Spg001180.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg001180.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Xylulose kinase
Location	scaffold8: 37991205 .. 37992270 (+)
Sequence length	369
RNA-Seq Expression	Spg001180.1
Synteny	Spg001180.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAATGGGCTGGAGAAGGATACAAAATCGTAACCCAGTGGAAAATTTTGACAGGGCTACTATGGTAAATGACAAATTAGAGTAACTATTGAGGTTCTGAAACTAAACTCGTTACATTTAAATCTCTCATCTGAGTTCCTCCAGTGATAGGTTTTGCAAGTATTAAGCGAGTTGACATTTAACAAGAATGTTTGTGCAGGCTTTCCAAACGAATTAACAAATGGCTCCCAGGTTTCATCCTTCTGCTTCCTTTAAAGAATTAACAAGTCATTATTCTGGTTGCAGAGTTCACATCTTCGTCTGACTTTAAATAGAACGTTTCTTTTACTGTTCTTAAAGTGAGACAAACATCATTCATCAGTAACTGCAACTTTGCTATTTTCTTTGTTTTTATCTGCAGATTACATCCACGGCCAGAAAATGATGTCGAATATTTGCATGGAATTCTGGAATCTTTTGCGCGTATCGAGGTAAGGGAAAAAGACACCATGCTTTTAGGTTCAAACTGTGAAACTTAAGTGCAAAGAAAAGAAATTGACTCATAAGCCATAACCATTTGACTAGAAGCCTAAAAATTGGTCTGTTTTATACATTTAGGCAAAGGCTTATAGGTTATTGAAGGATCTAGGAGCAACTCAGGTTGAAGAAGTGTTCACAGCTGGAGGTGGATCCAAAAATGAGAAATGGACGAAGATCCGAGAGAGAGTTCTTGGTTTGCCTGTGAGTCGAGCAAGTCAGACCGAGGCTGCGTATGGAGCTGCTCTATTGGCATTAAGAGGTGCCCAATGAGCCATTCAATGAGTGCATTGTACATTTTTGGCAGGAATCTTATATTTGGTTGACAAGAATTATCATTTATCAATTTGTAAAGTGCATCTACTTTTTCTTATTTTCTTGTAAGTTAGAAATTGTCTATGAAAGCTTTGCAAAGAAAATGTCAAAATATGGGAGTTTGGGACAAGGGGTTGGAGTTGTTTTATCCTAAGAATTAGAATAGGAGTTAATAAATAAATATGTGGAATCCACAATAAAGTGTTGGAATAAGAGTTAATAAATTTGTGC

mRNA sequence

ATGAGTGAATGGGCTGGAGAAGGATACAAAATCGTAACCCAGTGGAAAATTTTGACAGGGCTACTATGTAACTGCAACTTTGCTATTTTCTTTGTTTTTATCTGCAGATTACATCCACGGCCAGAAAATGATGTCGAATATTTGCATGGAATTCTGGAATCTTTTGCGCGTATCGAGGCAAAGGCTTATAGGTTATTGAAGGATCTAGGAGCAACTCAGGTTGAAGAAGTGTTCACAGCTGGAGGTGGATCCAAAAATGAGAAATGGACGAAGATCCGAGAGAGAGTTCTTGGTTTGCCTGTGAGTCGAGCAAGTCAGACCGAGGCTGCGTATGGAGCTGCTCTATTGGCATTAAGAGGTGCCCAATGA

Coding sequence (CDS)

ATGAGTGAATGGGCTGGAGAAGGATACAAAATCGTAACCCAGTGGAAAATTTTGACAGGGCTACTATGTAACTGCAACTTTGCTATTTTCTTTGTTTTTATCTGCAGATTACATCCACGGCCAGAAAATGATGTCGAATATTTGCATGGAATTCTGGAATCTTTTGCGCGTATCGAGGCAAAGGCTTATAGGTTATTGAAGGATCTAGGAGCAACTCAGGTTGAAGAAGTGTTCACAGCTGGAGGTGGATCCAAAAATGAGAAATGGACGAAGATCCGAGAGAGAGTTCTTGGTTTGCCTGTGAGTCGAGCAAGTCAGACCGAGGCTGCGTATGGAGCTGCTCTATTGGCATTAAGAGGTGCCCAATGA

Protein sequence

MSEWAGEGYKIVTQWKILTGLLCNCNFAIFFVFICRLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRERVLGLPVSRASQTEAAYGAALLALRGAQ

Homology

[Close]

BLAST of Spg001180.1 vs. NCBI nr
Match: XP_023512561.1 (uncharacterized protein LOC111777264 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023512563.1 uncharacterized protein LOC111777266 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-38
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 314 RLHPRPENDVEYLHGILESIARIEGKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 373

