Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGTACACACAAATAAAAAAAAATTCTAAATAGCTATTAAAAGTTATACATTCAGCTAGCTCAAAAAAAGTATATACACATGGTTGTTATTTTTAAATAAGAAATGAACTTTCATAGAAATATAAAATTAAGTACAAGGATATACAAAATACACAGCCTCACTAAAAGGAGGCCCAAAACTACTGCAAGAACAAACCACAATCCAAAAGAATGAAACCAAGCTAACAAGGACCCAATTTTATTTGTTAATGAACCAAGCTTCTTACTTCTGGTTCTTGAAGAAACTTCTTATACAAGTTGAATGTTGCAAGATGAAACATATCCTAGGACAAACATGTTCCTTTGGTGTTTCCCAGTGCCTGGTTAAAGGGCGGGCGTGGTTACTCCGGGCATATTTGAGCGAAGCTCCAATTTTCTGGTCTAAAAAAAAAAGGAATGAAGGCTCGATATAGATTCATGTATGCTATGCTTCAACTAATCCTTAACACTCTCCATCTTTCCATCATTATCTCGGAATCCAATATCTTTGTAATATGACTCTTTGGATTCAAAGGGGAATATACATTTTTAAATTATGAATATGCAAGTGAGGAATCACGCAAATAAGAAAATCTATTTGTTAAAACACAAAGGTTTTGCATGTAATAGAAATAGGAAAAAATGAAAAGGCTGGAAAGTCAAAATAGAAAATCCAATTCAATACAGAACAAAATCCAAAGTAAATTCACATTCCTGCACAAAAACCAAATTGCAAATCAACAATTATTATCAAACAAAGTCCCAACTCTAATTTTCTAATGTAAACTTATGCTTCTGCCTTATTTATCTCGGCCACAGGGACGTCGGGGATGTCGATAGCAGCAGAAACGTAGGCGACGTTGTTGGCAAGGACGTCAGGGACGTCGTTGGCAAGGATGTCAGGGATGTCAATGACAGTAGGGACGTCGGGGACATCGTTGGCAGGGACGTTGGGGATGTTGATGGCAGCAGGGACATCGCGGATGTCGTTGGCAAGGACATTGGGGAAGTCGTTGGCACGGACGTCCGGGACGTCGTTGACAGGGACAACGGGGATGTCGTTGATAGGGAAATCGGGGATGTCGATGGCAGTAGGGACGTTGCGGACGTCGTTGGCACAGATGCCGGGGACGTCGTTGGCAGGGACGTCGGGGATGTTGATGGCAACAAGGACGTCGAGGATGTCGATGGCAGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAGACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAGGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGGCGTCGAGGATGTCGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCTAGGGAGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAAACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAAGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGACGTCGAGGATGTTGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGCGACGTCGGGGACGTCATTGGCAGGGATGTCGGGGATGTCGATGGCAGTAGGGATGGGGTCATCGTTGGCGGGGACGTTGAGGATGTCGATGGCAGCAGGGACGTCGGGAACGTCGATCGCCACACGGATTGCAAGGACGTTGTTGGCGGCAACGTTGTTGGCCAGAGGAGCATTCCTCTACAGGTTCAAAAAGTATTGGAGAACTTCGCGGTGGTGAAAATACAAAGTCCACAATAG
mRNA sequence
ATGGGAAGGGACGTCGGGGATGTCGATAGCAGCAGAAACGTAGGCGACGTTGTTGGCAAGGACGTCAGGGACGTCGTTGGCAAGGATGTCAGGGATGTCAATGACAGTAGGGACGTCGGGGACATCGTTGGCAGGGACGTTGGGGATGTTGATGGCAGCAGGGACATCGCGGATGTCGTTGGCAAGGACATTGGGGAAGTCGTTGGCACGGACGTCCGGGACGTCGTTGACAGGGACAACGGGGATGTCGTTGATAGGGAAATCGGGGATGTCGATGGCAGTAGGGACGTTGCGGACGTCGTTGGCACAGATGCCGGGGACGTCGTTGGCAGGGACGTCGGGGATGTTGATGGCAACAAGGACGTCGAGGATGTCGATGGCAGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAGACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGGGCGTCGAGGATGTCGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCTAGGGAGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAAACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAAGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGACGTCGAGGATGTTGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGCGACGTCGGGGACGTCATTGGCAGGGATGTCGGGGATGTCGATGGCAGTAGGGATGGGGTCATCGTTGGCGGGGACGTTGAGGATGTCGATGGCAGCAGGGACGTCGGGAACGTCGATCGCCACACGGATTGCAAGGACGTTGTTGGCGGCAACGTTGTTGGCCAGAGGAGCATTCCTCTACAGGTTCAAAAAGTATTGGAGAACTTCGCGGTGGTGAAAATACAAAGTCCACAATAG
Coding sequence (CDS)
ATGGGAAGGGACGTCGGGGATGTCGATAGCAGCAGAAACGTAGGCGACGTTGTTGGCAAGGACGTCAGGGACGTCGTTGGCAAGGATGTCAGGGATGTCAATGACAGTAGGGACGTCGGGGACATCGTTGGCAGGGACGTTGGGGATGTTGATGGCAGCAGGGACATCGCGGATGTCGTTGGCAAGGACATTGGGGAAGTCGTTGGCACGGACGTCCGGGACGTCGTTGACAGGGACAACGGGGATGTCGTTGATAGGGAAATCGGGGATGTCGATGGCAGTAGGGACGTTGCGGACGTCGTTGGCACAGATGCCGGGGACGTCGTTGGCAGGGACGTCGGGGATGTTGATGGCAACAAGGACGTCGAGGATGTCGATGGCAGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAGACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGGGCGTCGAGGATGTCGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACATCGGGGACGTCGTTGGCAGGGACGTCTAGGGAGTTGTTGGCAGGGACGTCGGGGACGTCATTGGCAGAGATGTCGGGGATGTCGATGGCACAAACGTCGTTGACAGGGACATCGAGGATGTCGATGGCAGTAGGGACGTCGCGGACGTCGTTGGCAAGTATGTCGGGGATGTTGATGGCAACAGGACGTCGGGGATGTCATTGCAGGGACGTCGAGGATGTTGATGGCAGCAGGGAAATCAGGTACATTGTTGGCAGGGACGTCGAGGGCGTTGTTGGCAGCGACGTCGGGGACGTCATTGGCAGGGATGTCGGGGATGTCGATGGCAGTAGGGATGGGGTCATCGTTGGCGGGGACGTTGAGGATGTCGATGGCAGCAGGGACGTCGGGAACGTCGATCGCCACACGGATTGCAAGGACGTTGTTGGCGGCAACGTTGTTGGCCAGAGGAGCATTCCTCTACAGGTTCAAAAAGTATTGGAGAACTTCGCGGTGGTGAAAATACAAAGTCCACAATAG
Protein sequence
MGRDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVVGKDIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNKDVEDVDGSRDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSREIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSIPLQVQKVLENFAVVKIQSPQ
Homology
BLAST of Sed0027720.1 vs. NCBI nr
Match:
CAF2130703.1 (unnamed protein product [Brassica napus])
HSP 1 Score: 93.6 bits (231), Expect = 3.8e-15
Identity = 115/365 (31.51%), Postives = 164/365 (44.93%), Query Frame = 0
Query: 2 GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
GRD G D N+G ++ G+D+ V+G+D RD+G ++GRD G RD ++
Sbjct: 325 GRDTGGRDIGGNLGREIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 384
Query: 62 GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD-GSRDVADVVGTDAGDVVGRDVGDVD 121
G+D G + G RD RD G + R+ G + G RD + G D G ++GRD G D
Sbjct: 385 GRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRETGGRDTGGIFGRDTGGILGRDTGGRD 444
Query: 122 GNKDVEDVDGS--RDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDRDIEDVDGRA 181
+ D G+ RD G GR+ G++GRD G ++GRD G D + RD V GR
Sbjct: 445 TDTGGRDTGGNLGRDTG---GRNTGGILGRDTGGILGRDTGGRDTGGIFGRDTGGVLGRD 504
Query: 182 SRMSMAAGKS-------------GTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMA 241
+ S G+ G L G +G +L G +L G +G + G
Sbjct: 505 TGGSETGGRDTGGILGRDTGGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFG 564
Query: 242 QTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDV 301
+ G R SG ++ G D G+R E+ I G D+
Sbjct: 565 GDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDI 624
Query: 302 EGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVG 346
+GV G+ VG++ G D GDV G G + GGD D G D+G V D + V G V G
Sbjct: 625 DGVCGAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGG 667
BLAST of Sed0027720.1 vs. NCBI nr
Match:
CAG7884074.1 (unnamed protein product [Brassica rapa])
HSP 1 Score: 92.8 bits (229), Expect = 6.5e-15
Identity = 115/361 (31.86%), Postives = 164/361 (45.43%), Query Frame = 0
Query: 2 GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
GRD G D+ N+G ++ G+D+ V+G+D RD+G ++GRD G RD ++
Sbjct: 372 GRDTGGRDTGGNLGIEIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 431
Query: 62 GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVG---- 121
G+D G + G RD RD G + R+ G RD + G D G ++GRD G
Sbjct: 432 GRDTGGRDTGGVLGRDTGGRDTGGALGRD----TGGRDTGGIFGRDTGGILGRDTGGRET 491
Query: 122 ---DVDGNKDVEDVDGSRDIGDVV-----GRDVEGVVGRDVGDVIGRDVGDVDGTDVVDR 181
D+ GN + G RD G ++ GRD G+ GRD G V+GRD G G++ R
Sbjct: 492 GGRDIGGNLGRD--TGGRDTGGILGRYTGGRDTGGIFGRDTGGVLGRDTG---GSETGGR 551
Query: 182 DIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSL 241
D + GR + G G L G +G +L G +L G +G + G +
Sbjct: 552 DTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFGGDA- 611
Query: 242 TGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDVEGVV 301
G R SG ++ G D G+R E+ I G D++GV
Sbjct: 612 -GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDIDGVC 671
Query: 302 GSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSI 346
G+ VG++ G D GDV G G + GGD D G D+G V D + V G V G +
Sbjct: 672 GAAVGEIFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGGDTGV 699
BLAST of Sed0027720.1 vs. NCBI nr
Match:
KAG5406900.1 (hypothetical protein IGI04_013019 [Brassica rapa subsp. trilocularis])
HSP 1 Score: 92.0 bits (227), Expect = 1.1e-14
Identity = 116/361 (32.13%), Postives = 163/361 (45.15%), Query Frame = 0
Query: 2 GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
GRD G D+ N+G ++ G+D+ V+G+D RD+G ++GRD G RD ++
Sbjct: 422 GRDTGGRDTGGNLGIEIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 481
Query: 62 GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVG---- 121
G+D G + G RD RD G + R+ G RD + G D G ++GRD G
Sbjct: 482 GRDTGGRDTGGVLGRDTGGRDTGGALGRD----TGGRDTGGIFGRDTGGILGRDTGGRET 541
Query: 122 ---DVDGNKDVEDVDGSRDIG-----DVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDR 181
D+ GN + G RD G D GRD G+ GRD G V+GRD G G++ R
Sbjct: 542 GGRDIGGNLGRD--TGGRDTGGILGRDTGGRDTGGIFGRDTGGVLGRDTG---GSETGGR 601
Query: 182 DIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSL 241
D + GR + G G L G +G +L G +L G +G + G +
Sbjct: 602 DTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFGGDA- 661
Query: 242 TGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDVEGVV 301
G R SG ++ G D G+R E+ I G D++GV
Sbjct: 662 -GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDIDGVC 721
Query: 302 GSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSI 346
G+ VG++ G D GDV G G + GGD D G D+G V D + V G V G +
Sbjct: 722 GAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGGDTGV 749
BLAST of Sed0027720.1 vs. NCBI nr
Match:
XP_022573111.1 (uncharacterized transmembrane protein DDB_G0289901-like [Brassica napus])
HSP 1 Score: 92.0 bits (227), Expect = 1.1e-14
Identity = 116/361 (32.13%), Postives = 163/361 (45.15%), Query Frame = 0
Query: 2 GRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 61
GRD G D+ N+G ++ G+D+ V+G+D RD+G ++GRD G RD ++
Sbjct: 337 GRDTGGRDTGGNLGIEIGGRDIGGVLGRD----TGGRDIGGVLGRDT----GGRDTGGIL 396
Query: 62 GKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVG---- 121
G+D G + G RD RD G + R+ G RD + G D G ++GRD G
Sbjct: 397 GRDTGGRDTGGVLGRDTGGRDTGGALGRD----TGGRDTGGIFGRDTGGILGRDTGGRET 456
Query: 122 ---DVDGNKDVEDVDGSRDIG-----DVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDR 181
D+ GN + G RD G D GRD G+ GRD G V+GRD G G++ R
Sbjct: 457 GGRDIGGNLGRD--TGGRDTGGILGRDTGGRDTGGIFGRDTGGVLGRDTG---GSETGGR 516
Query: 182 DIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAGTSGTSLAEMSGMSMAQTSL 241
D + GR + G G L G +G +L G +L G +G + G +
Sbjct: 517 DTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGGETGGVCGGIIGEFFGGDA- 576
Query: 242 TGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVDGSR--EIRYIVGRDVEGVV 301
G R SG ++ G D G+R E+ I G D++GV
Sbjct: 577 -GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTGGARGGEVGGIFGGDIDGVC 636
Query: 302 GSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVDRHTDCKDVVGGNVVGQRSI 346
G+ VG++ G D GDV G G + GGD D G D+G V D + V G V G +
Sbjct: 637 GAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV-LDGDTRGVRDGIVGGDTGV 664
BLAST of Sed0027720.1 vs. NCBI nr
Match:
VDC83200.1 (unnamed protein product [Brassica rapa])
HSP 1 Score: 89.0 bits (219), Expect = 9.4e-14
Identity = 120/380 (31.58%), Postives = 166/380 (43.68%), Query Frame = 0
Query: 1 MGRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVD-------- 60
+GRD G ++ +G G++ D++G+D RD G I GRD G D
Sbjct: 332 LGRDTGGRETGGILGRGTSGRETGDILGRD----TGGRDTGGIFGRDTGGRDTGGNLGIE 391
Query: 61 -GSRDIADVVGKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD---------GSRDVAD 120
G RDI V+G+D G + G RD RD G V+ R+ G D G RD
Sbjct: 392 IGGRDIGGVLGRDTGGRDTGGILGRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRDTGG 451
Query: 121 VVGTDAGDVVGRDVG-------DVDGNKDVEDVDGSRDIGDVV-----GRDVEGVVGRDV 180
+ G D G ++GRD G D+ GN + G RD G ++ GRD G+ GRD
Sbjct: 452 IFGRDTGGILGRDTGGRETGGRDIGGNLGRD--TGGRDTGGILGRYTGGRDTGGIFGRDT 511
Query: 181 GDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAG 240
G V+GRD G G++ RD + GR + G G L G +G +L G +L G
Sbjct: 512 GGVLGRDTG---GSETGGRDTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGG 571
Query: 241 TSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVD 300
+G + G + G R SG ++ G D
Sbjct: 572 ETGGVCGGIIGEFFGGDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTG 631
Query: 301 GSR--EIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVD 346
G+R E+ I G D++GV G+ VG++ G D GDV G G + GGD D G D+G V
Sbjct: 632 GARGGEVGGIFGGDIDGVCGAAVGEIFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV- 686
BLAST of Sed0027720.1 vs. ExPASy Swiss-Prot
Match:
E9Q784 (Zinc finger CCCH domain-containing protein 13 OS=Mus musculus OX=10090 GN=Zc3h13 PE=1 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 4.1e-04
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = 0
Query: 3 RDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVVGK 62
RD D S+R+V D ++ RD +DVRD D+RD D RD+ DV RD+ DV
Sbjct: 483 RDPRDSRSARDVHDYRDREARDAHARDVRDARDARDARD--ARDIRDVRDVRDVRDV--- 542
Query: 63 DIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNKDV 122
DVRDV D R++ DV +RDV DV DA DV RDV DV
Sbjct: 543 -------RDVRDVRD-------VRDVRDVRDARDVRDV--RDARDV--RDVRDVRDGHRK 582
Query: 123 EDV 126
EDV
Sbjct: 603 EDV 582
BLAST of Sed0027720.1 vs. ExPASy TrEMBL
Match:
A0A3P6ADG6 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA03T14418Z PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 120/380 (31.58%), Postives = 166/380 (43.68%), Query Frame = 0
Query: 1 MGRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVD-------- 60
+GRD G ++ +G G++ D++G+D RD G I GRD G D
Sbjct: 332 LGRDTGGRETGGILGRGTSGRETGDILGRD----TGGRDTGGIFGRDTGGRDTGGNLGIE 391
Query: 61 -GSRDIADVVGKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD---------GSRDVAD 120
G RDI V+G+D G + G RD RD G V+ R+ G D G RD
Sbjct: 392 IGGRDIGGVLGRDTGGRDTGGILGRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRDTGG 451
Query: 121 VVGTDAGDVVGRDVG-------DVDGNKDVEDVDGSRDIGDVV-----GRDVEGVVGRDV 180
+ G D G ++GRD G D+ GN + G RD G ++ GRD G+ GRD
Sbjct: 452 IFGRDTGGILGRDTGGRETGGRDIGGNLGRD--TGGRDTGGILGRYTGGRDTGGIFGRDT 511
Query: 181 GDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAG 240
G V+GRD G G++ RD + GR + G G L G +G +L G +L G
Sbjct: 512 GGVLGRDTG---GSETGGRDTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGG 571
Query: 241 TSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVD 300
+G + G + G R SG ++ G D
Sbjct: 572 ETGGVCGGIIGEFFGGDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTG 631
Query: 301 GSR--EIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVD 346
G+R E+ I G D++GV G+ VG++ G D GDV G G + GGD D G D+G V
Sbjct: 632 GARGGEVGGIFGGDIDGVCGAAVGEIFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV- 686
BLAST of Sed0027720.1 vs. ExPASy TrEMBL
Match:
M4DS83 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 121/380 (31.84%), Postives = 164/380 (43.16%), Query Frame = 0
Query: 1 MGRDVGDVDSSRNVG-DVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVD-------- 60
+GRD G ++ G G++ D++G+D RD G I GRD G D
Sbjct: 332 LGRDTGGRETGGIFGRGTSGRETGDILGRD----TGGRDTGGIFGRDTGGRDTGGNLGIE 391
Query: 61 -GSRDIADVVGKDIG--EVVGTDVRDVVDRDNGDVVDREIGDVD---------GSRDVAD 120
G RDI V+G+D G + G RD RD G V+ R+ G D G RD
Sbjct: 392 IGGRDIGGVLGRDTGGRDTGGILGRDTGGRDTGGVLGRDTGGRDTGGALGRDTGGRDTGG 451
Query: 121 VVGTDAGDVVGRDVG-------DVDGNKDVEDVDGSRDIG-----DVVGRDVEGVVGRDV 180
+ G D G ++GRD G D+ GN + G RD G D GRD G+ GRD
Sbjct: 452 IFGRDTGGILGRDTGGRETGGRDIGGNLGRD--TGGRDTGGILGRDTGGRDTGGIFGRDT 511
Query: 181 GDVIGRDVGDVDGTDVVDRDIEDVDGRASRMSMAAGKSGTLLAGTSGTSLAGTSRELLAG 240
G V+GRD G G++ RD + GR + G G L G +G +L G +L G
Sbjct: 512 GGVLGRDTG---GSETGGRDTGGILGRDT-----GGIVGGFLGGYTGGALRGEVDGVLGG 571
Query: 241 TSGTSLAEMSGMSMAQTSLTGTSRMSMAVGTSRTSLASMSGMLMATGRRGCHCRDVEDVD 300
+G + G + G R SG ++ G D
Sbjct: 572 ETGGVCGGIIGEFFGGDA--GGKRGEEVGDVFGGETGGASGEIIGGLLGG-------DTG 631
Query: 301 GSR--EIRYIVGRDVEGVVGSDVGDVIGRDVGDVDGSRDGVIVGGDVEDVDGSRDVGNVD 346
G+R E+ I G D++GV G+ VG++ G D GDV G G + GGD D G D+G V
Sbjct: 632 GARGGEVGGIFGGDIDGVCGAAVGELFGGDTGDVLGGEVGGVFGGDTGDARGG-DIGGV- 686
BLAST of Sed0027720.1 vs. ExPASy TrEMBL
Match:
A0A401QH01 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0025253 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 9.4e-12
Identity = 77/173 (44.51%), Postives = 102/173 (58.96%), Query Frame = 0
Query: 4 DVGDVDSSRNVGDVVGK-DVRDVVG-KDVRDVNDSRDVGDIVG-RDVGDVDGSRDIADVV 63
DVGDV NVGDV GK DV +V G +DV DV+ DVG++ G DVG+ G D+ +V
Sbjct: 49 DVGDVSGDENVGDVSGKEDVGNVSGEEDVGDVSGEEDVGNVSGEEDVGNATGKEDVGNVS 108
Query: 64 G-KDIGEVVGTDVRDVVDRDNGDVV-DREIGDVDGSRDVADVVG-TDAGDVVG-RDVGDV 123
G +D+G V G D D G+V + ++G+V G DV +V G D GDV G DVG+V
Sbjct: 109 GEEDVGNVSGED-------DVGNVTGEEDVGNVRGEEDVGNVSGEEDVGDVSGEEDVGNV 168
Query: 124 DGNKDVEDVDGSRDIGDVVG-RDVEGVVG-RDVGDVIGR-DVGDVDGTDVVDR 167
G +DV + G D+G+V G DV G DVGDV G+ DV V+G + V +
Sbjct: 169 SGEEDVGNASGEEDVGNVSGEEDVGNASGEEDVGDVTGKEDVWSVNGEEDVGK 214
BLAST of Sed0027720.1 vs. ExPASy TrEMBL
Match:
A0A6P0MTT3 (Uncharacterized protein OS=Symploca sp. SIO2C1 OX=2607783 GN=F6K14_34160 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 1.8e-10
Identity = 86/176 (48.86%), Postives = 94/176 (53.41%), Query Frame = 0
Query: 1 MGRDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 60
MG DVGD D VG VVG DV D VG V V VG +VG DVG V G VV
Sbjct: 1 MGDDVGD-DVGGVVGGVVGDDVGDDVGGVVGGV-----VGGVVGDDVGGVVGG-----VV 60
Query: 61 GKDIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNK 120
G D+G VVG V VV G VV +GD DV D VG D G VVG D GD DG+
Sbjct: 61 GDDVGGVVGGVVGGVVGGVVGGVVGGVVGD-----DVGDDVGDDVGGVVGDDDGDDDGD- 120
Query: 121 DVEDVDG---SRDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGTDVVDRDIEDVDG 174
DV V G +G VVG V GVVG VG ++G VGDV G DV D +DV G
Sbjct: 121 DVGGVVGGVVGGVVGGVVGGVVGGVVGGVVGVLVGGVVGDVVGDDVGDDVGDDVGG 159
BLAST of Sed0027720.1 vs. ExPASy TrEMBL
Match:
A0A3S1HVN5 (Gly-zipper_Omp domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08_005232 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 3.0e-10
Identity = 88/177 (49.72%), Postives = 98/177 (55.37%), Query Frame = 0
Query: 1 MGRDVGDVDSSRNVGDVVGKDVRDVVGKDVRDVNDSRDVGDIVGRDVGDVDGSRDIADVV 60
+GR VG V S VG VVG+ V VVG V V VG +VGR VG + G R + VV
Sbjct: 59 VGRVVGSVVGS-VVGRVVGRVVGSVVGSVVGSV-----VGSVVGRVVGKMAG-RVLGSVV 118
Query: 61 GKDIGEVVGTDVRDVVDRDNGDVVDREIGDVDGSRDVADVVGTDAGDVVGRDVGDVDGNK 120
G IG VVG V VV R G VV R +G V G R V VVG G VVGR VG V G +
Sbjct: 119 GSVIGSVVGRVVGSVVGRVVGSVVGRVVGSVVG-RVVGSVVGRVVGSVVGRVVGSVVG-R 178
Query: 121 DVEDVDGSRDIGDVVGRDVEGVVGRDVGDVIGRDVGDVDGT---DVVDRDIEDVDGR 175
V V G R +G VVGR V VVGR VG V+GR VG V G VV R + V GR
Sbjct: 179 VVGSVVG-RVVGSVVGRVVGSVVGRVVGSVVGRVVGSVVGRVVGSVVGRVVGSVVGR 225
BLAST of Sed0027720.1 vs. TAIR 10
Match:
AT5G55680.1 (glycine-rich protein )
HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 52/138 (37.68%), Postives = 65/138 (47.10%), Query Frame = 0
Query: 39 VGDIVGRDVGDVDGSRDIADVVGKDIGEVVG--TDVRDVVDRDNGDVVDREIGDVDGSRD 98
VG I+G ++GD G VVG D GEV G T V DVV + G+V E GD G
Sbjct: 45 VGLIIGAEIGDFPGI-----VVGGDTGEVAGVETGVVDVVGEETGEVTGDETGDFRGDAM 104
Query: 99 VADVVGTDAGDVVGRDVGDVDGNKDVEDVDGSRDIGDVVGRDVEGVVGRDVGDVIGRDVG 158
V DV G AGD + GD +G V + G + V D +G G+V G G
Sbjct: 105 VRDVTGEVAGD----ETGDFNGEAMVREETG--EFVGVKTGDFDGDAVVQDGEVAGERTG 164
Query: 159 DVDG-TDVVDRDIEDVDG 174
D+DG T + ED G
Sbjct: 165 DIDGVTKAAGEETEDFSG 171
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
CAF2130703.1 | 3.8e-15 | 31.51 | unnamed protein product [Brassica napus] | [more] |
CAG7884074.1 | 6.5e-15 | 31.86 | unnamed protein product [Brassica rapa] | [more] |
KAG5406900.1 | 1.1e-14 | 32.13 | hypothetical protein IGI04_013019 [Brassica rapa subsp. trilocularis] | [more] |
XP_022573111.1 | 1.1e-14 | 32.13 | uncharacterized transmembrane protein DDB_G0289901-like [Brassica napus] | [more] |
VDC83200.1 | 9.4e-14 | 31.58 | unnamed protein product [Brassica rapa] | [more] |
Match Name | E-value | Identity | Description | |
E9Q784 | 4.1e-04 | 41.46 | Zinc finger CCCH domain-containing protein 13 OS=Mus musculus OX=10090 GN=Zc3h13... | [more] |
Match Name | E-value | Identity | Description | |
A0A3P6ADG6 | 4.5e-14 | 31.58 | Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA03T14418Z PE=4 SV=... | [more] |
M4DS83 | 1.3e-13 | 31.84 | Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | [more] |
A0A401QH01 | 9.4e-12 | 44.51 | Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00... | [more] |
A0A6P0MTT3 | 1.8e-10 | 48.86 | Uncharacterized protein OS=Symploca sp. SIO2C1 OX=2607783 GN=F6K14_34160 PE=4 SV... | [more] |
A0A3S1HVN5 | 3.0e-10 | 49.72 | Gly-zipper_Omp domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08... | [more] |
Match Name | E-value | Identity | Description | |
AT5G55680.1 | 1.1e-04 | 37.68 | glycine-rich protein | [more] |