Sgr024091.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr024091.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Protein ALTERED XYLOGLUCAN 4
Location	tig00001047: 3149113 .. 3150233 (+)
Sequence length	480
RNA-Seq Expression	Sgr024091.1
Synteny	Sgr024091.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCAAAGCATAACAATGGCGTCGAAGCTTCAAGCTTCGACTGTGTTACCGAGAACAAAAGAGAACAGCTCCCGAACAGGAGAAAATTCTACCAACCCAATATCAATTGCATACCCGGAAACAGGTAACTTCAAATCCCTTAGAACACAAAATGCCTCTGCCATCCGAGCCTTGGGCACCTCCTGAGCAACAGCGCAATGGGGAATCCACGAGCCCAGGCGATATTCTTCCCCGATTTCAATTCCTTCTTTCCTCATTGCTTCGCATAATTGAGACTGAAATTGGAGAAGTGAAATTGACGGCGCTGGACCGAGAAAGAGAATGTTGTTGTCACTGGGAAGGCTGCCTATTGACGCTAAGGACAAAGGCAAGGGCTCTTGTTTGGCAGCGAAATTTTTAACGATGGATTCAACTTTCGCGGGTTCGACAAAGGGGCCGGAGAAGAGGGTAATGTGAGGGCGAGATTCAATTTCAATGAGTTGCGTACTAATTTGACGGCGAGCTAGTACATTCCAAGCCTTCAGAACCTGATTTTCAAGTGCCGGATCGAAATAGAGCTCGATCGCATAGCCTTGTGACATCGCCTCAGAACTCAAAATTCGCAGGGTAAATTAGTGAAAAACAGGGAAAAATAAACGGAACCCAGAAGTTAATTTAAATTTTTCAGAAAAAGAAAAGCGGGAAACAAAAGAGGATCAGAATCAGAACTATCTGAAATGGGAAATTCAAAACCCTAGAGATCCAACACAAAAAACAAAAGAAAATATAAACACCCAGAAGAAATTGATGGATACAGATGCCGAAAAAACTACAAAAATGCGAGAAGGAGCTTAAAGATAAAATGGAAAATACGAATTTTGGAGAAAGAGGAGTTTGAGAAGGTCGATGGAAAGGAGATAAAGAAAAACTGAAGTTGTGGGTCGGAAAGAGACGGGGAACAAAGAAAAAGAGGGATCAAAGGAAAGCTTTTGGAAGATACTCTTCGATGGAGCTGCAAGCCACTTGCGAGGACGGAGCCAGATTAGCTGTCCCGAGTGGATCGAAACCGAGGAAGACGAAGAGAGGAGAGGGAGAGAGACGGGCTCGGCCGGCCCGCTTACGACCCAACCAGCGTTGA

mRNA sequence

ATGAGATCAAAGCATAACAATGGCGTCGAAGCTTCAAGCTTCGACTGTGTTACCGAGAACAAAAGAGAACAGCTCCCGAACAGGAGAAAATTCTACCAACCCAATATCAATTGCATACCCGGAAACAGAAGTGAAATTGACGGCGCTGGACCGAGAAAGAGAATGTTGTTGTCACTGGGAAGGCTGCCTATTGACGCTAAGGACAAAGGCAAGGGCTCTTGTTTGGCAGCGAAATTTTTAACGATGGATTCAACTTTCGCGGGTTCGACAAAGGGGCCGGAGAAGAGGGTAATACGGGGAACAAAGAAAAAGAGGGATCAAAGGAAAGCTTTTGGAAGATACTCTTCGATGGAGCTGCAAGCCACTTGCGAGGACGGAGCCAGATTAGCTGTCCCGAGTGGATCGAAACCGAGGAAGACGAAGAGAGGAGAGGGAGAGAGACGGGCTCGGCCGGCCCGCTTACGACCCAACCAGCGTTGA

Coding sequence (CDS)

ATGAGATCAAAGCATAACAATGGCGTCGAAGCTTCAAGCTTCGACTGTGTTACCGAGAACAAAAGAGAACAGCTCCCGAACAGGAGAAAATTCTACCAACCCAATATCAATTGCATACCCGGAAACAGAAGTGAAATTGACGGCGCTGGACCGAGAAAGAGAATGTTGTTGTCACTGGGAAGGCTGCCTATTGACGCTAAGGACAAAGGCAAGGGCTCTTGTTTGGCAGCGAAATTTTTAACGATGGATTCAACTTTCGCGGGTTCGACAAAGGGGCCGGAGAAGAGGGTAATACGGGGAACAAAGAAAAAGAGGGATCAAAGGAAAGCTTTTGGAAGATACTCTTCGATGGAGCTGCAAGCCACTTGCGAGGACGGAGCCAGATTAGCTGTCCCGAGTGGATCGAAACCGAGGAAGACGAAGAGAGGAGAGGGAGAGAGACGGGCTCGGCCGGCCCGCTTACGACCCAACCAGCGTTGA

Protein sequence

MRSKHNNGVEASSFDCVTENKREQLPNRRKFYQPNINCIPGNRSEIDGAGPRKRMLLSLGRLPIDAKDKGKGSCLAAKFLTMDSTFAGSTKGPEKRVIRGTKKKRDQRKAFGRYSSMELQATCEDGARLAVPSGSKPRKTKRGEGERRARPARLRPNQR

Homology

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BLAST of Sgr024091.1 vs. ExPASy TrEMBL
Match: A0A2U1ML09 (Protein ALTERED XYLOGLUCAN 4 OS=Artemisia annua OX=35608 GN=CTI12_AA368460 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-04
Identity = 28/51 (54.90%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 48  GAGPRKRMLLSLGRLPIDAKDKGKGSCLAAKFLTMDSTFAGSTKGPEKRVI 99
           G G R   LLSL RLPID  DKGKGSC  A   T+ S+  GS  G E +VI
Sbjct: 314 GVGARNNTLLSLARLPIDPNDKGKGSCFDANPFTIFSSLEGSINGLENKVI 364

The following BLAST results are available for this feature:

BLAST of Sgr024091.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sgr024091.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sgr024091.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2U1ML09	5.4e-04	54.90	Protein ALTERED XYLOGLUCAN 4 OS=Artemisia annua OX=35608 GN=CTI12_AA368460 PE=3 ...	[more]

BLAST of Sgr024091.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr024091	Sgr024091	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr024091.1.exon1	Sgr024091.1.exon1	exon
Sgr024091.1.exon2	Sgr024091.1.exon2	exon
Sgr024091.1.exon3	Sgr024091.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr024091.1	cds.Sgr024091.1	CDS
cds.Sgr024091.1	cds.Sgr024091.1_2	CDS
cds.Sgr024091.1	cds.Sgr024091.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr024091.1	Sgr024091.1-protein	polypeptide