Sed0026591.1 (mRNA) Chayote v1

Overview


Name	Sed0026591.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Heavy metal transport/detoxification superfamily protein
Location	LG03: 2180398 .. 2180792 (+)
Sequence length	222
RNA-Seq Expression	Sed0026591.1
Synteny	Sed0026591.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATGTGAGTTGGAGAAATTCCAGGTACTTGACTTAGTAGTTCCAAATTTTCTAAAGGGTTTTTGTTTTTTTGGCCATAGGTTGTAGAATTGAAGGTCTATTTGCATTGTGAAGAGTGCATCAAGAAGATTCTAAAAGCCATCAAGAAAATCCAAGGTTTGTGGCTCAATCTCTTCATCAATTTCTCCTCTGTTTTAAGCTTAACAAATCAATGAGTCCTTTGATTATTCTTTTTCTTATTCTCCATTTGCAGATATAGAGACTTATAATGTAGATATGCAGCTGAATAAGGTGATTGTTACAGGCAATGTCACTACAGAACAAGTCATCAAAGTTCTTCAGAAAATTAACAAAACTGCAATTCCATGGCAAGTTGATGAAGTAAATTAG

mRNA sequence

ATGGCTAATGTTGTAGAATTGAAGGTCTATTTGCATTGTGAAGAGTGCATCAAGAAGATTCTAAAAGCCATCAAGAAAATCCAAGATATAGAGACTTATAATGTAGATATGCAGCTGAATAAGGTGATTGTTACAGGCAATGTCACTACAGAACAAGTCATCAAAGTTCTTCAGAAAATTAACAAAACTGCAATTCCATGGCAAGTTGATGAAGTAAATTAG

Coding sequence (CDS)

ATGGCTAATGTTGTAGAATTGAAGGTCTATTTGCATTGTGAAGAGTGCATCAAGAAGATTCTAAAAGCCATCAAGAAAATCCAAGATATAGAGACTTATAATGTAGATATGCAGCTGAATAAGGTGATTGTTACAGGCAATGTCACTACAGAACAAGTCATCAAAGTTCTTCAGAAAATTAACAAAACTGCAATTCCATGGCAAGTTGATGAAGTAAATTAG

Protein sequence

MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKTAIPWQVDEVN

Homology

[Close]

BLAST of Sed0026591.1 vs. NCBI nr
Match: XP_004138408.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 9.6e-27
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          MANVVELKV+LHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT E+VIKVLQKI
Sbjct: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 NKTAIPWQVDEVN 74
           KTAIPWQ DE+N
Sbjct: 61 RKTAIPWQDDELN 73

[Close]

BLAST of Sed0026591.1 vs. NCBI nr
Match: XP_008456748.1 (PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          MANVVELKV+LHC+ECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT E+VIKVLQKI
Sbjct: 1  MANVVELKVFLHCDECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 NKTAIPWQVDEVN 74
           KTA+PWQ DE+N
Sbjct: 61 RKTAVPWQDDELN 73

[Close]

BLAST of Sed0026591.1 vs. NCBI nr
Match: XP_038884077.1 (copper transport protein ATX1 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          MANVVELKV+LHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT E+VIKVLQKI
Sbjct: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTKEEVIKVLQKI 60

Query: 61 NKTAIPWQVDEVN 74
           KTAIPWQ D +N
Sbjct: 61 RKTAIPWQADGLN 73

[Close]

BLAST of Sed0026591.1 vs. NCBI nr
Match: XP_022133451.1 (copper transport protein ATX1 [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 8.1e-26
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
           MANVVELKV LHCE+CIKKILKAIKKIQDIETYNVD QLNKV VTGNVTTE+VIKVL KI
Sbjct: 41  MANVVELKVGLHCEDCIKKILKAIKKIQDIETYNVDTQLNKVTVTGNVTTEEVIKVLHKI 100

Query: 61  NKTAIPWQVDEVN 74
           +KTAIPWQ DEVN
Sbjct: 101 SKTAIPWQADEVN 113

[Close]

BLAST of Sed0026591.1 vs. NCBI nr
Match: KAE8646572.1 (hypothetical protein Csa_004951, partial [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 6.9e-25
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKT 63
          VVELKV+LHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT E+VIKVLQKI KT
Sbjct: 1  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKT 60

Query: 64 AIPWQVDEVN 74
          AIPWQ DE+N
Sbjct: 61 AIPWQDDELN 70

[Close]

BLAST of Sed0026591.1 vs. ExPASy Swiss-Prot
Match: B3H6D0 (Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX=3702 GN=HIPP45 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  NVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINK 62
          ++VEL V + C+ C KK+ +AI K+  ++T  +D+   KV VTG V  E+V+K++++  +
Sbjct: 16 SIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGR 75

Query: 63 TAIPW 68
          TA  W
Sbjct: 76 TAEYW 80

[Close]

BLAST of Sed0026591.1 vs. ExPASy Swiss-Prot
Match: Q84J88 (Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX=3702 GN=HIPP36 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 7   LKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKTAIP 66
           L+V +HCE C +KI K + KI  + T N+D++  KV V GNV  E +IK + K  + A  
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRHAEL 93

Query: 67  WQVDEVN 74
           W     N
Sbjct: 94  WPTSMEN 100

[Close]

BLAST of Sed0026591.1 vs. ExPASy Swiss-Prot
Match: F4JZL7 (Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX=3702 GN=HIPP33 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 7  LKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKTAIP 66
          LKV +HC+ C +K+ K ++KI+ + T  +D +L KV V+GNV    +IK L K  K A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEI 73

Query: 67 W 68
          W
Sbjct: 74 W 74

[Close]

BLAST of Sed0026591.1 vs. ExPASy Swiss-Prot
Match: O82089 (Copper transport protein CCH OS=Arabidopsis thaliana OX=3702 GN=CCH PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.3e-05
Identity = 23/70 (32.86%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          MA  V LKV + C+ C+  + + + K++ +E++++D++  KV V GNV  E V + + K 
Sbjct: 1  MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61 NKTAIPWQVD 71
           K    W V+
Sbjct: 61 GKKTSYWPVE 70

[Close]

BLAST of Sed0026591.1 vs. ExPASy Swiss-Prot
Match: Q8LDS4 (Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=NAKR1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 8.2e-05
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 4   VVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKT 63
           VV L+V LHC+ C  K+ K + K++ + +YN+D    KV VTG+VT   V+  + K+ K 
Sbjct: 251 VVVLRVSLHCKGCAGKVKKHLSKLKGVTSYNIDFAAKKVTVTGDVTPLTVLASISKV-KN 310

Query: 64  AIPW 68
           A  W
Sbjct: 311 AQFW 313

[Close]

BLAST of Sed0026591.1 vs. ExPASy TrEMBL
Match: A0A0A0K8N1 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.6e-27
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          MANVVELKV+LHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT E+VIKVLQKI
Sbjct: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 NKTAIPWQVDEVN 74
           KTAIPWQ DE+N
Sbjct: 61 RKTAIPWQDDELN 73

[Close]

BLAST of Sed0026591.1 vs. ExPASy TrEMBL
Match: A0A1S3C423 (superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          MANVVELKV+LHC+ECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT E+VIKVLQKI
Sbjct: 1  MANVVELKVFLHCDECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 NKTAIPWQVDEVN 74
           KTA+PWQ DE+N
Sbjct: 61 RKTAVPWQDDELN 73

[Close]

BLAST of Sed0026591.1 vs. ExPASy TrEMBL
Match: A0A6J1BV52 (copper transport protein ATX1 OS=Momordica charantia OX=3673 GN=LOC111006024 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
           MANVVELKV LHCE+CIKKILKAIKKIQDIETYNVD QLNKV VTGNVTTE+VIKVL KI
Sbjct: 41  MANVVELKVGLHCEDCIKKILKAIKKIQDIETYNVDTQLNKVTVTGNVTTEEVIKVLHKI 100

Query: 61  NKTAIPWQVDEVN 74
           +KTAIPWQ DEVN
Sbjct: 101 SKTAIPWQADEVN 113

[Close]

BLAST of Sed0026591.1 vs. ExPASy TrEMBL
Match: A0A5D3C2A2 (Superoxide dismutase 1 copper chaperone OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001360 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.7e-25
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKT 63
          VVELKV+LHC+ECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT E+VIKVLQKI KT
Sbjct: 3  VVELKVFLHCDECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKT 62

Query: 64 AIPWQVDEVN 74
          A+PWQ DE+N
Sbjct: 63 AVPWQDDELN 72

[Close]

BLAST of Sed0026591.1 vs. ExPASy TrEMBL
Match: A0A2N9J4M6 (HMA domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60308 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.9e-23
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          M NVVELKV LHCEECIKKILKAIKK++DIETYNVD QLNKVIVTGN+TTE+VI+VLQKI
Sbjct: 1  MGNVVELKVGLHCEECIKKILKAIKKLEDIETYNVDTQLNKVIVTGNITTEEVIRVLQKI 60

Query: 61 NKTAIPWQVDEVN 74
           K+A  W+ DE+N
Sbjct: 61 GKSASTWEGDEMN 73

[Close]

BLAST of Sed0026591.1 vs. TAIR 10
Match: AT5G05365.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-23
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MANVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKI 60
          MANVVELKV LHC+ECI+KILKAIKKI+DIE Y+VD QLNKV VTGNVT EQVI+VLQK+
Sbjct: 1  MANVVELKVNLHCDECIRKILKAIKKIEDIEAYDVDTQLNKVTVTGNVTEEQVIRVLQKV 60

Query: 61 NKTAIPWQVD 71
           K A+ W  D
Sbjct: 61 RKAAVKWDQD 70

[Close]

BLAST of Sed0026591.1 vs. TAIR 10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  NVVELKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINK 62
          ++VEL V + C+ C KK+ +AI K+  ++T  +D+   KV VTG V  E+V+K++++  +
Sbjct: 16 SIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGR 75

Query: 63 TAIPW 68
          TA  W
Sbjct: 76 TAEYW 80

[Close]

BLAST of Sed0026591.1 vs. TAIR 10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 7   LKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKTAIP 66
           L+V +HCE C +KI K + KI  + T N+D++  KV V GNV  E +IK + K  + A  
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRHAEL 93

Query: 67  WQVDEVN 74
           W     N
Sbjct: 94  WPTSMEN 100

[Close]

BLAST of Sed0026591.1 vs. TAIR 10
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 7  LKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKTAIP 66
          LKV +HC+ C +K+ K ++KI+ + T  +D +L KV V+GNV    +IK L K  K A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEI 73

Query: 67 W 68
          W
Sbjct: 74 W 74

[Close]

BLAST of Sed0026591.1 vs. TAIR 10
Match: AT5G19090.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 7  LKVYLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEQVIKVLQKINKTAIP 66
          LKV +HC+ C +K+ K ++KI+ + T  +D +L KV V+GNV    +IK L K  K A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEI 73

Query: 67 W 68
          W
Sbjct: 74 W 74

The following BLAST results are available for this feature:

BLAST of Sed0026591.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138408.1	9.6e-27	89.04	protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Cucumis sativus]	[more]
XP_008456748.1	2.8e-26	86.30	PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo]	[more]
XP_038884077.1	3.6e-26	87.67	copper transport protein ATX1 [Benincasa hispida]	[more]
XP_022133451.1	8.1e-26	89.04	copper transport protein ATX1 [Momordica charantia]	[more]
KAE8646572.1	6.9e-25	88.57	hypothetical protein Csa_004951, partial [Cucumis sativus]	[more]

BLAST of Sed0026591.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H6D0	2.0e-06	38.46	Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX...	[more]
Q84J88	1.7e-05	40.30	Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX...	[more]
F4JZL7	2.2e-05	42.62	Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX...	[more]
O82089	6.3e-05	32.86	Copper transport protein CCH OS=Arabidopsis thaliana OX=3702 GN=CCH PE=1 SV=1	[more]
Q8LDS4	8.2e-05	40.63	Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=NAK...	[more]

BLAST of Sed0026591.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8N1	4.6e-27	89.04	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV...	[more]
A0A1S3C423	1.4e-26	86.30	superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 ...	[more]
A0A6J1BV52	3.9e-26	89.04	copper transport protein ATX1 OS=Momordica charantia OX=3673 GN=LOC111006024 PE=...	[more]
A0A5D3C2A2	9.7e-25	85.71	Superoxide dismutase 1 copper chaperone OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A2N9J4M6	6.9e-23	79.45	HMA domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60308 PE=4...	[more]

BLAST of Sed0026591.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05365.1	1.4e-23	75.71	Heavy metal transport/detoxification superfamily protein	[more]
AT3G56891.1	1.4e-07	38.46	Heavy metal transport/detoxification superfamily protein	[more]
AT5G27690.1	1.2e-06	40.30	Heavy metal transport/detoxification superfamily protein	[more]
AT5G19090.1	1.5e-06	42.62	Heavy metal transport/detoxification superfamily protein	[more]
AT5G19090.2	1.5e-06	42.62	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 10..62 e-value: 1.0E-10 score: 41.9
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 11..66 score: 9.259474
None	No IPR available	GENE3D	3.30.70.100		coord: 2..65 e-value: 9.3E-15 score: 56.6
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 2..67
None	No IPR available	PANTHER	PTHR22814:SF297	HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN	coord: 2..67
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 4..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0026591	Sed0026591	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0026591.1-exon	Sed0026591.1-exon-LG03:2180398..2180406	exon
Sed0026591.1-exon	Sed0026591.1-exon-LG03:2180483..2180558	exon
Sed0026591.1-exon	Sed0026591.1-exon-LG03:2180656..2180792	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0026591.1-cds	Sed0026591.1-cds-LG03:2180398..2180406	CDS
Sed0026591.1-cds	Sed0026591.1-cds-LG03:2180483..2180558	CDS
Sed0026591.1-cds	Sed0026591.1-cds-LG03:2180656..2180792	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0026591.1	Sed0026591.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding