMMQIQAFRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVG 163
           L+ K +V  SDMP  MQ+QA   A ++ D  + F  K +A +IKKEFD+ +G  W C+VG
Sbjct: 2   LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVG 61

Query: 164 SSFGSFVTHSTGCFLYFSMEKLYILLFR 190
           S+FG F THS G F+YF +E L  L+F+
Sbjct: 62  SNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Spg003726.1 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-15
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 105 QVKVLVSDMPEMMQIQAFRSARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSF 164
           + KV  +DMP  MQ+QA + A +S D  + F S  +A +IKKEFD+ +G  W C+VG++F
Sbjct: 5   KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

Query: 165 GSFVTHSTGCFLYFSMEKLYILLFR 190
           G F THS G F+YF +  L  L+F+
Sbjct: 65  GCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of Spg003726.1 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-15
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 76  GMVGRKLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQIQAFRSARRSYDSLEKF 135
           G   + ++ + R S+  VE   AS  A  +  +  +DM + MQ +A   A     + EK+
Sbjct: 13  GAPAQTILDDRRSSLPEVE---ASPPAGKRAVIKSADMKDDMQKEAIEIA---ISAFEKY 72

Query: 136 S-SKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILLFRT 191
           S  K +A NIKKEFDK HG  WHCIVG +FGS+VTH T  F+YF +++  +LLF++
Sbjct: 73  SVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS 122

The following BLAST results are available for this feature:

BLAST of Spg003726.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143180.1	8.5e-86	87.24	uncharacterized protein LOC111013113 [Momordica charantia]	[more]
XP_023538230.1	2.2e-81	84.26	uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo]	[more]
XP_031736570.1	2.2e-81	82.74	uncharacterized protein LOC101208065 [Cucumis sativus] >KAE8651528.1 hypothetica...	[more]
KAG7021256.1	4.1e-80	83.67	hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938230.1	4.1e-80	83.67	uncharacterized protein LOC111444374 [Cucurbita moschata]	[more]

BLAST of Spg003726.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	7.6e-13	50.62	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q86A88	9.9e-13	46.43	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
Q39580	2.2e-12	49.38	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
P61285	4.9e-12	48.15	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
P63167	4.9e-12	48.15	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]

BLAST of Spg003726.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN34	4.1e-86	87.24	uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1FJ58	2.0e-80	83.67	uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A0A0LKY0	2.6e-80	82.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1	[more]
A0A6J1HN27	4.4e-80	84.02	uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683...	[more]
A0A1S3C671	4.1e-78	81.63	uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=...	[more]

BLAST of Spg003726.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	2.0e-40	68.97	Dynein light chain type 1 family protein	[more]
AT1G23220.1	3.0e-20	51.69	Dynein light chain type 1 family protein	[more]
AT1G52240.2	7.5e-16	47.73	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	3.7e-15	45.88	Dynein light chain type 1 family protein	[more]
AT4G15930.1	8.3e-15	41.38	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 101..190 e-value: 2.1E-37 score: 140.3
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 106..190 e-value: 9.3E-30 score: 102.9
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 80..196
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 104..190 e-value: 5.8E-31 score: 108.5
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 104..190
None	No IPR available	PANTHER	PTHR11886:SF37	DYNEIN LIGHT CHAIN-LIKE PROTEIN	coord: 80..196

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg003726	Spg003726	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg003726.1-five_prime_utr	Spg003726.1-five_prime_utr-scaffold4:47770607..47770610	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg003726.1-cds	Spg003726.1-cds-scaffold4:47770611..47771048	CDS
Spg003726.1-cds	Spg003726.1-cds-scaffold4:47772689..47772844	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg003726.1-three_prime_utr	Spg003726.1-three_prime_utr-scaffold4:47772845..47772976	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg003726.1	Spg003726.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding