Sgr028259.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview
NameSgr028259.1
TypemRNA
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionUnknown protein
Locationtig00153056: 5129111 .. 5129408 (-)
Sequence length180
RNA-Seq ExpressionSgr028259.1
SyntenySgr028259.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTATGATTCAACTTACTTCAGTAGCAACCAGAAGCAGAAAGAGAATCTGATAACTCCTCAGGTAATTAATCAGAAAGGTTCAAACTTTTGATTAGGGTGTGTTCGGGATCTCTTTATTCTCATTTTTCTCGAGAAAAGAAACTAATTTTCCGGGAAAATGGATGTGATTTTCTGGGCAGGTAGATGAGAGAAGAAAAATGGGGATTGTTGGAATGGGCAGTGACTGCACAGAATTGAAGAAAAGAGGCCTCTGCTTAGTACCTTTGTCTATGGTAGTTGATTATTTGGCTGAATAA

mRNA sequence

GTTTATGATTCAACTTACTTCAGTAGCAACCAGAAGCAGAAAGAGAATCTGATAACTCCTCAGGTAGATGAGAGAAGAAAAATGGGGATTGTTGGAATGGGCAGTGACTGCACAGAATTGAAGAAAAGAGGCCTCTGCTTAGTACCTTTGTCTATGGTAGTTGATTATTTGGCTGAATAA

Coding sequence (CDS)

GTTTATGATTCAACTTACTTCAGTAGCAACCAGAAGCAGAAAGAGAATCTGATAACTCCTCAGGTAGATGAGAGAAGAAAAATGGGGATTGTTGGAATGGGCAGTGACTGCACAGAATTGAAGAAAAGAGGCCTCTGCTTAGTACCTTTGTCTATGGTAGTTGATTATTTGGCTGAATAA

Protein sequence

VYDSTYFSSNQKQKENLITPQVDERRKMGIVGMGSDCTELKKRGLCLVPLSMVVDYLAE
Homology
BLAST of Sgr028259.1 vs. NCBI nr
Match: XP_038899309.1 (vascular-related unknown protein 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   VYDSTYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYLAE 60
           V DSTYFS NQK KENL TP+VDERR+MG  VGMG+D  ELKKRGLCLVPLSMVV+Y AE
Sbjct: 121 VCDSTYFSKNQKHKENLRTPEVDERREMGNFVGMGNDYRELKKRGLCLVPLSMVVNYFAE 180

BLAST of Sgr028259.1 vs. NCBI nr
Match: XP_031739077.1 (vascular-related unknown protein 4 [Cucumis sativus] >KGN58042.2 hypothetical protein Csa_010736 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 4   STYFSSNQKQKENLITPQVDERRKM-GIVGMGSDCTELKKRGLCLVPLSMVVDYLAE 60
           STYFS NQK ++NLI P+V+ERR+M  ++G+G+D TELKKRGLCLVPLSMV++YL +
Sbjct: 127 STYFSKNQKHRDNLIAPEVEERREMDNLIGIGNDYTELKKRGLCLVPLSMVLNYLPQ 183

BLAST of Sgr028259.1 vs. NCBI nr
Match: XP_022976591.1 (vascular-related unknown protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 1   VYDSTYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYL 58
           V DS YFS N + K  LITPQVDERR +G ++G+GS+ TELKKRGLCLVP SM+++Y+
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDIGDLIGIGSEYTELKKRGLCLVPFSMIINYM 178

BLAST of Sgr028259.1 vs. NCBI nr
Match: XP_022937320.1 (vascular-related unknown protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 1   VYDSTYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYL 58
           V DS YFS N + K  LITPQV ERR++G ++G+GS+ TELKKRGLCLVP SM+++Y+
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYM 178

BLAST of Sgr028259.1 vs. NCBI nr
Match: XP_008454531.1 (PREDICTED: uncharacterized protein LOC103494923 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 4   STYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYLAE 60
           STYFS NQ  K+NLI P+V+ER++MG ++ +G+  TELKKRGLCLVPLSMV++YL +
Sbjct: 126 STYFSKNQ-DKDNLIVPEVEERKEMGDLIEIGNKYTELKKRGLCLVPLSMVLNYLPQ 181

