Sed0027815.1 (mRNA) Chayote v1

Overview


Name	Sed0027815.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	snRNA-activating protein complex subunit 4
Location	LG08: 2356726 .. 2358646 (-)
Sequence length	534
RNA-Seq Expression	Sed0027815.1
Synteny	Sed0027815.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGCGGCGGCGGCGGCGGCGACGATTCGCTCACCGCCGGCGAGGAAGACGACGACATGGAAGTCCTCAGAGGAGCCTGCCGGCGTTAATCCTGAGGATTACATTAATTCTGTCGCCGGAGATGATCCAGATGATGTTGATGATTTTCAACTTGTTCGGAATATTCAGAAACAGTTCTCGATTGCCGACGATGATCAGCCGTTGAGTGCTCTCCCACCGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTCGGATTCAGCAGCGCTTTGGTGCGTATGGAAGCGGTACGTTTTTTTTTTCATAATTGTAAGGATTTGCTTCTAGAAATGTCATGATTGAATTGGTTGTGTTATGACGCTGCTTGTGATGATCATTTACTCGTTCTGAGCTACCGAGTATGTGACATTTTTCCAATGGCTTTGGGTTACTTGGGAAGGATTGTACATTCCTCCACCATTCTTGGTCAAGTTTATGTTTCCTTATTGTGATTCTAATGATGATGTTGGTTAATGTTTCTTCAACTTTCAAATTGCTTCCTTAAGTGCATCCTATAAAGCACGGACACACCATTTTGGGCTGAGAATCTGTATCATTTACGTTTCAGACACAATTACGGCATACGTCAATTGAAGTATTTTTTTTTTGGCATATTGGATACAGGAAGATACGTAGAAGAAACAGCCAGGATATATACGAATGATTTTGCATTTTTTAAAAGCCATTTTTACAAAACCAACCCATTATATTCACCAAATTAAACTCATTTTAGTGAGTGGAGCCCATTATTCTCATTTTATTGAACCCATTTTATTGCTACTAAAATGAAATTCAATTTCATATGTTTTATTTAGTAAAATTATAAAAAGAAAAAAACTAACCTAAATTCAATTTCATACATTTTTTTTAGTAAAATTTTCGTATCTCAAAAGTATTCGTATCTTAGTTTTTAAGAAATTGACGTATCATCATGTCGTGTCGTATCCGTATCACGTATCTGTGTATGTGTCCGTGCTTCATAGAGTGCATCTATCCAGAATTGTTGATGTGATCATCTTTTGTGATTTTTACTTTCTTATCATTTCTGAGATTCTTTAGTATTCTTGTTTTATCTTTATTTCTTGCAAGAACTTGTATATTTAGTCTTTAGTTTACCCATAGTTTTTATTATTTAGTCTTTAGAACTTGTATAAATATATATATGTGTGTGTTGCAACTAATTTCACTTAAGCTCTAAATATTTTGCGTCTTTGTGTTCACTTCGACTAATTTAACCGGACAGCCATTTAACATTACTGCATTTGGTTGTCAAGTAAAATGGTAGGAAATTGTTCTTGGTAGGTGGGTCACCTTGAACTCATTTCCTCTAACCACTTTTATAATTTTCAAGGTTCTTATTGACAACTAGGCCAACCCATCATGGTTCTCAACAAAGTTGTAGATTTAGAAAAAAAATTGTTTTATTATTTCTTACAGTGTATTTGAAGTTTCCTTTCAAGGTTTTTCCTCTCACCATGTTCTAAAATATGTAACTTTTATGCAGGTACTTTGAGCAATAAACATGATCAGTCTTGTGACTTTGATGGGCCTCTCGAGATGGATTCTAACAGCACAGAGAGATCGACATCCTCAAAAAGGTACCAACATATTGTAGAATATGCAATACTAATGCTTCTTAGTAATATTTTGGTGTAAAAATGCTTCTTCCTTATATGTCGATGCTGTATATCTTTGGGTTTTATTGAGTGGCTATTATCCAATGTTGTAGGTCATCTATGCTAACCTTTGAAAAGGGAAGCATGCCAAAGGCTGCATTGTCATTTATCGATGCTATCAAGAAGAATAGGTCACAACAGAAGTTTATATGTAATAAGATGATTCATCTTGAAACTAGAATTGAGGAGAACAAAAGGCTCTGA

mRNA sequence

ATGACGGCGGCGGCGGCGGCGGCGACGATTCGCTCACCGCCGGCGAGGAAGACGACGACATGGAAGTCCTCAGAGGAGCCTGCCGGCGTTAATCCTGAGGATTACATTAATTCTGTCGCCGGAGATGATCCAGATGATGTTGATGATTTTCAACTTGTTCGGAATATTCAGAAACAGTTCTCGATTGCCGACGATGATCAGCCGTTGAGTGCTCTCCCACCGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTCGGATTCAGCAGCGCTTTGGTGCGTATGGAAGCGGTACTTTGAGCAATAAACATGATCAGTCTTGTGACTTTGATGGGCCTCTCGAGATGGATTCTAACAGCACAGAGAGATCGACATCCTCAAAAAGGTCATCTATGCTAACCTTTGAAAAGGGAAGCATGCCAAAGGCTGCATTGTCATTTATCGATGCTATCAAGAAGAATAGGTCACAACAGAAGTTTATATGTAATAAGATGATTCATCTTGAAACTAGAATTGAGGAGAACAAAAGGCTCTGA

Coding sequence (CDS)

ATGACGGCGGCGGCGGCGGCGGCGACGATTCGCTCACCGCCGGCGAGGAAGACGACGACATGGAAGTCCTCAGAGGAGCCTGCCGGCGTTAATCCTGAGGATTACATTAATTCTGTCGCCGGAGATGATCCAGATGATGTTGATGATTTTCAACTTGTTCGGAATATTCAGAAACAGTTCTCGATTGCCGACGATGATCAGCCGTTGAGTGCTCTCCCACCGGACGAGGAGGAAGACGATTTCGAGACGCTTCGTCGGATTCAGCAGCGCTTTGGTGCGTATGGAAGCGGTACTTTGAGCAATAAACATGATCAGTCTTGTGACTTTGATGGGCCTCTCGAGATGGATTCTAACAGCACAGAGAGATCGACATCCTCAAAAAGGTCATCTATGCTAACCTTTGAAAAGGGAAGCATGCCAAAGGCTGCATTGTCATTTATCGATGCTATCAAGAAGAATAGGTCACAACAGAAGTTTATATGTAATAAGATGATTCATCTTGAAACTAGAATTGAGGAGAACAAAAGGCTCTGA

Protein sequence

MTAAAAAATIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIADDDQPLSALPPDEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNSTERSTSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL

Homology

[Close]

BLAST of Sed0027815.1 vs. NCBI nr
Match: KAG7023314.1 (Myb-like protein L [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 6.3e-48
Identity = 116/165 (70.30%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN EDYIN       AGD     D DDVDD +L+RNIQ +FSIA D++PLS LPP   
Sbjct: 40  AGVNHEDYINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEKPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNST--ERSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T  ER TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVERLTSSERSSMI 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. NCBI nr
Match: XP_022987959.1 (uncharacterized protein LOC111485355 isoform X2 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 6.3e-48
Identity = 115/165 (69.70%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   
Sbjct: 40  AGVNHEDYVNPQLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNST--ERSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T  ER TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTNVERLTSSERSSMV 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFLRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. NCBI nr
Match: XP_022987958.1 (uncharacterized protein LOC111485355 isoform X1 [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 6.3e-48
Identity = 115/165 (69.70%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   
Sbjct: 40  AGVNHEDYVNPQLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNST--ERSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T  ER TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTNVERLTSSERSSMV 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFLRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. NCBI nr
Match: KAG6589626.1 (Myb-like protein L, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.4 bits (511), Expect = 6.3e-48
Identity = 116/165 (70.30%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN EDYIN       AGD     D DDVDD +L+RNIQ +FSIA D++PLS LPP   
Sbjct: 40  AGVNHEDYINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEKPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNST--ERSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T  ER TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVERLTSSERSSMI 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. NCBI nr
Match: XP_023515735.1 (uncharacterized protein LOC111779809 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-47
Identity = 116/165 (70.30%), Postives = 129/165 (78.18%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN EDYIN       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   
Sbjct: 40  AGVNHEDYINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNST--ERSTSSKRSSML 147
           DEEEDDFE LR IQ+RF AY S  LSNK DQSCD DGPL+MDS +T  ER TSS+RSSM+
Sbjct: 100 DEEEDDFEMLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSENTDVERLTSSERSSMI 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. ExPASy TrEMBL
Match: A0A6J1JK98 (uncharacterized protein LOC111485355 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485355 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.0e-48
Identity = 115/165 (69.70%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   
Sbjct: 40  AGVNHEDYVNPQLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNST--ERSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T  ER TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTNVERLTSSERSSMV 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFLRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. ExPASy TrEMBL
Match: A0A6J1JKV7 (uncharacterized protein LOC111485355 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485355 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.0e-48
Identity = 115/165 (69.70%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN EDY+N       AGD     D DDVDD +L+RNIQ +FSIA D+QPLS LPP   
Sbjct: 40  AGVNHEDYVNPQLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNST--ERSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T  ER TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTNVERLTSSERSSMV 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKF+ +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFLRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. ExPASy TrEMBL
Match: A0A6J1E6Z7 (uncharacterized protein LOC111430000 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430000 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.8e-47
Identity = 114/165 (69.09%), Postives = 129/165 (78.18%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN ED IN       AGD     D DDVDD +L+RNIQ +FS A D+QPLS LPP   
Sbjct: 40  AGVNHEDSINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSTAADEQPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNSTE--RSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T+  R TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVARLTSSERSSMI 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. ExPASy TrEMBL
Match: A0A6J1E2J4 (uncharacterized protein LOC111430000 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430000 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.8e-47
Identity = 114/165 (69.09%), Postives = 129/165 (78.18%), Query Frame = 0


Query: 28  AGVNPEDYIN-----SVAGD-----DPDDVDDFQLVRNIQKQFSIADDDQPLSALPP--- 87
           AGVN ED IN       AGD     D DDVDD +L+RNIQ +FS A D+QPLS LPP   
Sbjct: 40  AGVNHEDSINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSTAADEQPLSILPPVTA 99

Query: 88  DEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNSTE--RSTSSKRSSML 147
           DEEEDDFETLR IQ+RF AY S  LSNK DQSCD DGPL+MDS++T+  R TSS+RSSM+
Sbjct: 100 DEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVARLTSSERSSMI 159

Query: 148 TFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            FEKGS+PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Sbjct: 160 AFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKL 204

[Close]

BLAST of Sed0027815.1 vs. ExPASy TrEMBL
Match: A0A6J1C075 (uncharacterized protein LOC111007172 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007172 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.0e-44
Identity = 112/175 (64.00%), Postives = 124/175 (70.86%), Query Frame = 0


Query: 29  GVNPEDYIN--------------SVAGDDPDDVDDFQLVRNIQKQFSIADDDQ------- 88
           G NPE+Y N              S  G D DDVDD +LVRNI+ +FSIA DD+       
Sbjct: 41  GANPEEYNNPPLSPTAGAGSFGGSKPGSDSDDVDDLELVRNIRNRFSIAADDEDQALSLH 100

Query: 89  PLSALP---PDEEEDDFETLRRIQQRFGAYGSGTLSNKHDQSCDFDGPLEMDSNSTE--R 148
           PLS LP   PDEEEDDFETLR IQ+RF AY S  LSN  DQSCDF GPLEMDSN T+  R
Sbjct: 101 PLSTLPPVSPDEEEDDFETLRAIQRRFSAYESDALSNNLDQSCDFGGPLEMDSNETDVGR 160

Query: 149 STSSKRSSMLTFEKGSMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKRL 178
            TSS RSSML  EKG++PKAAL+FIDAIKKNRSQQKFI +KMIHLE RIEENK+L
Sbjct: 161 QTSSGRSSMLALEKGNLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKL 215

[Close]

BLAST of Sed0027815.1 vs. TAIR 10
Match: AT3G18100.1 (myb domain protein 4r1 )

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-11
Identity = 57/193 (29.53%), Postives = 91/193 (47.15%), Query Frame = 0


Query: 9   TIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIA-DDDQ 68
           TI+S  A      +SS  P G++           D +  DDF+++R+I+ Q S++ D   
Sbjct: 74  TIKSQLASSKDAGRSSGPPMGLS--------LLSDSESEDDFEMIRSIKSQLSLSMDVSL 133

Query: 69  PLSALPPDEEEDDFETLRRIQQRFGAY------------GSGTLSNKHDQSCDFDGPLEM 128
           P   L  DEE+D FETLR I++RF AY              G     H+   +    +  
Sbjct: 134 PPIGLSDDEEDDAFETLRAIRRRFSAYKNFDSEGKFMNDSHGKKKQVHNSDNEPSSEILS 193

Query: 129 DSNSTERSTSSKRSSM------------LTFEKGSMPKAALSFIDAIKKNRSQQKFICNK 177
            SN+ E      +S +            +     S P+AA +F+DAI++NR+ QKF+  K
Sbjct: 194 RSNTCESFPDHGKSVVTVPDSEDVQDGHMPAASSSFPEAARAFVDAIRRNRAYQKFLRGK 253

[Close]

BLAST of Sed0027815.1 vs. TAIR 10
Match: AT3G18100.3 (myb domain protein 4r1 )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 9   TIRSPPARKTTTWKSSEEPAGVNPEDYINSVAGDDPDDVDDFQLVRNIQKQFSIA-DDDQ 68
           TI+S  A      +SS  P G++           D +  DDF+++R+I+ Q S++ D   
Sbjct: 74  TIKSQLASSKDAGRSSGPPMGLS--------LLSDSESEDDFEMIRSIKSQLSLSMDVSL 133

Query: 69  PLSALPPDEEEDDFETLRRIQQRFGAY 95
           P   L  DEE+D FETLR I++RF AY
Sbjct: 134 PPIGLSDDEEDDAFETLRAIRRRFSAY 152

[Close]

BLAST of Sed0027815.1 vs. TAIR 10
Match: AT3G18100.2 (myb domain protein 4r1 )

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04
Identity = 18/39 (46.15%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 138 SMPKAALSFIDAIKKNRSQQKFICNKMIHLETRIEENKR 177
           S P+AA +F+DAI++NR+ QKF+  K+  +E  IE+N++
Sbjct: 7   SFPEAARAFVDAIRRNRAYQKFLRGKLAEIEATIEQNEK 45

The following BLAST results are available for this feature:

BLAST of Sed0027815.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023314.1	6.3e-48	70.30	Myb-like protein L [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022987959.1	6.3e-48	69.70	uncharacterized protein LOC111485355 isoform X2 [Cucurbita maxima]	[more]
XP_022987958.1	6.3e-48	69.70	uncharacterized protein LOC111485355 isoform X1 [Cucurbita maxima]	[more]
KAG6589626.1	6.3e-48	70.30	Myb-like protein L, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023515735.1	1.4e-47	70.30	uncharacterized protein LOC111779809 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0027815.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027815.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK98	3.0e-48	69.70	uncharacterized protein LOC111485355 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JKV7	3.0e-48	69.70	uncharacterized protein LOC111485355 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E6Z7	9.8e-47	69.09	uncharacterized protein LOC111430000 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E2J4	9.8e-47	69.09	uncharacterized protein LOC111430000 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1C075	2.0e-44	64.00	uncharacterized protein LOC111007172 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Sed0027815.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18100.1	1.0e-11	29.53	myb domain protein 4r1	[more]
AT3G18100.3	1.1e-05	37.93	myb domain protein 4r1	[more]
AT3G18100.2	3.5e-04	46.15	myb domain protein 4r1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0027815	Sed0027815	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027815.1-exon	Sed0027815.1-exon-LG08:2356726..2356876	exon
Sed0027815.1-exon	Sed0027815.1-exon-LG08:2357008..2357101	exon
Sed0027815.1-exon	Sed0027815.1-exon-LG08:2358358..2358646	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027815.1-cds	Sed0027815.1-cds-LG08:2356726..2356876	CDS
Sed0027815.1-cds	Sed0027815.1-cds-LG08:2357008..2357101	CDS
Sed0027815.1-cds	Sed0027815.1-cds-LG08:2358358..2358646	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0027815.1	Sed0027815.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding