Sed0027740.1 (mRNA) Chayote v1

Overview


Name	Sed0027740.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 39-like
Location	LG11: 907040 .. 910011 (-)
Sequence length	2274
RNA-Seq Expression	Sed0027740.1
Synteny	Sed0027740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTTCTCGGATTTGAGATTCCATGGTTTTTTTTAGCCATCTCCATCTCTGATTCCTCTAGGGTTTTTCTTTCTCCTTGGCGGCTAGGTTTTTTTTTAATTAATTTTTTTTTCTCTTTCATTTCCATATAAATTTATACAGCTTTCATTCATACACTTCCGCCATTGTTTCGATTTGATTCCTTCCCCCCATTGATCTCGATTCCGCCGACTTATGCGTTTTTCGGCGATGTTTTGATCATTGAAACAAACCCTTTTGTTCCCTTTGGCCAATTTGACTTCCTGTTTGTGTTCATCTTTCATTGTTCTGGCGTTTCATCACATCCATTTAAGCTTTAAGAGTTTGTTTTGTATTTTTTTTTTTGATTTTGGTTGTTTGATTCGTTGTTTTATTGGTTGAAGAGGACTGGGTTTTAGTTTAGAAGATGAATTTCATTGACAGAATGTTAAAGTGATGTACTTCTATCTTGGATGATGTTTTGATCGTTGAATCAGACCCTTTTGCTCCATTTGGGGAATTCGACTTCGATTTTGATCAATATCGTCTGTGTTCATCTTTTATTGAATCATTTAGCTTGTTTCTTGCTGTTCTGGCGTTTCATCACATTCGTATAAGCATTGGTTCTGTAAGGACTTTAGATTGAGTTTTTTGGTTGTTTGATTGATTGGTTCATTGCTTGAAGGGATTGGGTTTAAGTTAATGAGATGAGTTTCTATAACATAATGTTCCAGTGATTTACCTCTATTGTGCATGACGTCTTGATCATTGAAACAGACCCTTTTGTTCCTTTTGGCGAATTCGACTTCAGTTTTGGTTTGTGTTGTCCCTGTTCATCTGTCGTTGAATCATCTTGTTTGTTGTTCTGGTGTTTCATCGCATCCGAATACACATTGGTTCTGTAAGGGGTTTTGATTGAGTTTTATTGGTTGTTTGATTTATTGTTTCATTGATTGAAGAGGACTGAGTTTAATTTTACAAGATGAGTTTCAATGATATTCGAGGCTGTGTTATACCCCCGCCTCTGCATTCCCATGGTGCCAATGGCAATGAAACTGATTGCTGGTCTCAGTTTCCCGGGAATGATTTATTCGACACACAATCACAATTTGAGCGACGAGAGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCAATCTCCGCCTTATCCGCCGCCAAATTCCAGAGCTCACCCGCAAAATGCTCCAGTGAATAAAGGGATAAACAATATCTTCTTCAAGACAAGGATCTGTGCAAAATTCAAGCTTGGTTTGTGTAGGAATGGAGAAACTTGCAACTTTGCTCATGGTGTTGAAGACATGCGACAACCCCCGCCAAATTGGCAAGAAATTGTGGGGATACGTGAGGATGATCAACCCGTTAGCAACTGGAATGATGATCAGAAAATAATCCAGAAAATGAAGCTGTGTAGGAAGTTTTATATTGGGGAGGAATGCCCTTATGGAGAGAGGTGCAATTTTCTTCATGAAGATCCTTCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAGAGTTCAGCTATAAGTATTGGAACTACAGGAACTCCATTCATGAATGGAAGTGATTCTAGTTATTCTGAACCTATCAGAGCAGCTTCTAATTCTGTTTCTGATGCTTTTCGATCGAATGGAAATGCGAAGCCTTCATTCTGGAAGACCAAGCTATGCACCAAGTGGGAGATTACTGGTCATTGCCCTTTTGGTGAAAAGTGTCATTTTGCTCATGGCCAATCTGGTATTGAAAGCTCTCTCTCTATTTCTCTGTAATGTAATATGTAGTACTAGAATCCTGTGGAATGGAATTCAATAGTTGGTTATGTAGGTAGTGCTATCATAACATGTGAAATGGAATGTTTTTTATGAACTGAATATCATGATATGTTTTTTTTTTTTTTTTTTTTTTGTAGATTTAAGAGGTTATGAGTTTCATCCATGTTGATCACCTACCTAGGAAACAATTTTTCTGAGGTTGAAGGGTCAAGCGAGTATTGTTTTAAGTTCACTCGTTCACTCGTGCACCTAGGCAAAGTGCAGGGCTCAGGTGGTGCCTTGAGCGCCTAATGCAAAAATCCTTGCGTTTAGGGTTTATGTTCTTTATTAACTAAATCAAACAACATCCTTAGATTAATTTTTTAATAATTCCACTCCAACTAGGCTATCTGTTTTGTGAATGTTCTCTTAAGAGCTTTTTGGAATGACTTTCCAAGTGCTTAAAAACCGTTCTTAATAGACCTTTAATTTGTTCCATTCCTTTGATGCCTCCAGGTATCTGGCCTAGGGACGACCCCCAGTATAGTTGAGCGAATCTCTGATTTTCCGATATCAAAAAAAGAAAATCCTTTGATTTGCCTGGTTTTTGTGTTGTGTCCTCTGTGAATAGGTTTTGACATTGATTATACTAATTTGGGATGGTGACTGTTCTTTATGGATCAGAATTACAACTCTATCTTGGACGTGAAGGGGAAGTATCCAACACTGCCTTCAATGTACAGCCTCAAGTTGTGGCCATGGAAGCAACTTCAAGTTTGGCGACAAGTGTTCCGACCACTGCCCTCTCAGAGGGCCAGGCAAAGCCATGCTTGCTGAAATGGAAAGGCCTCAAAAAGATAAATCGGATCTATGCCGATTGGCTCGATGATTTACCTCTATCTCCAAGCTCAGTGAGCAAATTGGAGGGATGAGTACTAGTTTTGTTTTGAAGTTTGTTTGATAAGCACAATTGATTAGTTTCAATGTGGGAGTCGGGCTGGTGCTTGTTTTCTGAATCAAGGAGTGTAGCAAAAAGGTTTTTGCTGAGAGTTTATTTGGGGTATGGATAGAAAGAGAGTGAGGTACATCTTATTGTTTGTTCTCTATTGTTCATTTATTTTGTTATTTTATATTTGTTTATATCCCACAGAAAACTTGTTTGAGATTTTAATGTCATTCAATATATTCCAGCAATTTTTAC

mRNA sequence

GACTTCTCGGATTTGAGATTCCATGGTTTTTTTTAGCCATCTCCATCTCTGATTCCTCTAGGGTTTTTCTTTCTCCTTGGCGGCTAGGTTTTTTTTTAATTAATTTTTTTTTCTCTTTCATTTCCATATAAATTTATACAGCTTTCATTCATACACTTCCGCCATTGTTTCGATTTGATTCCTTCCCCCCATTGATCTCGATTCCGCCGACTTATGCGTTTTTCGGCGATGTTTTGATCATTGAAACAAACCCTTTTGTTCCCTTTGGCCAATTTGACTTCCTGTTTGTGTTCATCTTTCATTGTTCTGGCGTTTCATCACATCCATTTAAGCTTTAAGAGTTTGTTTTGTATTTTTTTTTTTGATTTTGGTTGTTTGATTCGTTGTTTTATTGGTTGAAGAGGACTGGGTTTTAGTTTAGAAGATGAATTTCATTGACAGAATGTTAAAGTGATGTACTTCTATCTTGGATGATGTTTTGATCGTTGAATCAGACCCTTTTGCTCCATTTGGGGAATTCGACTTCGATTTTGATCAATATCGTCTGTGTTCATCTTTTATTGAATCATTTAGCTTGTTTCTTGCTGTTCTGGCGTTTCATCACATTCGTATAAGCATTGGTTCTGTAAGGACTTTAGATTGAGTTTTTTGGTTGTTTGATTGATTGGTTCATTGCTTGAAGGGATTGGGTTTAAGTTAATGAGATGAGTTTCTATAACATAATGTTCCAGTGATTTACCTCTATTGTGCATGACGTCTTGATCATTGAAACAGACCCTTTTGTTCCTTTTGGCGAATTCGACTTCAGTTTTGGTTTGTGTTGTCCCTGTTCATCTGTCGTTGAATCATCTTGTTTGTTGTTCTGGTGTTTCATCGCATCCGAATACACATTGGTTCTGTAAGGGGTTTTGATTGAGTTTTATTGGTTGTTTGATTTATTGTTTCATTGATTGAAGAGGACTGAGTTTAATTTTACAAGATGAGTTTCAATGATATTCGAGGCTGTGTTATACCCCCGCCTCTGCATTCCCATGGTGCCAATGGCAATGAAACTGATTGCTGGTCTCAGTTTCCCGGGAATGATTTATTCGACACACAATCACAATTTGAGCGACGAGAGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCAATCTCCGCCTTATCCGCCGCCAAATTCCAGAGCTCACCCGCAAAATGCTCCAGTGAATAAAGGGATAAACAATATCTTCTTCAAGACAAGGATCTGTGCAAAATTCAAGCTTGGTTTGTGTAGGAATGGAGAAACTTGCAACTTTGCTCATGGTGTTGAAGACATGCGACAACCCCCGCCAAATTGGCAAGAAATTGTGGGGATACGTGAGGATGATCAACCCGTTAGCAACTGGAATGATGATCAGAAAATAATCCAGAAAATGAAGCTGTGTAGGAAGTTTTATATTGGGGAGGAATGCCCTTATGGAGAGAGGTGCAATTTTCTTCATGAAGATCCTTCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAGAGTTCAGCTATAAGTATTGGAACTACAGGAACTCCATTCATGAATGGAAGTGATTCTAGTTATTCTGAACCTATCAGAGCAGCTTCTAATTCTGTTTCTGATGCTTTTCGATCGAATGGAAATGCGAAGCCTTCATTCTGGAAGACCAAGCTATGCACCAAGTGGGAGATTACTGGTCATTGCCCTTTTGGTGAAAAGTGTCATTTTGCTCATGGCCAATCTGAATTACAACTCTATCTTGGACGTGAAGGGGAAGTATCCAACACTGCCTTCAATGTACAGCCTCAAGTTGTGGCCATGGAAGCAACTTCAAGTTTGGCGACAAGTGTTCCGACCACTGCCCTCTCAGAGGGCCAGGCAAAGCCATGCTTGCTGAAATGGAAAGGCCTCAAAAAGATAAATCGGATCTATGCCGATTGGCTCGATGATTTACCTCTATCTCCAAGCTCAGTGAGCAAATTGGAGGGATGAGTACTAGTTTTGTTTTGAAGTTTGTTTGATAAGCACAATTGATTAGTTTCAATGTGGGAGTCGGGCTGGTGCTTGTTTTCTGAATCAAGGAGTGTAGCAAAAAGGTTTTTGCTGAGAGTTTATTTGGGGTATGGATAGAAAGAGAGTGAGGTACATCTTATTGTTTGTTCTCTATTGTTCATTTATTTTGTTATTTTATATTTGTTTATATCCCACAGAAAACTTGTTTGAGATTTTAATGTCATTCAATATATTCCAGCAATTTTTAC

Coding sequence (CDS)

ATGAGTTTCAATGATATTCGAGGCTGTGTTATACCCCCGCCTCTGCATTCCCATGGTGCCAATGGCAATGAAACTGATTGCTGGTCTCAGTTTCCCGGGAATGATTTATTCGACACACAATCACAATTTGAGCGACGAGAGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCAATCTCCGCCTTATCCGCCGCCAAATTCCAGAGCTCACCCGCAAAATGCTCCAGTGAATAAAGGGATAAACAATATCTTCTTCAAGACAAGGATCTGTGCAAAATTCAAGCTTGGTTTGTGTAGGAATGGAGAAACTTGCAACTTTGCTCATGGTGTTGAAGACATGCGACAACCCCCGCCAAATTGGCAAGAAATTGTGGGGATACGTGAGGATGATCAACCCGTTAGCAACTGGAATGATGATCAGAAAATAATCCAGAAAATGAAGCTGTGTAGGAAGTTTTATATTGGGGAGGAATGCCCTTATGGAGAGAGGTGCAATTTTCTTCATGAAGATCCTTCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAGAGTTCAGCTATAAGTATTGGAACTACAGGAACTCCATTCATGAATGGAAGTGATTCTAGTTATTCTGAACCTATCAGAGCAGCTTCTAATTCTGTTTCTGATGCTTTTCGATCGAATGGAAATGCGAAGCCTTCATTCTGGAAGACCAAGCTATGCACCAAGTGGGAGATTACTGGTCATTGCCCTTTTGGTGAAAAGTGTCATTTTGCTCATGGCCAATCTGAATTACAACTCTATCTTGGACGTGAAGGGGAAGTATCCAACACTGCCTTCAATGTACAGCCTCAAGTTGTGGCCATGGAAGCAACTTCAAGTTTGGCGACAAGTGTTCCGACCACTGCCCTCTCAGAGGGCCAGGCAAAGCCATGCTTGCTGAAATGGAAAGGCCTCAAAAAGATAAATCGGATCTATGCCGATTGGCTCGATGATTTACCTCTATCTCCAAGCTCAGTGAGCAAATTGGAGGGATGA

Protein sequence

MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQSPPYPPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMRQPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKLCTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVPTTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG

Homology

[Close]

BLAST of Sed0027740.1 vs. NCBI nr
Match: KAG6599412.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 607.8 bits (1566), Expect = 5.6e-170
Identity = 288/345 (83.48%), Postives = 313/345 (90.72%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+GANG+ + CWSQ+P NDLFD QSQFE ++PPFKRARN EENQ
Sbjct: 233 MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 292

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     PP NSR  P NAP+NKGINNIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 293 SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 352

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGIREDDQ VSNWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 353 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 412

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTP +NGSDSSY EPI+AAS+SV DA R+NGN++PSFWKTKL
Sbjct: 413 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 472

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL++GREGEVSNTA NV+P VVAMEA SSLATSVP
Sbjct: 473 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 532

Query: 301 TTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           ++AL EGQAK  LLKWKG KKINRIYADWLDDLPLSP+S S+LEG
Sbjct: 533 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 577

[Close]

BLAST of Sed0027740.1 vs. NCBI nr
Match: KAG7030401.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 607.8 bits (1566), Expect = 5.6e-170
Identity = 288/345 (83.48%), Postives = 313/345 (90.72%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+GANG+ + CWSQ+P NDLFD QSQFE ++PPFKRARN EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     PP NSR  P NAP+NKGINNIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGIREDDQ VSNWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTP +NGSDSSY EPI+AAS+SV DA R+NGN++PSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL++GREGEVSNTA NV+P VVAMEA SSLATSVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLFIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300

Query: 301 TTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           ++AL EGQAK  LLKWKG KKINRIYADWLDDLPLSP+S S+LEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPNSTSQLEG 345

[Close]

BLAST of Sed0027740.1 vs. NCBI nr
Match: XP_022946029.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 607.1 bits (1564), Expect = 9.6e-170
Identity = 289/345 (83.77%), Postives = 312/345 (90.43%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+GANG+ + CWSQ+P NDLFD QSQFE ++PPFKRARN EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     PP NSR  P NAP+NKGINNIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGIREDDQ VSNWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTP +NGSDSSY EPI+AAS+SV DA R+NGN++PSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL +GREGEVSNTA NV+P VVAMEA SSLATSVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300

Query: 301 TTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           ++AL EGQAK  LLKWKG KKINRIYADWLDDLPLSPSS S+LEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 345

[Close]

BLAST of Sed0027740.1 vs. NCBI nr
Match: XP_023546561.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 601.3 bits (1549), Expect = 5.3e-168
Identity = 286/345 (82.90%), Postives = 310/345 (89.86%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+GANG+ + CWSQ+P NDLFD QSQFE ++PPFKRAR  EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARTFEENQ 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     PP NSR  P NAP+NKGINNIFFKTR+CAKFKLGLCRNG +CNFAHGVED+R
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDVR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGIREDDQ VSNWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTP +NGSDSSY EPI+AAS+SV DA R+NGN++PSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL +GREGEVSNTA NV+P VVAMEA SSLA SVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLAASVP 300

Query: 301 TTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           ++AL EGQAK  LLKWKG KKINRIYADWLDDLPLSPSS S+LEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 345

[Close]

BLAST of Sed0027740.1 vs. NCBI nr
Match: XP_022999273.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 595.5 bits (1534), Expect = 2.9e-166
Identity = 285/345 (82.61%), Postives = 307/345 (88.99%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+GANG+ + CWSQ+P NDLFD QSQFE ++PPFKRAR  EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEAQQPPFKRARTFEENQ 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     PP NSR  P NAP+NKGINNIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGIREDDQ VSNWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTP MNGSDSSY EPI+AAS+SV DA R+NGN++PSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL +GREGEVSNTA NV+P VVAMEA S    SVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPS----SVP 300

Query: 301 TTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           ++AL EGQAK  LLKWKG KKINRIYADWLDDLPLSPSS S+LEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 341

[Close]

BLAST of Sed0027740.1 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.6e-79
Identity = 168/346 (48.55%), Postives = 212/346 (61.27%), Query Frame = 0


Query: 34  NDLFDTQSQ---FERREPPFKRARNSEENQSPP---YPPPNSRAHP------QNAPVNKG 93
           + L ++QSQ    ++ +P  KR R  ++N   P   +P P+S ++P         PVNKG
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSS-SNPWMVPSLNPPPVNKG 100

Query: 94  INNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMRQPPPNWQEIVG-------------- 153
             NIF+KTR+CAKF+ G CRNGE CNFAHG+ED+RQPP NWQEIVG              
Sbjct: 101 TANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERER 160

Query: 154 IREDDQPV------SNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSG 213
            RE ++P       +NW DDQKII +MKLCRKF  GEECPYG+RCNF+HED SKFR+DSG
Sbjct: 161 ERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSG 220

Query: 214 RFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKLCTKWE 273
           + RESS IS+G T     + + S+  E  R  S  V     + G  K  +WKT+LC K++
Sbjct: 221 KLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFD 280

Query: 274 ITGHCPFGEKCHFAHGQSELQLYLGR-EGEVSNTAFNVQPQVV--AMEATSSLATSVPTT 333
           ITG CPFG+KCHFAHGQ+EL   +GR EGE  N   +V  Q V  A EA +    +  T 
Sbjct: 281 ITGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTA 340

Query: 334 ALS----EGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLE 341
             S    EG+ K CLLKW   KKINRIY DW+DDLP+   S   +E
Sbjct: 341 DSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVE 385

[Close]

BLAST of Sed0027740.1 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-44
Identity = 123/360 (34.17%), Postives = 165/360 (45.83%), Query Frame = 0


Query: 28  WSQFPGNDLFDTQSQFERREPPFKRARNSEENQSPPYPPPNSRAHPQNAPVN--KGINNI 87
           W+  P N   D         PP K+ R S         P +S A   +A  N  K I  +
Sbjct: 46  WAMNPDNTSGDNNG------PPNKKTRGS---------PSSSSATTTSAASNRTKAIGKM 105

Query: 88  FFKTRICAKFKLGLCRNGETCNFAHGVEDMRQPPPNWQEIVGIREDDQPVSNWNDDQKII 147
           FFKT++C KF+ G C     CNFAH VE++R+PPPNWQEIV   E+++          ++
Sbjct: 106 FFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVV 165

Query: 148 Q----------------------KMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSGRF 207
           +                      K + C+KFY  E CPYGE C FLH       D++ R 
Sbjct: 166 EIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH-------DEASRN 225

Query: 208 RESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNA---------KPSFWKT 267
           RES AIS+G  G     G  S         S+S        G +         KPS WKT
Sbjct: 226 RESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKT 285

Query: 268 KLCTKWEITGHCPFGEKCHFAHGQSELQLY-------LGREGEVSN--TAFNVQPQVVAM 327
           ++C KWEITG+CPFG KCHFAHG +EL  +        G++G   N  T   VQ      
Sbjct: 286 RICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLS 345

Query: 328 EATSSLATSVP----------------TTALSEGQAKPCLLKWKGLKKINRIYADWLDDL 330
           + T+ L+  VP                ++A+++        KWKG  KI+RIY DW+DD+
Sbjct: 346 DTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGIRTHQKWKGPAKISRIYGDWIDDI 383

[Close]

BLAST of Sed0027740.1 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.2e-44
Identity = 110/321 (34.27%), Postives = 155/321 (48.29%), Query Frame = 0


Query: 65  PPPNSRAH-------PQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMRQ 124
           PPP  ++          N   ++ I  +FFKT++C KF+ G C     CNFAHG+E++R+
Sbjct: 59  PPPGKKSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRK 118

Query: 125 PPPNWQEIVGIREDDQPVSNWNDDQKI--------------------------IQKMKLC 184
           PPPNWQEIV   E+    +   ++ +I                            K + C
Sbjct: 119 PPPNWQEIVAAHEE---ATEAREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHC 178

Query: 185 RKFYIGEECPYGERCNFLHEDPSKFRDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIR 244
           +KFY  E CPYG+ C FLH++ SK        RES AIS+    +P + G     S    
Sbjct: 179 KKFYTDEGCPYGDACTFLHDEQSK-------ARESVAISL----SPSVGGGGGGGSYNSA 238

Query: 245 AASNSVSDAFRSNG-NAKPSFWKTKLCTKWEITGHCPFGEKCHFAHGQSELQLYLGREGE 304
           AA+ + + A   NG   KPS WKT++C KWE+TG+CPFG KCHFAHG +EL  Y G   +
Sbjct: 239 AAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVD 298

Query: 305 VSNTAFNVQPQ----VVAMEATSSLATSVPT-------------------TALSEGQAKP 329
           + +      P     VV+ +A +  A +  T                        GQ + 
Sbjct: 299 IDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQR 358

[Close]

BLAST of Sed0027740.1 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-23
Identity = 78/270 (28.89%), Postives = 108/270 (40.00%), Query Frame = 0


Query: 82  INNIFFKTRICAKFKLGLC-RNGETCNFAHGVEDMR---QPPPNWQEIVGIREDDQPVSN 141
           I   FFKT++C KF+ G C  +  +C+FAH  E++R    PPPNWQE V           
Sbjct: 67  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETV----------- 126

Query: 142 WNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSGRFRESSAISIGTTGTP 201
                                                    ++ R RES A+S+G  G  
Sbjct: 127 ----------------------------------------TEASRNRESFAVSLGPRG-- 186

Query: 202 FMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKLCTKWEITGHCPFGEKCHFAHG 261
                             +V+   +S        WKT++C KW+ TG+CPFG  CHFAHG
Sbjct: 187 ------------------NVAQTLKSPN------WKTRICNKWQTTGYCPFGSHCHFAHG 246

Query: 262 QSELQLYLG------------------REGEVSNTAFNVQPQVVAMEATSSLATSVPTTA 321
            SEL  + G                  + G+V      V P  V+ + TSS  T  P   
Sbjct: 247 PSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPG-VSSQRTSSAVTQKPNGV 251

Query: 322 LSEGQAKPCLLKWKGLKKINRIYADWLDDL 330
            ++        KWKG  KI+R+Y DW+DD+
Sbjct: 307 RTQ-------RKWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of Sed0027740.1 vs. ExPASy Swiss-Prot
Match: Q7XPK1 (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-10
Identity = 39/116 (33.62%), Postives = 57/116 (49.14%), Query Frame = 0


Query: 147 KMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSGRFRESSAISIGTTGTPFMNGSDSSY 206
           K+K C KF+    CP+GE C+F H  P  ++        +  +++G    P         
Sbjct: 39  KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQ------AVAKTLNLGNPAVP--------- 98

Query: 207 SEPIRAASNSVSDAFRSNGNAKP-SFWKTKLCTKWEITGHCPFGEKCHFAHGQSEL 262
             P RA  +       + GN+ P S  KT++CTK+     C FG+KCHFAHG+ EL
Sbjct: 99  -APARAPMDHA-----AGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL 133

[Close]

BLAST of Sed0027740.1 vs. ExPASy TrEMBL
Match: A0A6J1G2M8 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111450240 PE=4 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 4.6e-170
Identity = 289/345 (83.77%), Postives = 312/345 (90.43%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+GANG+ + CWSQ+P NDLFD QSQFE ++PPFKRARN EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     PP NSR  P NAP+NKGINNIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGIREDDQ VSNWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTP +NGSDSSY EPI+AAS+SV DA R+NGN++PSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL +GREGEVSNTA NV+P VVAMEA SSLATSVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLATSVP 300

Query: 301 TTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           ++AL EGQAK  LLKWKG KKINRIYADWLDDLPLSPSS S+LEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 345

[Close]

BLAST of Sed0027740.1 vs. ExPASy TrEMBL
Match: A0A6J1KJ53 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111493694 PE=4 SV=1)

HSP 1 Score: 595.5 bits (1534), Expect = 1.4e-166
Identity = 285/345 (82.61%), Postives = 307/345 (88.99%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+GANG+ + CWSQ+P NDLFD QSQFE ++PPFKRAR  EENQ
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEAQQPPFKRARTFEENQ 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     PP NSR  P NAP+NKGINNIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGIREDDQ VSNWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKL 240
           RDDSGRFRESSAISIGTTGTP MNGSDSSY EPI+AAS+SV DA R+NGN++PSFWKTKL
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSYPEPIKAASSSVPDALRANGNSRPSFWKTKL 240

Query: 241 CTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSVP 300
           CTKWEITGHCPFGEKCHFAHGQSELQL +GREGEVSNTA NV+P VVAMEA S    SVP
Sbjct: 241 CTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPS----SVP 300

Query: 301 TTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           ++AL EGQAK  LLKWKG KKINRIYADWLDDLPLSPSS S+LEG
Sbjct: 301 SSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLEG 341

[Close]

BLAST of Sed0027740.1 vs. ExPASy TrEMBL
Match: A0A5A7V7E5 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00080 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 1.0e-164
Identity = 283/347 (81.56%), Postives = 308/347 (88.76%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+G+NG+ + CWSQFP ND FD QSQFE ++PP+KRARNSEEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     P  NSR HP NAPVNKGI+NIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGI+EDDQ V+NWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSD-SSYSEPIRAASNSVSDAFRSNGNAKPSFWKTK 240
           RDDSGRFRESSAISIGTTGTP MNGSD SSY EP RA S SVSDA R+NGN +PSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQLY+GREGEVS  A NV+P +VAMEA+SSL TSV
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 -PTTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
            P++AL EGQAKP LLKWKG KKINRIYADWLDDLPLSPSS SK+EG
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of Sed0027740.1 vs. ExPASy TrEMBL
Match: A0A1S3C7N3 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103497405 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 1.0e-164
Identity = 283/347 (81.56%), Postives = 308/347 (88.76%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+RG VIPPPLHS+G+NG+ + CWSQFP ND FD QSQFE ++PP+KRARNSEEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     P  NSR HP NAPVNKGI+NIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGI+EDDQ V+NWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSD-SSYSEPIRAASNSVSDAFRSNGNAKPSFWKTK 240
           RDDSGRFRESSAISIGTTGTP MNGSD SSY EP RA S SVSDA R+NGN +PSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATSV 300
           LCTKWEITGHCPFG+KCHFAHGQSELQLY+GREGEVS  A NV+P +VAMEA+SSL TSV
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTSV 300

Query: 301 -PTTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
            P++AL EGQAKP LLKWKG KKINRIYADWLDDLPLSPSS SK+EG
Sbjct: 301 LPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of Sed0027740.1 vs. ExPASy TrEMBL
Match: A0A0A0LKX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.3e-161
Identity = 277/347 (79.83%), Postives = 304/347 (87.61%), Query Frame = 0