BLAST of Sgr028259.1 vs. ExPASy TrEMBL
Match: A0A6J1IHA8 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 1   VYDSTYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYL 58
           V DS YFS N + K  LITPQVDERR +G ++G+GS+ TELKKRGLCLVP SM+++Y+
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVDERRDIGDLIGIGSEYTELKKRGLCLVPFSMIINYM 178

BLAST of Sgr028259.1 vs. ExPASy TrEMBL
Match: A0A6J1FG95 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 1   VYDSTYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYL 58
           V DS YFS N + K  LITPQV ERR++G ++G+GS+ TELKKRGLCLVP SM+++Y+
Sbjct: 121 VCDSNYFSKNPRHKGKLITPQVHERREIGDLIGIGSEYTELKKRGLCLVPFSMILNYM 178

BLAST of Sgr028259.1 vs. ExPASy TrEMBL
Match: A0A5D3E2F7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold588G00240 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-10
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 4   STYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYLAE 60
           STYFS NQ  K+NLI P+V+ER++MG ++ +G+  TELKKRGLCLVPLSMV++YL +
Sbjct: 121 STYFSKNQ-DKDNLIVPEVEERKEMGDLIEIGNKYTELKKRGLCLVPLSMVLNYLPQ 176

BLAST of Sgr028259.1 vs. ExPASy TrEMBL
Match: A0A1S3BZL3 (uncharacterized protein LOC103494923 OS=Cucumis melo OX=3656 GN=LOC103494923 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-10
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 4   STYFSSNQKQKENLITPQVDERRKMG-IVGMGSDCTELKKRGLCLVPLSMVVDYLAE 60
           STYFS NQ  K+NLI P+V+ER++MG ++ +G+  TELKKRGLCLVPLSMV++YL +
Sbjct: 126 STYFSKNQ-DKDNLIVPEVEERKEMGDLIEIGNKYTELKKRGLCLVPLSMVLNYLPQ 181

BLAST of Sgr028259.1 vs. ExPASy TrEMBL
Match: A0A6J1FLD8 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111446469 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1   VYDSTYFSSNQKQKENLITPQVDERRKMGIVGMGSDCTELKKRGLCLVPLSMVVDYLAE 60
           V D+T+FS N    EN I  +V+ERR+MG+VG+G++  ELKKRGLCLVPL MV++YLA+
Sbjct: 119 VSDATFFSKNSGHNENQI--KVNERREMGLVGIGNEYKELKKRGLCLVPLCMVMNYLAQ 175

BLAST of Sgr028259.1 vs. TAIR 10
Match: AT5G54790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 39.7 bits (91), Expect = 9.8e-04
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 0

Query: 23  DERRKMGIVGMGSDCTELKKRGLCLVPLSMVVDYL 58
           DE+R   +   G    +LKK+GLCLVPLSMV ++L
Sbjct: 130 DEKRVSAVPNQGGLPIDLKKKGLCLVPLSMVTNFL 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899309.11.8e-1578.33vascular-related unknown protein 4-like isoform X1 [Benincasa hispida][more]
XP_031739077.11.9e-1266.67vascular-related unknown protein 4 [Cucumis sativus] >KGN58042.2 hypothetical pr... [more]
XP_022976591.11.6e-1163.79vascular-related unknown protein 4-like isoform X1 [Cucurbita maxima][more]
XP_022937320.11.0e-1062.07vascular-related unknown protein 4-like isoform X1 [Cucurbita moschata][more]
XP_008454531.11.9e-0963.16PREDICTED: uncharacterized protein LOC103494923 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IHA87.6e-1263.79Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111476942 PE=4 SV=1[more]
A0A6J1FG954.9e-1162.07Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111443646 PE=4 SV=1[more]
A0A5D3E2F79.3e-1063.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BZL39.3e-1063.16uncharacterized protein LOC103494923 OS=Cucumis melo OX=3656 GN=LOC103494923 PE=... [more]
A0A6J1FLD82.1e-0959.32Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111446469 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G54790.19.8e-0451.43unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sgr028259Sgr028259gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sgr028259.1.exon2Sgr028259.1.exon2exon
Sgr028259.1.exon1Sgr028259.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Sgr028259.1cds.Sgr028259.1_2CDS
cds.Sgr028259.1cds.Sgr028259.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sgr028259.1Sgr028259.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0010089 xylem development