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLAL+GAQ
Sbjct: 374 VLGLPVSRASQTEAAYGAALLALKGAQ 400

[Close]

BLAST of Spg001180.1 vs. NCBI nr
Match: XP_023512560.1 (uncharacterized protein LOC111777264 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-38
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 391 RLHPRPENDVEYLHGILESIARIEGKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 450

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLAL+GAQ
Sbjct: 451 VLGLPVSRASQTEAAYGAALLALKGAQ 477

[Close]

BLAST of Spg001180.1 vs. NCBI nr
Match: XP_023512562.1 (uncharacterized protein LOC111777264 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-38
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 406 RLHPRPENDVEYLHGILESIARIEGKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 465

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLAL+GAQ
Sbjct: 466 VLGLPVSRASQTEAAYGAALLALKGAQ 492

[Close]

BLAST of Spg001180.1 vs. NCBI nr
Match: KAG7010896.1 (Xylulose kinase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-38
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 364 RLHPRPENDVEYLHGILESIARIEGKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 423

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLAL+GAQ
Sbjct: 424 VLGLPVSRASQTEAAYGAALLALKGAQ 450

[Close]

BLAST of Spg001180.1 vs. NCBI nr
Match: KAG6571081.1 (D-ribulose kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.5 bits (423), Expect = 6.9e-38
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 391 RLHPRPENDVEYLHGILESIARIEGKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 450

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAAL+AL+GAQ
Sbjct: 451 VLGLPVSRASQTEAAYGAALMALKGAQ 477

[Close]

BLAST of Spg001180.1 vs. ExPASy Swiss-Prot
Match: Q8L794 (D-ribulose kinase OS=Arabidopsis thaliana OX=3702 GN=XK1 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.5e-31
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RL PRPE+DVE+LHGILES ARIE K Y+LLK+LGAT+ EEV TAGGG+KN+KW KIR+R
Sbjct: 387 RLLPRPESDVEFLHGILESIARIEGKGYKLLKELGATEAEEVLTAGGGAKNDKWIKIRQR 446

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPV +A  TEA+YGA+LLAL+GA+
Sbjct: 447 VLGLPVKKAVHTEASYGASLLALKGAK 473

[Close]

BLAST of Spg001180.1 vs. ExPASy Swiss-Prot
Match: Q31KC7 (D-ribulose kinase OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=PSK PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18
Identity = 40/85 (47.06%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           +L PRPEN V++L G+LE   ++E   Y+ L+DLGAT ++ ++TAGGG+KN  W ++R++
Sbjct: 330 QLEPRPENPVQFLQGLLEGLTQVETLGYQRLQDLGATPLKRIWTAGGGAKNAVWQQLRQQ 389

Query: 96  VLGLPVSRASQTEAAYGAALLALRG 121
            +G+P++ A  TEAA+G A LA  G
Sbjct: 390 AIGVPIAIAPNTEAAFGTARLAAFG 414

[Close]

BLAST of Spg001180.1 vs. ExPASy TrEMBL
Match: A0A6J1FVB8 (uncharacterized protein LOC111448774 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111448774 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYR LKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 348 RLHPRPENDVEYLHGILESIARIEGKAYRSLKDLGATQVEEVFTAGGGSKNEKWTKIRER 407

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLALRGAQ
Sbjct: 408 VLGLPVSRASQTEAAYGAALLALRGAQ 434

[Close]

BLAST of Spg001180.1 vs. ExPASy TrEMBL
Match: A0A6J1FXW8 (uncharacterized protein LOC111448774 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111448774 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYR LKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 406 RLHPRPENDVEYLHGILESIARIEGKAYRSLKDLGATQVEEVFTAGGGSKNEKWTKIRER 465

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLALRGAQ
Sbjct: 466 VLGLPVSRASQTEAAYGAALLALRGAQ 492

[Close]

BLAST of Spg001180.1 vs. ExPASy TrEMBL
Match: A0A6J1FU00 (uncharacterized protein LOC111448774 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448774 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYR LKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 388 RLHPRPENDVEYLHGILESIARIEGKAYRSLKDLGATQVEEVFTAGGGSKNEKWTKIRER 447

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLALRGAQ
Sbjct: 448 VLGLPVSRASQTEAAYGAALLALRGAQ 474

[Close]

BLAST of Spg001180.1 vs. ExPASy TrEMBL
Match: A0A6J1FYK4 (uncharacterized protein LOC111448774 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448774 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.4e-38
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE KAYR LKDLGATQVEEVFTAGGGSKNEKWTKIRER
Sbjct: 391 RLHPRPENDVEYLHGILESIARIEGKAYRSLKDLGATQVEEVFTAGGGSKNEKWTKIRER 450

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLALRGAQ
Sbjct: 451 VLGLPVSRASQTEAAYGAALLALRGAQ 477

[Close]

BLAST of Spg001180.1 vs. ExPASy TrEMBL
Match: A0A6J1JG91 (uncharacterized protein LOC111484231 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484231 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-37
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RLHPRPENDVEYLHGILES ARIE K YRLLKDLGATQVEEV TAGGGSKNEKWTKIRER
Sbjct: 391 RLHPRPENDVEYLHGILESIARIEGKGYRLLKDLGATQVEEVLTAGGGSKNEKWTKIRER 450

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPVSRASQTEAAYGAALLAL+GA+
Sbjct: 451 VLGLPVSRASQTEAAYGAALLALKGAR 477

[Close]

BLAST of Spg001180.1 vs. TAIR 10
Match: AT2G21370.1 (xylulose kinase-1 )

HSP 1 Score: 134.8 bits (338), Expect = 4.6e-32
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RL PRPE+DVE+LHGILES ARIE K Y+LLK+LGAT+ EEV TAGGG+KN+KW KIR+R
Sbjct: 387 RLLPRPESDVEFLHGILESIARIEGKGYKLLKELGATEAEEVLTAGGGAKNDKWIKIRQR 446

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPV +A  TEA+YGA+LLAL+GA+
Sbjct: 447 VLGLPVKKAVHTEASYGASLLALKGAK 473

[Close]

BLAST of Spg001180.1 vs. TAIR 10
Match: AT2G21370.2 (xylulose kinase-1 )

HSP 1 Score: 134.8 bits (338), Expect = 4.6e-32
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 36  RLHPRPENDVEYLHGILESFARIEAKAYRLLKDLGATQVEEVFTAGGGSKNEKWTKIRER 95
           RL PRPE+DVE+LHGILES ARIE K Y+LLK+LGAT+ EEV TAGGG+KN+KW KIR+R
Sbjct: 294 RLLPRPESDVEFLHGILESIARIEGKGYKLLKELGATEAEEVLTAGGGAKNDKWIKIRQR 353

Query: 96  VLGLPVSRASQTEAAYGAALLALRGAQ 123
           VLGLPV +A  TEA+YGA+LLAL+GA+
Sbjct: 354 VLGLPVKKAVHTEASYGASLLALKGAK 380

The following BLAST results are available for this feature:

BLAST of Spg001180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512561.1	4.1e-38	96.55	uncharacterized protein LOC111777264 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023512560.1	4.1e-38	96.55	uncharacterized protein LOC111777264 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023512562.1	4.1e-38	96.55	uncharacterized protein LOC111777264 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
KAG7010896.1	4.1e-38	96.55	Xylulose kinase [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571081.1	6.9e-38	95.40	D-ribulose kinase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg001180.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L794	6.5e-31	73.56	D-ribulose kinase OS=Arabidopsis thaliana OX=3702 GN=XK1 PE=1 SV=1	[more]
Q31KC7	2.8e-18	47.06	D-ribulose kinase OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=11...	[more]

BLAST of Spg001180.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVB8	4.4e-38	96.55	uncharacterized protein LOC111448774 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FXW8	4.4e-38	96.55	uncharacterized protein LOC111448774 isoform X4 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FU00	4.4e-38	96.55	uncharacterized protein LOC111448774 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FYK4	4.4e-38	96.55	uncharacterized protein LOC111448774 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JG91	8.3e-37	93.10	uncharacterized protein LOC111484231 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Spg001180.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21370.1	4.6e-32	73.56	xylulose kinase-1	[more]
AT2G21370.2	4.6e-32	73.56	xylulose kinase-1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.40		coord: 32..122 e-value: 7.4E-14 score: 53.6
None	No IPR available	PANTHER	PTHR10196:SF80	D-RIBULOSE KINASE	coord: 36..122
None	No IPR available	PANTHER	PTHR10196	SUGAR KINASE	coord: 36..122
IPR018485	Carbohydrate kinase, FGGY, C-terminal	PFAM	PF02782	FGGY_C	coord: 47..119 e-value: 1.0E-7 score: 31.9
IPR043129	ATPase, nucleotide binding domain	SUPERFAMILY	53067	Actin-like ATPase domain	coord: 46..121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg001180	Spg001180	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001180.1-cds	Spg001180.1-cds-scaffold8:37991205..37991272	CDS
Spg001180.1-cds	Spg001180.1-cds-scaffold8:37991570..37991678	CDS
Spg001180.1-cds	Spg001180.1-cds-scaffold8:37991806..37991997	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001180.1-three_prime_utr	Spg001180.1-three_prime_utr-scaffold8:37991998..37992270	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg001180.1	Spg001180.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0016773	phosphotransferase activity, alcohol group as acceptor