Sgr022040.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr022040.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	replication factor C subunit 2
Location	tig00153874: 186028 .. 199089 (-)
Sequence length	999
RNA-Seq Expression	Sgr022040.1
Synteny	Sgr022040.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCTTCTTCTGGCAACAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTGGGCAACGAAGATGCAGTTTCAAGGCTCCAAGTTATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGTATTTCTCCATCTCTAATCCCCATCCAACATTTTTGCAGTTCAATTTTTATTGCAGCCATTAATGACATAGTTCAGCTAGGTTCATGGGATTGAGTTACTTTTTAATTTAGTTTTGAACTTATTTCCAAGATGGTAGTGGACTACTATTTAGTTATGTGAAGAAAAAATCATACAGCTCCGACGTTCTGTTTCTTTGAACTGTTTCCATGGCTGCTGGGGGATGTGGGAACTAGGAAGGCCGGGATATTGTCCTGTTTTTGGCAATCATTTTGGGTTTTTGAAAGCATTGCTGTCAAACGTGCAAAATTTTTCAGCCACCATGGGTTACGGGCGAAGTAAAAGTAGTTTGGGGAATTGGTTAAAACTGGATGGTGGCATCTGCCTAGATATTAAAATACTATGCTCTGATAACCAAATTTTCTAGAATCGGATGAGTTGTCTTGTGAGATTAGTCGAGGTGCCGTAAGCTAGCTCAACCACTTTTGTTCATTAAAAAAGAATGCACAATTTTTCCTTTTGTCTTGCTGTTGGTGCTAATCTACGTAGTTGCTATATACTTGTGTTCTAGGGTCCGCCAGGAACTGGGAAAACGACCAGTATTCTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGAGGCTGTACTGGAGCTCAATGCATCAGATGATAGGTGAGATATTCTGTCCGTTCTAAACTTAGGACTTCTCAACTGTTACTTGATCTGTATGTTTTTCTAATCTACGTTCTTATTTAGGGGAATAGATGTTGTGAGGAACAAAATCAAAATGTTTGCCCAAAAGAAAGTTACTTTACCTCCTGGTCGACACAAAGTGGTCATATTGGATGAAGCTGACAGGTAGGTTTTTAATAGATAATGTGATATATCTCATAGCGTATACGGTGCAACAATATCCAAAAATCCGTTTTATGTGTGTGCTAATTCCACTTTCTAGGCACTATTTGTTTCTAAAAGGAACCAGGAGCCCTTTCTCCGATGTTTTCTATTTTAATTTCCCCCTCCCTTTTTGCATTCTTATCCCTCATGTATTTTTGTTTTCTTTTGCGTTGTTCTTCATTTTCTTACTTCATTGATTATTTATTTATTTTGGTGATGTTTATGATTGTGAAAATAATTCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGAACAATGGAAATATATTCAAACACAACTCGTTTTGCCCTTGCATGTAATACCTCTTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCGATTGTCCGATTTTCAAGATTAACAGATCAGGAGATTCTTGGTCGCCTAATGGTGGTGCTTCAAGCAGAAAAGGTATCAATTGTTTGGACAATGATTAGATCTGCGTTCCTTACTATTGATTTATGTTGGTATAATCACAATCATTCTGATAAATTTAATTGTTGTCATTGGAAATTTCATTCTGCTTAATTATTTTTTGGAGGCAGTATCACTTCTTATTGAAAGCTTGAAAGAAGTACTACTCTAGATCTCATGTAATTTGATTTATTATGCATTGGTCTCATAGTCCTTGGGATGGGAATGACTAGCTTGTTTAGTTATCTCCGTTTATATTCTTAAACTGTATTGTCTATACGGATAAAGAACCTTGTTCCTCTTAAAGTTACTTCTGTTAGGACTGAATTTCTAATAGATATGTGTCTTATACCATTGCCATTTGAACAAAAGTATAACGATGTAATTGCTGATTTTGCATGTTACATCAATATCTTTTCAACATTTGGGAATGGATTCATGGGCATACTTTTTGAGAATTTTTTTCATCTAATGTTGGAGGTAGATTATTATTATTATTATTATTTTTAATGGTGTTGTTGGAGATCATCAGCACCTGTCATGGTAAGTCTATCAACACCTTTGGAAAGCAGGTCTAGTGCTCAAGAATTTTTTTTTCAGAATACATTGAAAATGGAGCGCACATTTGGGATCTTTCTTAGTTGGAAACTAATGGGAGTCTAGACTAACTTGTAAAACAACATTGTAAACTTAGAAAATTATGAAAGACTCATGAAGGTAGTGATAGTCCTTCCATGTTTCATATTCTTGAGAGTGCTAAATGTTCAGATTTTGTAACAAGTCTTTCTTCTCCACATTTGAGAGAACGTGAACATTTTAAACCATTATTATGTCACTAGATGAATTCATGGAAAACCTATAGGTAGAAAGGGTAAAAATATATGTAATGATTCAATAAAATCATTGAGCAGTTAAGCTTATTGATGTCCCTTTAAAAATGGTTGATGCATGTGGTCTAATATTGTAGGAATTTTCTTCTTGGTGTCGCATGACAGATTTATCGTTTCTCCTAATTGAACTTCTTCCTTCGAAATTCTAGTCTCTAGAATGTCAGCATGCTACCTTTTATCATTGTCCCATCTTAGTAGAGGCAAGTTCCTGCTAGTTGAGTCTTGGACCCTTTTAATTTGAGAAAAAGTGGTTGAACTTGAAAGTTGAAACTTTGAAGAGAAGTTGTTGGAGATAGGTGGAACTCTACGTAGGTTAAGAGCTGGTCAAAGTTTCTCCTTTATTAGAAAGCTCGATTTGTTCAAAAGCAATTTTAGTTTGTGGAACAAAGAGGTAATTGGGATGAGGTGAGTATTGAAGATTCCATCCCATGAGAATTGATGTGAAACCCTAGGGTTTGCAGATTAAAAACCCTTCCACTTAAGGAGGACCCCCAATTGTCAAAACCCTAAAACCCCAAATCGATTTAAAATCAACCCCAAGGGAAGAGATAGATTGGAATTACCTTGATGATCAAAGATCCAAGATAAGGAAGACAGGTACTTACCTAGGATTCGAACACTCCACAAGAAGGATGATCAGACCTACCTGAATGTTCTGGTTTGCAACCCTAGTTCAAGAATTGCAAAGGAGAAGATGAGCTCTCAGTCATCACAAAAGCAAAACTGCTCAAATTTCATTCTGTCAAATTCATTCGTCAACAACCTAATGGTGAGGCTTTATATGACCTCCCAATTAAACCCTAAATGCCACATCATTGGCTACATAAAAAAAAAGACGAAGATACCCCTAATTAATATTCTCTAAACAAGATAAAATTGGAAAATAATAAAATTACATCAAAATTCAAAAATAAAATGTGGATCATAATTTGAAGTCCCTGGGCGGTTCATATCATCCCCTCCCCCTTTTGAAGGATTCGTCCTCGAATCCAAACCGATACCTTGTAAAGCAGTTTTAAAGTCGTGAGAAGAAAATTGTGTGACTCTTCTCGGGCTTCTCTCAAAAGGTCTCCCTTGTAAAATAACTTTATAGTCAGAAGATGTCAAAGACTCATCTATTCTTAGATTCCATCTCTTTTGGAAAGAATGTTGATCCTTCCAATTCTCTTGTAGCTTGTGGCCATGGATGGAATTTGAAGCAAGTTTGGAGTTTGGCTTGAGTTGTTCCTTCATTTTGTACTCCACCTCATGCTCTCGGTTATGGTTAGATTTATGGCCAATCTTTGAGCTTTTCTTCATAATCAATGCATTAACAACCTGCAAAAACTCAAAAGAAAAACTAGGAAAACTTGGTTGAAGCTCTACTGTTAGAAAACAAACTCTTTTGTTAAAAAGTTCGAGAATGTTTTGTTTTGAAATTAAGAATGATTGGACCTCACAAGCTTTCAAACTAACATTCTTGGCTTTTATCTCATTTTGATCGCTAGACCGAGTACTACTCACTTGCTTTTCTCTCTCATTCACGTTTTCACACTTTTCTTTTTCAGATATTTCTATTGTTTTTGTCTCAATCTCATGCCTTTTGTTTTCCAACTCACACACATCAAGCTTTACTTCTCTCGGAAGGAATGTTACAAGAGTAGAACCATATGTTACTTTGTGATCTAATGTACTCACAATGTCATCACAAAGTATCATAGTTTCAAGCTCACTATTATCTACTTTCTCTACTTTACTACCATCAACACATGTTTCTCCATAAATAGGTGGTACAAAAGTATTAGTAGGATTACAATCATGTGATTCCTTGCTACCTAATGACCTACTAAGCAAAATATCATCATCATGCATAGGTACAAAATTAGCAATATTCTCTTTACTACTTTCTACCTTATGAAAATACTCAAATATAGTAGGTAAACTAACCTTTTCCATGGGTGTGTTGGCATTGGAACGAGGCGTAGAGTTAGTGTACCTTAAAAATCTCTTTTGAAGCTTCTTTTCTATCTTGATGGCTATGTGCACCATCTCTTCCAAACTATCACAAGGTCGAATTTCTTCTCGTTCGGCAATCACCTCGGCAATCTTTTCACTAAGTCCTTTGTAGAATCGGTCCATGGTAGCTTCCTCATCCTCGCAAAAGTTAATTTCCTCAAGTAATAAGAGCATCTCCTCGTAGTAGCTTTCCACACTCTTGCTCCCTTGTTTCAAAGTTCGCAATTTGTGGAAAGACTTAGGAACAAAACGCTTCCTCATTAGAAGTTTGATCTCTTTCCATGAGGGAATTGCATGGTTTTCACTCCTCCTTCTTTTTGACAACAAAATATTCCACCATGTTAGAGCATAATCCTTGAATGTAGAGACGACAAGTTTTACCTTTCCCTTTTCGCTATATTGGTGGAGATCAAATATGGCATCAATTTCCTCCTCCCAACAAAGGTACTTCTCCGGATTTGAAATATTTCCAAAGAACAATGTAGGCATATTTTCGTCAAAATGATGCTTTGGAACTCTTCTTTGAGTGTACATGGCTGCAAAAAGAGGTTCACATAAAGAAAATTGGGTCTCACAGTCACTCCCTCACATGTTTCACTATAAGATGGTAGTTCACTCGTGTTTACACTCTATAATAATTCTCTTCCTCACAATATTCAATCTCTCTCAAATATAGAGAGTGAAGGACTGAGAGTTTGCAATCAAGAATCTAAGAAAGCAAACAAGTAACAACTCAAGCAAGTATACTTGTAGAGTGTCAAACGTAAGTAAGCAACCCGTGAATGAAAGAAAAAAAAAATAGCTATGACTTCCCTAGGCTTTAAGACCCTAGGTGAGGACTTTATGCACGGACAACTATGCACAATTGGAAACAATGAATCCTAAATAAGATCTAAAACCAAGGACAGAAACAAGAGTAAGAATAATATAAGAACAGAATATTATTGATGAATAAGAAACAAGAGAACAAAAGATTAAATGACGAATTAATTTTTTTTTTTTTTTTTTTAAGCTGCCAAGTACCCAAACCCCGAATCTTAGGATCGTCAACAATATTGTTTTAGAGATTCTTAGAAGTCTCAAACTTAATTTAGCCTTTTAGGACTTTAATCTTGCAACTCAAATTTAGGTTGGGATAGAATTGAAGTACAATAATTGAAAAAAATAAAAGAATTGTGAAGCAGAAAAAAAAATAATAAATAATAGTAATTCTTTTTTTTTGTATTGCAGGCACCTCCTTTTTCCTTTTTCTTTTTTTTTTTTTTTGTTTTCTTCTTTCCTTCTTCCTGCCGCCTACGGCTTTCCTTTTCCTTTTTTTTTTTTTTTTTCTTCTTCTTTCCTTCTTCTTGCCGCCTACGGCTTTCCTTTTCCTTTTTTTTTTTTTTTTTTTTCCTTCTTCCTGCCGCCTACGGCTTTCCTCCTTTTTTTTTTTTTTTTTTTTTTTTACGATAGGACCAACAAATATATATATATAGAATGATAGAGATATAGCAAGATCAAGATCTAAAGTCTAAATAAGAGATCAACAACGAAGAACCCTAAAATTTAAAGCAAACAAACCCTAAGATGGAATTTATTTTTTTTTTGAAAAGAAAAAAAAAAATAAGAATACAAAATCCTAATGATGCAAGTTCTAGACTCAATGAAAAAAAAAAAAAGGCAAGACAAAAATATACCCAATCTAGAGCCTAGGCTCTGATACCAAATGATGTGAAACCCTAGGGTTTGCAGATTAAAAACCCTTCCACTTAAGGAGGACCCCCAATTGTCAAAACCCTAAAACCCCAAATCGATTTAAAATCAACCCCAAGGGAAGAGATAGATTGGAATTACCTTGATGATCAAAGATCCAAGATAAGGAAGACAGGTACTTACCTAGGATTCGAACACTCCACAAGAAGGATGATCAGACCTACCTGAATGTTCTGGTTTGCAACCCTAGTTCAAGAATTGCAAAGGAGAAGATGAGCTCTCAGTCATCACAAAAGCAAAACTGCTCAAATTTCATTCTGTCAAATTCATTCGTCAACAACCTAATGGTGAGGCTTTATATGACCTCCCAATTAAACCCTAAATGCCACATCATTGGCTACATAAAAAAAAAGACGAAGATACCCCTAATTAATATTCTCTAAACAAGATAAAATTGGAAAATAATAAAATTACATCAAAATTCAAAAATAAAATGTGGATCATAATTTGAAGTCCCTGGGCGGTTCATATCCCTCTTATTTCAGGTTTACGTGTTACAACTCCTCTTATCCCATGGACTGAGAAAACTAAGGAATCTTCATTGCTTTTTAATTATGAAAGGCAGGAAGCTGGTTCTTTGGAGGGGAGAGTTAGTTCTCGTTGATTATTCTCTCGTGGAATGTGAGGGAGATGCTTGGGTTCCCTGGCATGAAGAATTGTTGCTAAAGATACTTTGCTCAAGTTTAATCTTGACTTTGCCATTTTCCTAAAAAAGCTGAAGTCCATTGATAAGAGGCTTATCAAGTTCATTTGGAGTTCCATAGGTGTTGCGTGGACTTCTTATAATGTTGTGGGTTCCTCTTGTGGCATAATTATTTTCTGGAAGAACCCTTTTGTTTGTGTTACCCAGGTGGTAAAAGGTTTGTTCTCTCTATGCCATTGGTTATGACTGATATAGTTTGTTGGTGGCTCTCATGCGTCTAAGCCAGCAGGTAGAAGGGATAGACACAAGTTGTAGACGCTATATGACTTGCAAGGCTAGTCCCTTGTCTTTGACATTGATATAGAAAGCATGTTGTTGGCGTTCTTTAAAGGCATTTATACAAAAGAGGAAACCTTAAAGACTCCCTTCTAACTTATCTTGGGATCTTATTTTGGATGTAGATGGTGATTACCTTGAAAGGCCTTCTTTGGAGGAGATTAATTGGGTTGTGGACAACTTGGGAAACAACAAAGCCACCAGTTTGAATGGTTATATTGTCCATTTTTCCAGAAAGGGGTGGACCATGTTTAAAATTGATTTCTTGGACGCATGCCTAGACTTCTTCCAGAAAAATGTTGATGAATTAATGAGGCTTTCATAGCTCTAATTCCTAAAAGAGAGAATGCTTTCAGGGTGGTTGAGTATATACCTATTAATCTCTCTACAATCTACAAACTTTTGATTGAAGTCCTTGAGCGACTTAAAGAAGTCCTTCTTTGTTCCATTTCTGCTAGCCAATTGTATAAGGAAGGACTCCTTTAAGGTGGAAATGCAAAACAAGGGAAGGGATAATTTTAAATCTTGATATTTAAAATGCCTATAGATTTCTTTGATAGTGTCCTAGCTACTAAAAGTTTTGGCAATAGGTGGAGGTGATGGATGTATGATTGTATCGCTAGTGTCACCTATTCTATGATAATTATCGGTAGATCAATTAGGAGGATTAAGGCTTCTAGAGGACTTCCCTCTTTCCACTTTTCTTTCCTTCTAGTTGTAGTGGTTGATTACTTTAGCAGGCTGGTTGAAAAGAGAATCAGCAACAATCTTATTGCGGGGTATTGAGCTAATCTTATGGCGTTCGTATTGCAAATCTTCAATTCACTTATGTTATGATACCCACATTGGTTTTCCTTGTGGTGGATGAGGAGAAAATTCTTAACCTGCACAGTCATGGACACACGACATGGAACAATATGTCACCGACATGATGGCACGTCAATTTCTAAAAATGTAGGATACAAACACATTAGGGACACAATTTTTTATTATTATTTTTTAAAAGAATATACTTGTATATATTGATATATTTAAAACTTCAAAGCAGATAAAATGTGTAAATTTAACATAAAAGAAAGAATCTACTTCACTAAGAATATAAAAATTAAGTCAATTGAATGTTTTTTTTAGAGGTTGCAATTGTAGCAATCTTTTAGGCCATTGCAGTATATAAATGGGCTCTCATATGGGCTTTTTCTTATTTGTGAATGGGTAGCCACAACAGCGACCTTTTTTTTGGTTTTTTAAAGAAAACTTGTCATTATTATTTTTAGAGGGATGTAACCACATGTTTGGATGTGTCCATGACATGTCTGAACGTGTCTGAAATTCCAAAAAAAAATGCAGACACTCTTTTTTGCGAGTTAGATCCATGTCCAGCACATGTTCAAACATATCTTAAACGCAGTGTCCGTGTTTCCATGAAAGCTTTTGAAGCAGTTTCTAGTCTCAAGATTAACCTTTTGAAGTCATTGGTGGTAGGTGTCTTTGAAGAGACAAGACAATTAGGTTGATTTATGTGGGGTTGTAGGGTGGCCTCTGGTCCTTTGACTTGGGGCTTCCTCCTAGAGATAATCCAAGATCCTTGTGCTTTTGGAACCCCATTATTCAGAAAATTGAAAGAGGTTGAGTTTTCGCCAATGTTTTAAAAGAGATAGCTTACACTTATTCAAGCTGTTCTTCTGACCTTGCCTACTTATTTTCAATTAGTTCTCTCAGTCTCCTCTTCAATCACTTTAAAATTGATAGATTGGTGAGAAAATTTTCTTGGGAAAATGGGGCTTCTTTGGATGGTGGTTCTCACTAAATTATCTAAAAGATTACTTCCTTGCTACAGAATCGGGGGTGGGGGTGGGTGTGGGAGTTGATATTAGCATAACTAAGGAAAGCCCTACTGGCTAAGTGGCTTTGGCGTTTTGGTAATGAGCCTTCTGACTTCGGAGAAAGGTGCTTGGTGGCTCCTTAAACTCAGTAAATTGAACTGCCTCAAGAGCCTATGGACAAATCTTATTTAGATGGAGGTCCTGTTCAATAGCCAATTTGAAGCTAAAATTGTGGATGGAAGTGCTATGTTTTTTTGGTTGGATGATTGGTGTGGTCAGGGTAGGCTCACGGACCTTTATCCCAGATTTTTCCCCATCTTTCTACTTAAAAGATGCCGAAGGCTAAGGATGTTTGGAATAGTAGCTGGAACTTTCTTTTCAAGAGACCTTTTTTGTTCACAGGGAGATGGAGGAGTGGGAGGGCCTTATGAGAAGCCTTGACAGTAGGAAACCCTCTCATGGGAGAGATCATAGAGTCTGGAAGCCGGAGAGTTGTGGCTGTTATACTATGAAATCAAGGAGAACTTGTCCTTCCAGCTCTCTTTTGTAATTACCTTTGGAGTCTCAAGGTCCCTATGGAGTGTAAAGTTTTCTTCTGGTTGTTCTCGGTGGCCTTCATACCAATGATAAAATTCAAAGTAAAAATTGATAGCAACCAACAAATAATTTAGTGAAAATTAGTGTGTAAAGGTTTTAACAATTAAGCAGATGATATTTGACAATAGATAAAGTTGTCAACACTTTATTAATGATCATTGAGAGATTTTATAAATCATTGATAATTTAACAAGATAATATTAATAAACAACTTATAACTATGGTCGTTTTATTAGTATATAAAAAATATTAATTCAAATAGGCCATGACCATAGTTATACGGTTTTATAGGTTTTAACTATGTTACCCTTTGACAAACTATACTAATTATTTACAAATGTGTTTATACTCAATTTATTATAAAGCACATGAATACAATGATATAATCTTAAATTGCTTTGTCTATATATTTGTTGAACTTGTGGCATTTGACCATTAGTTAAAAGACTACATTATTACTATAAATAATCATTATTATATCTTTTTTTGTAATTCTAAATTATGGTTACATTACCCTAATGACTCTAATATATAGGGTTATCATTAATTACTTATTAGATTAACTTAAATTATAATATAATATAATTAGATTATATTATGGTTAAAACATAAAAAGTTCCATTTATAATCATTATTATAACAGACAAACTATTATAACAGACAAATTTAAAAAATACAGTAAAGTATCCCAAGTAATTTGAGGGACTTGAACACCTTCCCTCTTGAGCAAGCTAAATCTCAAACAACTAAACAATTGCTTGATTTTACCTCAAAATTCATTCTAGTTATGGTTGCCACTACAATTTTCTTGCTAATACATAATATGCTCTTAATTTTCCTGATATTTTTCTACTAATATTTCTAATATTACTCCACCCTAAACCACCTTGTCCTCAAGGTTTGATTGATCAACGGGTTTTCTTGAAGCAAAGTAAAAATTTGTAGATGGGGAAAATCCATAAAAAGGTGACAACCTTTCTTCCCCTCCTTTTATTTTGCTTCTTTCTTTTTTTCCTCTCTCACTTATTTTTCTTTTTTAATTTAAAATATAGAATTCTCTACATGCCTCTCAACCTTCTTACTCCTTTTTAGTCCAAGATTTAGAAAGTAAGCAAAAGTTCCACTCCTGAAGATAGGTTTGATTGTTGGTTCCCAAGTAGGCTTAGAAGTCCACAAAAACATCGAATCAAGCAACTTGGAGATCTATGCCCAAGAGATCAGCAAGTTAATTGAGGGAGTTTGATGTTTGGGGCAAAAGAAAGACTGAGCATGCATATCAGGACATTGTCGGATCACCCTTTATCTCCAGCATGAGCTGGGGTCAATCCCTTGTCGCATTTCTCTACACCAAAGTCTGATCTGTATGATGGATTAGGTGACCCTATCGACCATTAGTTTCATTTTTGGTAACTTAAATCGGCCATTTGCATCCCAAATAATGATACACATGCATTAACTCGTCCATGCCTCAAGCCTTAATGGATTACCCATTGGGCGGTTGAATTGGCTGAAAGAGGAATTCATAAGAGATTTACTGAGTTATCTCGAGTCTTCACTTGAAAATTTGCAATTAGTCACAAGCACGACAAGGAGATATTCAACATGTTTAATGTCTTCCAAGAAGAAAATGAAAACCTGAAAGATTGCATGAAACACTTCAACAAAGCAAATTGCAAGGTGGTTAACTGCAATGACCATGTGTAAGTGCTGCCTTTAGGTGCGATTTTTTTCCAAGTATGGATCTCTTCCACTCTCTTGCTAAGTTGCACCCTGCCAACTTGGAGGAGATGTACCTTGCAGCAAGAAGAGTTAGCCTCTAGAAGAGCCCGAATCATACAGAAACAGAGGAGTCTAGTCAAGGCAAAGGTTCAGACAAGCTATATATTCATGAGCGTGGGGGCCAATTTATGCGCACCTCGGCTAATTTCACGGGACAACTATTTGACCCTACAACATTTAGTTGTCAAGAAACTTGTAGGATTTTAATATCTTTAGTAGGTGACCACCACGAAGTTTGAACCCATTTGCCAAAGTTCCTTTACTTTTTCACACGCTTCAATGCCACTAGGCCAACGTATGGTGGTTGAGAAGCCATATAGATTAATGAAATAGAGAAGGAATGACCAAATAGGTAAGCTCTGTCTTGTGCCACTCAACTTAACATTTCATATGCTAACCTCATCGCCTAGGCAGAGAGTATGTTAGGTGGCCAAGATGGTTGGATGCTAATCATTCTCGCATAGTATGTGGGTTCTACTACAAATTCCGTAGAGGTATGAGCTGAAACAAATGATTGCCCTGTTTTGAAGTGAGAAGTAGAATGTTTATGATTACAGTGTTTTGAAGTGGGCATGAAACAGTATTTGCTATGCTAAAGGGCGACAGAAGACTTAAATCATATGCTATGGAGCCATGAAGGGATATGATAGGAGGAGGTGCTTATCAATCCTCCCTTTCGTAACAGTGGTTGGTTTTGTTGGTAGGCTAAATAAAAGAATTTCCAAGGGATCAGAGGGATCTTGGGTATTTCTTACAAAATTTTTTAGTTTGTTTTGTTTTGTTTTGTTCTTTTTTTTGTGTTGTGATTATCATTTATTTATGATCCTTAACAATAGCTTGAGCCGTTTTTTGTAATTGTTTTGTTTTGTGGACTACTAAGTTTGGGTTTGTTTTTCTTGTAGGCTTTTTCTTTTTAAAATTTATTTAACTTGATGAAAGCTGGTTTCTTATATATATATAAAACTAATAAGCATTTTTTAGCACTTCATTCAGTAGATTATAGAATGATTGTGGATGCATAGCTCTCTGACTGTATTTTTACTACTCTAGTTGATAAGTCCTCTCTTTCCATTTGTTTTCTGTATACACAAGAATTCGTTTAGGTAGTTTAGAATTTATTGTTGTTGCAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAATTTGCAAGCTACATACAGCGGATTCCACTTTGTAAACCAAGACAATGTTTTCAAGGTTCCTATTATGCGTTTTTGTTTTTGCTTACTTTTTATAAACTCAGAAAGCTCCATAAGATATTGCTTGACATGCTTGTTGGCTGTCAGGTCTGCGATCAACCTCATCCACTGCATGTGAAGAATGTGGTGCGTAATGTGCTTGAAGGTAAATTTGATGATGCTTGTGCAGGTCTGAAGCAACTCTACGACTTGGGCTATTCTCCCACCGACATAATAACCACCCTTTTCCGTATCATTAAGAACTATGATATGGCTGAATATCTGAAACTGGAATTCATGAAGGTACGTTAACAACCCGAGTCATCATTTGCCATACCTGAGTTCTGAGTAGCTAAGTTACTCACTCTTTTGATGAATTTACAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGTGGTCTCTTGGCCAAGCTTTCCGTTGTTCGCGAGACGGCCAAAGCGCCATGA

mRNA sequence

ATGGCGTCTTCTTCTTCTGGCAACAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTGGGCAACGAAGATGCAGTTTCAAGGCTCCAAGTTATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAAACGACCAGTATTCTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGAGGCTGTACTGGAGCTCAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAAATGTTTGCCCAAAAGAAAGTTACTTTACCTCCTGGTCGACACAAAGTGGTCATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGAACAATGGAAATATATTCAAACACAACTCGTTTTGCCCTTGCATGTAATACCTCTTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCGATTGTCCGATTTTCAAGATTAACAGATCAGGAGATTCTTGGTCGCCTAATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAATTTGCAAGCTACATACAGCGGATTCCACTTTGTAAACCAAGACAATGTTTTCAAGGTCTGCGATCAACCTCATCCACTGCATGTGAAGAATGTGGTGCGTAATGTGCTTGAAGGTAAATTTGATGATGCTTGTGCAGGTCTGAAGCAACTCTACGACTTGGGCTATTCTCCCACCGACATAATAACCACCCTTTTCCGTATCATTAAGAACTATGATATGGCTGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGTGGTCTCTTGGCCAAGCTTTCCGTTGTTCGCGAGACGGCCAAAGCGCCATGA

Coding sequence (CDS)

ATGGCGTCTTCTTCTTCTGGCAACAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTGGGCAACGAAGATGCAGTTTCAAGGCTCCAAGTTATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAAACGACCAGTATTCTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGAGGCTGTACTGGAGCTCAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAAATGTTTGCCCAAAAGAAAGTTACTTTACCTCCTGGTCGACACAAAGTGGTCATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGAACAATGGAAATATATTCAAACACAACTCGTTTTGCCCTTGCATGTAATACCTCTTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCGATTGTCCGATTTTCAAGATTAACAGATCAGGAGATTCTTGGTCGCCTAATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAATTTGCAAGCTACATACAGCGGATTCCACTTTGTAAACCAAGACAATGTTTTCAAGGTCTGCGATCAACCTCATCCACTGCATGTGAAGAATGTGGTGCGTAATGTGCTTGAAGGTAAATTTGATGATGCTTGTGCAGGTCTGAAGCAACTCTACGACTTGGGCTATTCTCCCACCGACATAATAACCACCCTTTTCCGTATCATTAAGAACTATGATATGGCTGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGTGGTCTCTTGGCCAAGCTTTCCGTTGTTCGCGAGACGGCCAAAGCGCCATGA

Protein sequence

MASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSVVRETAKAP

Homology

[Close]

BLAST of Sgr022040.1 vs. NCBI nr
Match: XP_022152824.1 (replication factor C subunit 2 [Momordica charantia])

HSP 1 Score: 653.7 bits (1685), Expect = 8.7e-184
Identity = 327/332 (98.49%), Postives = 330/332 (99.40%), Query Frame = 0


Query: 1   MASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60
           MASSSSGNSSSYDMPWVEK+RP+KVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK
Sbjct: 1   MASSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of Sgr022040.1 vs. NCBI nr
Match: XP_038905731.1 (replication factor C subunit 2 [Benincasa hispida])

HSP 1 Score: 644.8 bits (1662), Expect = 4.0e-181
Identity = 322/330 (97.58%), Postives = 326/330 (98.79%), Query Frame = 0


Query: 3   SSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62
           +SSSG+SSSYDMPWVEKYRPS V DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 2   ASSSGSSSSYDMPWVEKYRPSTVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61

Query: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEAD
Sbjct: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKMVILDEAD 121

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV
Sbjct: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVK 242
           VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLHVK
Sbjct: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 241

Query: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
           NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301

Query: 303 MRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           MRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Sgr022040.1 vs. NCBI nr
Match: XP_008448956.1 (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 643.7 bits (1659), Expect = 9.0e-181
Identity = 320/330 (96.97%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 3   SSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62
           +SSSG+SS+YD+PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61

Query: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV
Sbjct: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVK 242
           V+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLHVK
Sbjct: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 241

Query: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
           NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301

Query: 303 MRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           MRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Sgr022040.1 vs. NCBI nr
Match: KAG6577570.1 (Replication factor C subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 641.3 bits (1653), Expect = 4.5e-180
Identity = 319/332 (96.08%), Postives = 326/332 (98.19%), Query Frame = 0


Query: 1   MASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60
           MASSS  +SSSYDMPWVEKYRPSKVADIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+ VLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDACA LKQLYD+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332

[Close]

BLAST of Sgr022040.1 vs. NCBI nr
Match: XP_022923473.1 (replication factor C subunit 2 [Cucurbita moschata])

HSP 1 Score: 639.4 bits (1648), Expect = 1.7e-179
Identity = 318/332 (95.78%), Postives = 326/332 (98.19%), Query Frame = 0


Query: 1   MASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60
           MASSS  +SSSYDMPWVEKYRPSKVADIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+ VLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDACA LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332

[Close]

BLAST of Sgr022040.1 vs. ExPASy Swiss-Prot
Match: Q9CAM7 (Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 1.4e-173
Identity = 302/331 (91.24%), Postives = 318/331 (96.07%), Query Frame = 0


Query: 2   ASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SSS+     Y+ PWVEKYRPSKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 3   SSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 62

Query: 62  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLG NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 63  TSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 122

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGRL+
Sbjct: 123 DSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLL 182

Query: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHV 241
           VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQ+NVFKVCDQPHPLHV
Sbjct: 183 VVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHV 242

Query: 242 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 243 KNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 302

Query: 302 HMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 303 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Sgr022040.1 vs. ExPASy Swiss-Prot
Match: Q7XRX1 (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 PE=2 SV=2)

HSP 1 Score: 585.5 bits (1508), Expect = 3.8e-166
Identity = 286/330 (86.67%), Postives = 315/330 (95.45%), Query Frame = 0


Query: 2   ASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SS+   + +YD+PWVEKYRP++VAD+ GN DAV+RLQ IARDGNMPNLILSGPPGTGKT
Sbjct: 5   SSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKT 64

Query: 62  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSIL+LAHELLGP+Y+EAVLELNASDDRG+DVVRNKIKMFAQKKVTL PGRHK+VILDEA
Sbjct: 65  TSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEA 124

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL+DQEILGRLM
Sbjct: 125 DSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLM 184

Query: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHV 241
           +V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGF FVNQ+NVFKVCDQPHPLHV
Sbjct: 185 IVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHV 244

Query: 242 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+V+NVL+GKFD+AC+ LKQLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETGFA
Sbjct: 245 KNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFA 304

Query: 302 HMRICDGVGSYLQLCGLLAKLSVVRETAKA 332
           HMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 305 HMRICDGVGSFLQLSGLLAKFALVRETAKA 334

[Close]

BLAST of Sgr022040.1 vs. ExPASy Swiss-Prot
Match: Q05B83 (Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.7e-127
Identity = 219/320 (68.44%), Postives = 267/320 (83.44%), Query Frame = 0


Query: 3   SSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62
           S + G++  Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 23  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82

Query: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SIL LA  LLGP  K+AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 83  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RL+ 
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVK 242
           V++ EKV Y  +GLEAIIFTA GDMRQALNNLQ+TYSGF F+N +NVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262

