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Spg002394.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACCATCCAAAGATTGACGTATCGTTTGGGGGCAAAATAAATACAATATCTTCCTTGACGCCAGGCCCTTTAATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCATTTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCTTCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGGTAATGAGTTTTGGTTCCAATCGTTTCGTTTTCAGTGTTGTGGTTTTGATTTTTGAAGTTGGTTTGAAATGGATGCTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCTGTTGCTTTTTACAATATGATGTAAGCAGTTGATCTTTTTGTACGGATTCTTCTTGTGGGTGGTTTCATGACAGTGGAGTTTATGAGGTTGAATTCATATGGAGAGACTCAGAATCCTCATTTTCAAACTGACTTCTAATTGGATTTCTGGATTTTGTTTGCCCCTTTTTTTGTGTGCTTGTTTCTATGAGTTGATTTGAGTGCATGTTCATTATTTTGAAGAAATGGATGCTCATAGCTTCATTGAGGGTAGTGAAATCTCCTTTTTTCTCTTTTGAATCTTTTCAACTATTGGTCACTTGGATAGGACCTTGATCATCCTGACTTCTAATCAATTTGTTACTGGTCAGGTTTCAAGATCCCAGGCTAGAGAAAACTTGTGGAGTAGAGTTTCATAGTGGATGAGTAAATGAATTCAGCTCTCCTCAGAGGGTTGGCATCTAGTTCTGATGGAACTAGAAACACTGAGAAGCTATTGAAATCTTCTTCCTCTAATAATCGCATGCCTGAAGGCTTGCACTCAGGGAAGAAAATTCTTGATCCACAAGGGCCTTTTCTTCAAAGTTGGAACAAGATGTTTGTGCTGTCTTGTGTGATTGCTGTATCGTTGGATCCTCTGTTCTTTTATGTTCCTGTGATTGATAATAGAAGGAAGTGTCTTAGGTTAGATGAGAAAGTGGAGACTGTAGTCTGTATATTGCGATTATTTACAGACTTATTCTATGTTGTGCATATTGTTTTTCAGTTTCGTACAGGATTTATTGCTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATTATCGGGCGATAGCAATGAGGTATCTGTCATCATACTTTCTAATTGACATTTCTTCAGTCCTCCCACTTCCACAGGTGAGGAAAGCTTCTTGGGACTTGAGAGTATGTCTGCTCTACTGTCAATTTGCTATCAGCTTTTGCTAAGGGGATTCTTCATTCATGCATCTGTTTGATTCAATCCTTTCACTCTCACTTTCTTGAAATGGTTTGAACAAATTGTCAGTTCCTTGTTTTCCAATGTCAATTCCATTGATTCAGCATCAATTGATTATTACTTCTATATGCTTTTTGGAAATTTCCACCCGAGCTACTTTGAAATATTTTTTGGGTTATTTCCTTGTAATATCTGCATGATATGGAGATGCAGTCAGTAATATGTACTCTGTTATGATTAATCTTGCAACGAACAAATTTTTTAGTAGGAGTTAAAATGTGATGGCTAGCCTGAAAATTATTTCACAGGTATTTGAGAACTGCAAGAAATTCAATTTCCTTTTAGACTTAGTTCTTTGTAGACAATAAGTTTATATTGCAAAGTTAGGTTCTACTTATTTCATGGTTGCCAGTGCAACGTTCTGCTCTTTAATGCATAAAAAAGCCCCATTTCCTGGTAGCCAGGACTTTCAATTTTGAAATGTTTTTATGATATTCGTCTTCAGATTTACATACTACAATAGTAACACAAACCATATTTGTAATCCCTGTGGGATTATTTCAACCTGAGTGAAGCAATGCTGGACTGTGAGCTTGATACCCTCAATTGTTTGAAGGATTGGTTCAACTCATGTTGAGGTTGAAAAAGATTATGATCAACTATTATTTCTCAAGTTCATTTGATTTTGATATGTGAATTGTCCTGCTTTTTTGTAATGTGCCTAGGTGGTGATTCTGATAATCGTCCCTGTAATGGGAAGTTCGAGACCGTCGATTACGAAGGACTTGCTGAAATTTGCTGTATTATGTCAACTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTATAAAGAAGTTACAAGGACCTCGGGCATACTCATCGAAACTGCTTGGGCAGGAGCTGCATTTAATCTATTGCTGTACATGCTAGCCGGTCATGTTAGTTTTCTTCTATGCTTCTTAGGAGGAAGCAGGATTTTAATTCAAAGTGCCTAGTCATTTTTATCAACTCTTGCTGTACATTGATGACTTGGTTGGTTTTTTCTTGTAGTGACATTTTCCTTTTCTCTTACATGTCTTGCCATTCTTAGATATTTGGAGCAACCTGGTACTTATGTTCCATAGAACGAGAAGCCCAGTGCTGGCACGATGCTTGTAGCAAGCATCCTGGCTGTAACTCTACTTCCTTGCACTGTGATTACAATTCCAGTGTTGGAGGGAACCTATTCCTCAATGTTTCTTGCCCAATTGAAAAGCCAAATGTAGGACATTTTAACTTCGGAATATTCCTTCAAGCCCTTCGATCTGATATTGTGGAGTCAGATTTTCCGAAGAAGTTCCTTCACTGCTTTTGGTGGGGCTTAAGGAATCTAAGGTATACTGTTCACTGTTCTTTTGGGATATTCTTTCTGATTGAGAGATCTGCTATAAATTTATGAGCATCCTTGTGAAAAAGTGTTTTTATATTCATAATTATGTGGTTCCTGTTGCTTTCTCTGTATATTTGTTGAGTTGAAGCAGTTCCTACACATATCATTCTGCATACGACCTAGTCCACTGCAGGCCGCCCCGAGTTTTATACAATTCTGTGCTTGTCTAAGCTGCTCTTAATTTAATTGGCTTAAAACCACAGTTCTATTGGTCATGTATATTGTTCACTTGCAAATATTTGTATAAGAGCTACACGGTTCTGAACATGTAATATGGTTTCAGTCGGATAAAACTTATGCTAAATGATTAGAGCTCACAGAAAGATTTGCTTAATTTAATACGTTGCTTGAGACATTGTGCATAAATTTGAGTCCTCTGGCACACGTCCTCGGCTACAAGAATACTGAATGCGTGGTGTAATAATGATACTCTCTGCAGTATTTTGTTACTTCAGCTAGACTAGTTATAATCCATTCACCTCTAGAATTTGTATGATGTTGAACATTTTGCCATTGAGTATTGAAGTAGTTTTCTGCATACATGTACTCTCTTGGATGCAGTTCTTTGGGTCAAAATCTCACTACAAGTACTTGCACATGGGAAAACTGCTTCGCCATTTTGGTTTGCATCTCTGGCTTAGTGTTGTTTGCGTCTCTCCTAGGCAACGTCCAGGTTGGTACTCGTTATTCTTGTTGCTGTTACGGCATGTTTGGTAGTGATTTTGGCCAAACATGCCCTTAGTCATCTTTCTTAGGCTGGCATAGAATCACTTTCCTTTACAAGAATGAAAGTTGAGAATTTGATTATGAGTTGTTGAGAAGCACATAGGTTTACTTGTTATAAAAGCCTTTGCACTGTTTGATGCATATTTTACATTGATATGGTTTTGGAACCCTTATCCATTGGGTTATGTTTGAAATCTTGTGCCATTCTTCTTAGAATGATGAGTCTCTCTTCATGTCAAACTTGCTGTGGAACAGATGTATTGGCGATCCACAAACACAAGGGTGGAGGAGATGAGAGTGAGAAGGAGAGATGTTGAACAATGGATGTCGCATCGCTTACTCCCTGAGAATATGAGGGAGCGGGTTCGAAGGTATAAACATTACACGTGGCTAGAAACCAGAGGTGTTGATGAACACAATCTGCTGCTTAATCTGCCTAGAGACCTCCAACGAGATATCAAGCGCCATCTTTGCTTGCCTTTGCTTATGCGAGTGAGTTTCTTTTGTTTTGTTAACATGTAGACTACGTATGAATGTATGTATGTGTATCATTGACAAGCTTAAGAATGGTTTTGAAATGATTTGAGAGTAGTGTCTTAAAGTGAAACACACACGCACTTATATACATTTTCTCTATAAGCACTTTTGGAGAAAATACAAGCTCGGTTACACACACATTGCTAGCTCAACTTTTTTTAATTGATTCTGATGATTTATGTACGTTTTCCATTAAGGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGACGCGATGTGTGCCCGTCTCAAGCCAGTGTTGTACACACAAGAAAGCTGCGTTGTTCGGGAAGGCGATCCAGTTGACGAGATGCTCTTCATCATGCGAGGCAAGCTCCTAACCATGACTACAAATGGTGGGAGAACTGGTTTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCCATTTCAACTCGAACCGTCCGATCCCTGACAGAAGTCGAAGCATTTGCTTTTAAACCCGATGACTTGAAAGTTGTAGCCTCTCAATACCGCAGGCTTCACAGCAAGCAGCTGCGCCAGATATTCAGATTCTACTCGCACCAATGGAGAACCTGGGCAGCTTGCTTTGTACAAGCAGCATGGCGGCGCCATCGAAGAAAGCAGCTAAGAGAGTCTCTCAGGGAAGAAGAGAGTAGGTTGAAAGACGCATTGGCTTGTCTCGAGGGGCGGTCACCAAGTTTAGGCGCCACCATTTATGCATCTAGATTCGCTTCTAACATGCTTCGCGCCATGAGAAGGAATGGTACTAGGAAAGCTAGGATGTCCATGCTGCTTCAGAAGCCAGCAGAGCCTGATTTTACCTTGGAAGATAACAACACATAGCCATACACTAGAAAGATAACACACACATTTGTTGTTTATGATTCTATATTAAGCTGTTCTTATTTGAAATGGTTCATTTCATTGGGCTTGTGAGAATTGTCTTTGCAGCTCTCTCTTTCTCCATCCGAAAAAATTATTGCCTCGACCAGAAAATCTGTATCTCCTGATAACCATTGGATACAGATTCTAAGTGCTTTTGCAATTTCTCTTTTATACATCAGATGGTAAAAGATTACCGACCACGTTGTGGTCGTTCCTCGAATAATTTCTCCTCTCTCCTTGGCAGAGGGATACATTATTGAAACCTTCAAAAAGTAGAGTTTGGTTGTAATGCACTAAAGCAAAAAATGTGTTTTTGCTTTTTGTTATGACAGATTGACCAGTCTATGGGAGAGGGGTCACAGTTGCAGTGTAAATTATTGAACACTTGCCAACATAAATATCTGGTGTTTTTCTGCTTTTTATTATGTTATGCCACATTCAATTGTGAAGTGATTGATAAGATTGAG ATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCATTTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCTTCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGTTGGTTTGAAATGGATGCTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCAAGATCCCAGGCTAG ATGTCGTCTCTGTCGTTGACAAATCCCACAAATGCAGAGACAAAACTCTTCAGTCCAAACCCACCTTCTTCGACCTTCGCCGCGGGTCCCAAAAGCACCAAATTTCTCATTTCCGATCATCTAAAAGTCACACTCGCCTTGAGTCGACCAGTCAATTTTCAGACGAAACTTTTATCATTCATAATGGCAGTTCGGGGTTTTCCTTGCAAGTTTTATAGCTTCAACGAGGGAGTCGGTGTTTTCTTTAATTTCTTGCTGTTCCCTTTGGTGGGTATGGTTGATTTCTCGTGCATTACGAACTTCCCTAATCTGGTTGGTTTGAAATGGATGCTTGGTGATCTTACTGTGGCTATGGATAATCTTCCTGTATTTCCTCTGTGTGATTTAGTGGGTTTCAAGATCCCAGGCTAG MSSLSLTNPTNAETKLFSPNPPSSTFAAGPKSTKFLISDHLKVTLALSRPVNFQTKLLSFIMAVRGFPCKFYSFNEGVGVFFNFLLFPLVGMVDFSCITNFPNLVGLKWMLGDLTVAMDNLPVFPLCDLVGFKIPG Homology
BLAST of Spg002394.1 vs. NCBI nr
Match: XP_008439337.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]) HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06 Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Spg002394.1 vs. ExPASy TrEMBL
Match: A0A1S3AZ79 (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484155 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06 Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Spg002394.1 vs. ExPASy TrEMBL
Match: A0A1S3AZ82 (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484155 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 6.0e-04 Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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