Query: 1   MSFNDIRGCVIPPPLHSHGANGNETDCWSQFPGNDLFDTQSQFERREPPFKRARNSEENQ 60
           MSFND+R  VIPPPLHS+G+NG+ + CWSQFP ND FD QSQFE ++PP+KRARNSEEN 
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  SPPY----PPPNSRAHPQNAPVNKGINNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMR 120
           S P     P  NSR  P NAPVNKGI+NIFFKTR+CAKFKLGLCRNG +CNFAHGVEDMR
Sbjct: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQPVSNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKF 180
           QPPPNWQEIVGI+EDDQ V+NWNDDQKIIQKMKLCRKFY GEECPYG+RCNFLHEDP+KF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTGTPFMNGSD-SSYSEPIRAASNSVSDAFRSNGNAKPSFWKTK 240
           RDDSGRFRESSAISIGTTGTP MNG+D SSY EP R  S SVSDA R+NGN +PSFWKTK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRPSFWKTK 240

Query: 241 LCTKWEITGHCPFGEKCHFAHGQSELQLYLGREGEVSNTAFNVQPQVVAMEATSSLATS- 300
           LCTKWEITGHCPFG+KCHFAHGQSELQLY+GREGEVS  A NV+P +VAMEA+SSL T+ 
Sbjct: 241 LCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTTNV 300

Query: 301 VPTTALSEGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLEG 342
           VP++AL EGQ KP LLKWKG KKINRIYADWLDDLPLSPSS SK+EG
Sbjct: 301 VPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKMEG 347

[Close]

BLAST of Sed0027740.1 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-80
Identity = 168/346 (48.55%), Postives = 212/346 (61.27%), Query Frame = 0


Query: 34  NDLFDTQSQ---FERREPPFKRARNSEENQSPP---YPPPNSRAHP------QNAPVNKG 93
           + L ++QSQ    ++ +P  KR R  ++N   P   +P P+S ++P         PVNKG
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSS-SNPWMVPSLNPPPVNKG 100

Query: 94  INNIFFKTRICAKFKLGLCRNGETCNFAHGVEDMRQPPPNWQEIVG-------------- 153
             NIF+KTR+CAKF+ G CRNGE CNFAHG+ED+RQPP NWQEIVG              
Sbjct: 101 TANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERER 160

Query: 154 IREDDQPV------SNWNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSG 213
            RE ++P       +NW DDQKII +MKLCRKF  GEECPYG+RCNF+HED SKFR+DSG
Sbjct: 161 ERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSG 220

Query: 214 RFRESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKLCTKWE 273
           + RESS IS+G T     + + S+  E  R  S  V     + G  K  +WKT+LC K++
Sbjct: 221 KLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFD 280

Query: 274 ITGHCPFGEKCHFAHGQSELQLYLGR-EGEVSNTAFNVQPQVV--AMEATSSLATSVPTT 333
           ITG CPFG+KCHFAHGQ+EL   +GR EGE  N   +V  Q V  A EA +    +  T 
Sbjct: 281 ITGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTA 340

Query: 334 ALS----EGQAKPCLLKWKGLKKINRIYADWLDDLPLSPSSVSKLE 341
             S    EG+ K CLLKW   KKINRIY DW+DDLP+   S   +E
Sbjct: 341 DSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDLPVGQKSTKPVE 385

[Close]

BLAST of Sed0027740.1 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 182.2 bits (461), Expect = 7.1e-46
Identity = 123/360 (34.17%), Postives = 165/360 (45.83%), Query Frame = 0


Query: 28  WSQFPGNDLFDTQSQFERREPPFKRARNSEENQSPPYPPPNSRAHPQNAPVN--KGINNI 87
           W+  P N   D         PP K+ R S         P +S A   +A  N  K I  +
Sbjct: 46  WAMNPDNTSGDNNG------PPNKKTRGS---------PSSSSATTTSAASNRTKAIGKM 105

Query: 88  FFKTRICAKFKLGLCRNGETCNFAHGVEDMRQPPPNWQEIVGIREDDQPVSNWNDDQKII 147
           FFKT++C KF+ G C     CNFAH VE++R+PPPNWQEIV   E+++          ++
Sbjct: 106 FFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVV 165

Query: 148 Q----------------------KMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSGRF 207
           +                      K + C+KFY  E CPYGE C FLH       D++ R 
Sbjct: 166 EIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH-------DEASRN 225

Query: 208 RESSAISIGTTGTPFMNGSDSSYSEPIRAASNSVSDAFRSNGNA---------KPSFWKT 267
           RES AIS+G  G     G  S         S+S        G +         KPS WKT
Sbjct: 226 RESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKT 285

Query: 268 KLCTKWEITGHCPFGEKCHFAHGQSELQLY-------LGREGEVSN--TAFNVQPQVVAM 327
           ++C KWEITG+CPFG KCHFAHG +EL  +        G++G   N  T   VQ      
Sbjct: 286 RICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLS 345

Query: 328 EATSSLATSVP----------------TTALSEGQAKPCLLKWKGLKKINRIYADWLDDL 330
           + T+ L+  VP                ++A+++        KWKG  KI+RIY DW+DD+
Sbjct: 346 DTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGIRTHQKWKGPAKISRIYGDWIDDI 383

[Close]

BLAST of Sed0027740.1 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-24
Identity = 78/270 (28.89%), Postives = 108/270 (40.00%), Query Frame = 0


Query: 82  INNIFFKTRICAKFKLGLC-RNGETCNFAHGVEDMR---QPPPNWQEIVGIREDDQPVSN 141
           I   FFKT++C KF+ G C  +  +C+FAH  E++R    PPPNWQE V           
Sbjct: 67  IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETV----------- 126

Query: 142 WNDDQKIIQKMKLCRKFYIGEECPYGERCNFLHEDPSKFRDDSGRFRESSAISIGTTGTP 201
                                                    ++ R RES A+S+G  G  
Sbjct: 127 ----------------------------------------TEASRNRESFAVSLGPRG-- 186

Query: 202 FMNGSDSSYSEPIRAASNSVSDAFRSNGNAKPSFWKTKLCTKWEITGHCPFGEKCHFAHG 261
                             +V+   +S        WKT++C KW+ TG+CPFG  CHFAHG
Sbjct: 187 ------------------NVAQTLKSPN------WKTRICNKWQTTGYCPFGSHCHFAHG 246

Query: 262 QSELQLYLG------------------REGEVSNTAFNVQPQVVAMEATSSLATSVPTTA 321
            SEL  + G                  + G+V      V P  V+ + TSS  T  P   
Sbjct: 247 PSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPG-VSSQRTSSAVTQKPNGV 251

Query: 322 LSEGQAKPCLLKWKGLKKINRIYADWLDDL 330
            ++        KWKG  KI+R+Y DW+DD+
Sbjct: 307 RTQ-------RKWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of Sed0027740.1 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 49.3 bits (116), Expect = 7.2e-06
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 233 KTKLCTKWEITGHCPFGEKCHFAHGQSELQ 263
           KT+LC KW+ TG CP+G+ C FAHG  EL+
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253

[Close]

BLAST of Sed0027740.1 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 49.3 bits (116), Expect = 7.2e-06
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 233 KTKLCTKWEITGHCPFGEKCHFAHGQSELQ 263
           KT+LC KW+ TG CP+G+ C FAHG  EL+
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKELR 252

The following BLAST results are available for this feature:

BLAST of Sed0027740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599412.1	5.6e-170	83.48	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
KAG7030401.1	5.6e-170	83.48	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
XP_022946029.1	9.6e-170	83.77	zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata]	[more]
XP_023546561.1	5.3e-168	82.90	zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999273.1	2.9e-166	82.61	zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima]	[more]

BLAST of Sed0027740.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT81	1.6e-79	48.55	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LQM3	1.0e-44	34.17	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	2.2e-44	34.27	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q5PP65	1.7e-23	28.89	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7XPK1	1.6e-10	33.62	Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Sed0027740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2M8	4.6e-170	83.77	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KJ53	1.4e-166	82.61	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7V7E5	1.0e-164	81.56	Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3C7N3	1.0e-164	81.56	zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0LKX6	2.3e-161	79.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1	[more]

BLAST of Sed0027740.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	1.2e-80	48.55	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	7.1e-46	34.17	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	1.2e-24	28.89	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	7.2e-06	60.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	7.2e-06	60.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 145..172 e-value: 7.9E-4 score: 28.7 coord: 231..258 e-value: 2.1E-7 score: 40.6 coord: 86..112 e-value: 1.3E-4 score: 31.4
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 232..258 e-value: 1.6E-10 score: 40.6 coord: 146..170 e-value: 2.0E-7 score: 30.7 coord: 87..111 e-value: 1.9E-6 score: 27.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 231..259 score: 15.844671
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 86..113 score: 13.966851
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 145..173 score: 14.304858
None	No IPR available	GENE3D	4.10.1000.10		coord: 80..117 e-value: 1.4E-9 score: 39.2 coord: 225..263 e-value: 2.6E-15 score: 57.5 coord: 145..174 e-value: 2.4E-6 score: 28.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..77
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 1..330
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 1..330
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 84..117
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 230..262
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 145..172

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0027740	Sed0027740	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027740.1-three_prime_utr	Sed0027740.1-three_prime_utr-LG11:907040..907308	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027740.1-exon	Sed0027740.1-exon-LG11:907040..907556	exon
Sed0027740.1-exon	Sed0027740.1-exon-LG11:908255..910011	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027740.1-cds	Sed0027740.1-cds-LG11:907309..907556	CDS
Sed0027740.1-cds	Sed0027740.1-cds-LG11:908255..909032	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027740.1-five_prime_utr	Sed0027740.1-five_prime_utr-LG11:909033..910011	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0027740.1	Sed0027740.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003677	DNA binding