Query: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322

Query: 303 MRICDGVGSYLQLCGLLAKL 323
           M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342

[Close]

BLAST of Sgr022040.1 vs. ExPASy Swiss-Prot
Match: P35250 (Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3)

HSP 1 Score: 455.7 bits (1171), Expect = 4.6e-127
Identity = 218/320 (68.12%), Postives = 268/320 (83.75%), Query Frame = 0


Query: 3   SSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62
           S + G++  Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 25  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84

Query: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SIL LA  LLGP  K+A+LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 85  SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 144

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMT GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD +IL RLM 
Sbjct: 145 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMN 204

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVK 242
           V++ E+VPY  +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N +NVFKVCD+PHPL VK
Sbjct: 205 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 264

Query: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 265 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 324

Query: 303 MRICDGVGSYLQLCGLLAKL 323
           M+I +GV S LQ+ GLLA+L
Sbjct: 325 MKIAEGVNSLLQMAGLLARL 344

[Close]

BLAST of Sgr022040.1 vs. ExPASy Swiss-Prot
Match: Q641W4 (Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 1.0e-126
Identity = 215/317 (67.82%), Postives = 266/317 (83.91%), Query Frame = 0


Query: 6   SGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSIL 65
           S  +  Y++PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I++GPPGTGKTTSIL
Sbjct: 23  SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82

Query: 66  ALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMT 125
            LA  LLGP  K+AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT
Sbjct: 83  CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142

Query: 126 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQ 185
            GAQQALRRTMEIYS TTRFALACN S KIIEPIQSRCA++R+++LTD ++L RLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202

Query: 186 AEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVKNVV 245
            EKVPY  +GLEAIIFTA GDMRQALNNLQ+T+SGF ++N +NVFKVCD+PHPL VK ++
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262

Query: 246 RNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 305
           ++ ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322

Query: 306 CDGVGSYLQLCGLLAKL 323
            +GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339

[Close]

BLAST of Sgr022040.1 vs. ExPASy TrEMBL
Match: A0A6J1DH57 (replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE=3 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 4.2e-184
Identity = 327/332 (98.49%), Postives = 330/332 (99.40%), Query Frame = 0


Query: 1   MASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60
           MASSSSGNSSSYDMPWVEK+RP+KVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK
Sbjct: 1   MASSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of Sgr022040.1 vs. ExPASy TrEMBL
Match: A0A1S3BLV0 (replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490969 PE=3 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 4.4e-181
Identity = 320/330 (96.97%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 3   SSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62
           +SSSG+SS+YD+PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61

Query: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV
Sbjct: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVK 242
           V+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLHVK
Sbjct: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 241

Query: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
           NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301

Query: 303 MRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           MRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Sgr022040.1 vs. ExPASy TrEMBL
Match: A0A6J1E9R2 (replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=3 SV=1)

HSP 1 Score: 639.4 bits (1648), Expect = 8.2e-180
Identity = 318/332 (95.78%), Postives = 326/332 (98.19%), Query Frame = 0


Query: 1   MASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGK 60
           MASSS  +SSSYDMPWVEKYRPSKVADIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+ VLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDACA LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           AHMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332

[Close]

BLAST of Sgr022040.1 vs. ExPASy TrEMBL
Match: A0A0A0L763 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV=1)

HSP 1 Score: 639.0 bits (1647), Expect = 1.1e-179
Identity = 317/330 (96.06%), Postives = 326/330 (98.79%), Query Frame = 0


Query: 3   SSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62
           +SSSG+SS+YD+PWVEKYRP+KV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 2   ASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 61

Query: 63  SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122
           SILALAHELLGPNYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121

Query: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV
Sbjct: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181

Query: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVK 242
           V+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQDNVFKVCDQPHPLHVK
Sbjct: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVK 241

Query: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302
           NVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 242 NVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301

Query: 303 MRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           MRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 302 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Sgr022040.1 vs. ExPASy TrEMBL
Match: A0A6J1HQ24 (replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 9.1e-179
Identity = 316/331 (95.47%), Postives = 324/331 (97.89%), Query Frame = 0


Query: 2   ASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SS S +SSSYDMPWVEKYRPSKVADIVGNE+AVSRLQVIARDGNMPN ILSGPPGTGKT
Sbjct: 3   SSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKT 62

Query: 62  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLGPNYK+ VLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 63  TSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 122

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM
Sbjct: 123 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 182

Query: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHV 241
           VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGF FVNQDNVFKVCDQPHPLHV
Sbjct: 183 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 242

Query: 242 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VRNVLEGKFDDACA LKQLYD+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKE GFA
Sbjct: 243 KNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKEIGFA 302

Query: 302 HMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 303 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Sgr022040.1 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 610.1 bits (1572), Expect = 1.0e-174
Identity = 302/331 (91.24%), Postives = 318/331 (96.07%), Query Frame = 0


Query: 2   ASSSSGNSSSYDMPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 61
           +SSS+     Y+ PWVEKYRPSKV DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 3   SSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 62

Query: 62  TSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 121
           TSILALAHELLG NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 63  TSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 122

Query: 122 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 181
           DSMT+GAQQALRRT+EIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRL+DQ+ILGRL+
Sbjct: 123 DSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLL 182

Query: 182 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHV 241
           VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF FVNQ+NVFKVCDQPHPLHV
Sbjct: 183 VVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHV 242

Query: 242 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 301
           KN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 243 KNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 302

Query: 302 HMRICDGVGSYLQLCGLLAKLSVVRETAKAP 333
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 303 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Sgr022040.1 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-54
Identity = 127/312 (40.71%), Postives = 170/312 (54.49%), Query Frame = 0


Query: 15  PWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 74
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 75  N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 134
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 135 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQA 194
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 195 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVKNVVR 254
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 255 NVLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 314
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 315 RICDGVGSYLQL 316
           R+ DG   YLQL
Sbjct: 310 RLVDGADEYLQL 321

[Close]

BLAST of Sgr022040.1 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 206.1 bits (523), Expect = 4.5e-53
Identity = 116/322 (36.02%), Postives = 184/322 (57.14%), Query Frame = 0


Query: 15  PWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 74
           PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99

Query: 75  NYKEAVLELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGRHKVVILDEADSMTTGAQQALR 134
            Y+  +LELNASDDRGIDVVR +I+ FA  +  +L     K+V+LDEAD+MT  AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159

Query: 135 RTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVP 194
           R +E Y+ +TRFAL  N  +KII  +QSRC   RF+ L    +  RL  V++AE++    
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219

Query: 195 EGLEAIIFTADGDMRQALNNLQATYSG--------FHFVNQDNVFKVCDQPHPLHVKNVV 254
            GL A++  ++GDMR+ALN LQ+T+             + +++V+     P P  ++ + 
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279

Query: 255 RNVLEGKFDDACAGLKQLYD-LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMR 314
             +L   FD+    + ++    G +  DI+  +   I    M   ++++ + +      R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339

Query: 315 ICDGVGSYLQLCGLLAKLSVVR 327
           +  G    LQL  +++  +  R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361

[Close]

BLAST of Sgr022040.1 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-51
Identity = 125/312 (40.06%), Postives = 166/312 (53.21%), Query Frame = 0


Query: 15  PWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 74
           PWVEKYRP +V D+   E+              P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 75  N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 134
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 135 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQA 194
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 195 EKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVKNVVR 254
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 255 NVLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 314
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 315 RICDGVGSYLQL 316
           R+ DG   YLQL
Sbjct: 310 RLVDGADEYLQL 309

[Close]

BLAST of Sgr022040.1 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-51
Identity = 124/311 (39.87%), Postives = 167/311 (53.70%), Query Frame = 0


Query: 15  PWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 74
           PWVEKYRP +V D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG- 69

Query: 75  NYKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTTG 134
                VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT  
Sbjct: 70  -----VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 135 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAE 194
           AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ +   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 195 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFHFVNQDNVFKVCDQPHPLHVKNVVRN 254
            +    E L  +   + GD+R+A+  LQ+    F                PL V N +  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 255 VLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHMR 314
             + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       R
Sbjct: 250 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKR 309

Query: 315 ICDGVGSYLQL 316
           + DG   YLQL
Sbjct: 310 LVDGADEYLQL 314

The following BLAST results are available for this feature:

BLAST of Sgr022040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152824.1	8.7e-184	98.49	replication factor C subunit 2 [Momordica charantia]	[more]
XP_038905731.1	4.0e-181	97.58	replication factor C subunit 2 [Benincasa hispida]	[more]
XP_008448956.1	9.0e-181	96.97	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo]	[more]
KAG6577570.1	4.5e-180	96.08	Replication factor C subunit 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022923473.1	1.7e-179	95.78	replication factor C subunit 2 [Cucurbita moschata]	[more]

BLAST of Sgr022040.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAM7	1.4e-173	91.24	Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1	[more]
Q7XRX1	3.8e-166	86.67	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 ...	[more]
Q05B83	2.7e-127	68.44	Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1	[more]
P35250	4.6e-127	68.13	Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3	[more]
Q641W4	1.0e-126	67.82	Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1	[more]

BLAST of Sgr022040.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DH57	4.2e-184	98.49	replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE...	[more]
A0A1S3BLV0	4.4e-181	96.97	replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349096...	[more]
A0A6J1E9R2	8.2e-180	95.78	replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=...	[more]
A0A0A0L763	1.1e-179	96.06	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV...	[more]
A0A6J1HQ24	9.1e-179	95.47	replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 ...	[more]

BLAST of Sgr022040.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63160.1	1.0e-174	91.24	replication factor C 2	[more]
AT1G21690.1	2.4e-54	40.71	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	4.5e-53	36.02	replication factor C subunit 3	[more]
AT1G21690.2	1.1e-51	40.06	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	1.4e-51	39.87	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 46..178 e-value: 3.0E-12 score: 56.7
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 236..321 e-value: 1.7E-20 score: 73.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..171 e-value: 1.7E-57 score: 195.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 12..234
None	No IPR available	GENE3D	1.10.8.60		coord: 172..235 e-value: 3.0E-20 score: 73.5
None	No IPR available	GENE3D	1.20.272.10		coord: 236..328 e-value: 8.1E-30 score: 104.6
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 7..330
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 7..330
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 171..233 e-value: 3.6896E-19 score: 77.9545
None	No IPR available	CDD	cd00009	AAA	coord: 29..166 e-value: 3.2066E-26 score: 99.9131
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 50..168 e-value: 4.7E-15 score: 56.2
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 235..326

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr022040	Sgr022040	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr022040.1.exon7	Sgr022040.1.exon7	exon
Sgr022040.1.exon6	Sgr022040.1.exon6	exon
Sgr022040.1.exon5	Sgr022040.1.exon5	exon
Sgr022040.1.exon4	Sgr022040.1.exon4	exon
Sgr022040.1.exon3	Sgr022040.1.exon3	exon
Sgr022040.1.exon2	Sgr022040.1.exon2	exon
Sgr022040.1.exon1	Sgr022040.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr022040.1	cds.Sgr022040.1_7	CDS
cds.Sgr022040.1	cds.Sgr022040.1_6	CDS
cds.Sgr022040.1	cds.Sgr022040.1_5	CDS
cds.Sgr022040.1	cds.Sgr022040.1_4	CDS
cds.Sgr022040.1	cds.Sgr022040.1_3	CDS
cds.Sgr022040.1	cds.Sgr022040.1_2	CDS
cds.Sgr022040.1	cds.Sgr022040.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr022040.1	Sgr022040.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity