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Sed0025256.3 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTACTCCAAATCTATCTGTATTTTTCTTAATCCTCATTTCCTTCGTCACTGTACAATTTTTAAACTCTGTTTCTCGCTGAGTGTTCTTCAGATTTTCTGAAAATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGTATGGGTTTTTGAATCTGCTCTTGTTTTTTTTTTTTTTTTGTTCTTTCTGATTTTGGGGTTTTTGTTTGCAGGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATGTAGGTTCTACACGTTTTTGTTTTGTTTTGTTTTCTCTGTTTTTAGTGGGCTCTGTTTTTATTTCTTATGAGATTTCGTTTTCGTGCAGTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGGTTCGTTTCAAGTTTTCTTTCCCTTACTCTTTCGATTTCCCTTCTCATCGAGTTATTTCTTCACCATTTTGATGGCGGATTTGTCTTCTTGATTAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGGTACTAATCGTTTCTCTGAAACCCACCAAATTCGTTTCGCCATTTTTGCTGTTCTTAGTGTTTCTTTCATCTGTATCTCTCAGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAAACCATGATATTAGGCTTCCTAATGACTGGATTTACTGAAATTGCAACAACAGTAGAAGATGAAAGGGTGTGATTAGGGTTTTACTAACTGCTGTTTTTATTATAGGGATTTGAATAGGGTAGAAGAGGATGATTAAGAAAGGTTTAGTTAGATGAATGGGGGTATTATAGGAATATATAGTAAAAGGGTATTTTGGTTATTTGGGTTAGGATATGGGATTAGCTTAGATTAGATATGATTAGATTAAATAAACTTGTGTTTAAGTTTGGGGGGGTTTTATTGGTATTTTGAGATTGGGCTTTAAAGACCTACTTAGAATACATGTGAGTGATGGGAAATGAGAGAAAAAGGAAATGGGGGGTTTTTCCTCTTTGATTTTGGGTTTAATTCTGCAAAAGAAAAGGGGATTATCAAGTTGGCATATGTGTTTTTTTGTTGTAAAAGGGCAAATTAGGAATTCTGTTTTGGGTTCCAATTTGTCCCCCTGCCCAACACTGCCCAAGCACTAATAAAATAATATATATATAAAAACTAATTTTCACTTTCCCTTTTTCTTTTCTTTCTTCTTCTCTTGACTGTTGTTGTACCATTTATGATATTCTATGTCTAGGCCAGTGTGTTTCTTAGGGGCCGTTTGTTTGACATATTTAAGGTCCTTTTTAGATTAAGGAGTTATATTGAGAAGTTATGTTGAGG GTACTCCAAATCTATCTGTATTTTTCTTAATCCTCATTTCCTTCGTCACTGTACAATTTTTAAACTCTGTTTCTCGCTGAGTGTTCTTCAGATTTTCTGAAAATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGGTTCGTTTCAAGTTTTCTTTCCCTTACTCTTTCGATTTCCCTTCTCATCGAGTTATTTCTTCACCATTTTGATGGCGGATTTGTCTTCTTGATTAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGGTACTAATCGTTTCTCTGAAACCCACCAAATTCGTTTCGCCATTTTTGCTGTTCTTAGTGTTTCTTTCATCTGTATCTCTCAGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAAACCATGATATTAGGCTTCCTAATGACTGGATTTACTGAAATTGCAACAACAGTAGAAGATGAAAGGGTGTGATTAGGGTTTTACTAACTGCTGTTTTTATTATAGGGATTTGAATAGGGTAGAAGAGGATGATTAAGAAAGGTTTAGTTAGATGAATGGGGGTATTATAGGAATATATAGTAAAAGGGTATTTTGGTTATTTGGGTTAGGATATGGGATTAGCTTAGATTAGATATGATTAGATTAAATAAACTTGTGTTTAAGTTTGGGGGGGTTTTATTGGTATTTTGAGATTGGGCTTTAAAGACCTACTTAGAATACATGTGAGTGATGGGAAATGAGAGAAAAAGGAAATGGGGGGTTTTTCCTCTTTGATTTTGGGTTTAATTCTGCAAAAGAAAAGGGGATTATCAAGTTGGCATATGTGTTTTTTTGTTGTAAAAGGGCAAATTAGGAATTCTGTTTTGGGTTCCAATTTGTCCCCCTGCCCAACACTGCCCAAGCACTAATAAAATAATATATATATAAAAACTAATTTTCACTTTCCCTTTTTCTTTTCTTTCTTCTTCTCTTGACTGTTGTTGTACCATTTATGATATTCTATGTCTAGGCCAGTGTGTTTCTTAGGGGCCGTTTGTTTGACATATTTAAGGTCCTTTTTAGATTAAGGAGTTATATTGAGAAGTTATGTTGAGG ATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGGTTCGTTTCAAGTTTTCTTTCCCTTACTCTTTCGATTTCCCTTCTCATCGAGTTATTTCTTCACCATTTTGATGGCGGATTTGTCTTCTTGA MAESLADGEFWLPPKFLSDEDLFVEKFGGNGVNNRSGGFGLNPFGFSPFGSPVESLFGETESDEDECIAGLANQMARSALQNLKSHGWGSLDSPQSTLCAAGNGCGCKQSSGKGSPNGSNPQLTFDLLCAAAGEVSKMQGYGFVNSPVSFPIKNQEAAAEVYQQIQASHFLHMRRQQILEQMKTKRSVRNHQAPMPQNRGRNSEFINGGNRLTAQPIWANPRKPTVNPSPPPGGSGMRAVFLGVPGGKRESAGTGVFLPRQAGAAVPSRKKPGSFQVFFPLLFRFPFSSSYFFTILMADLSS Homology
BLAST of Sed0025256.3 vs. NCBI nr
Match: XP_038883347.1 (uncharacterized protein LOC120074329 [Benincasa hispida]) HSP 1 Score: 330.9 bits (847), Expect = 1.2e-86 Identity = 202/325 (62.15%), Postives = 223/325 (68.62%), Query Frame = 0
BLAST of Sed0025256.3 vs. NCBI nr
Match: KAG7027367.1 (hypothetical protein SDJN02_11379 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 321.6 bits (823), Expect = 7.1e-84 Identity = 197/330 (59.70%), Postives = 223/330 (67.58%), Query Frame = 0
BLAST of Sed0025256.3 vs. NCBI nr
Match: XP_004147909.1 (uncharacterized protein LOC101214270 [Cucumis sativus] >KGN54326.1 hypothetical protein Csa_017917 [Cucumis sativus]) HSP 1 Score: 318.9 bits (816), Expect = 4.6e-83 Identity = 190/324 (58.64%), Postives = 219/324 (67.59%), Query Frame = 0
BLAST of Sed0025256.3 vs. NCBI nr
Match: XP_008448729.1 (PREDICTED: uncharacterized protein LOC103490808 [Cucumis melo] >KAA0045104.1 uncharacterized protein E6C27_scaffold30G00990 [Cucumis melo var. makuwa] >TYJ96224.1 uncharacterized protein E5676_scaffold78209G00120 [Cucumis melo var. makuwa]) HSP 1 Score: 318.2 bits (814), Expect = 7.9e-83 Identity = 195/325 (60.00%), Postives = 221/325 (68.00%), Query Frame = 0
BLAST of Sed0025256.3 vs. NCBI nr
Match: XP_022931961.1 (uncharacterized protein LOC111438229 [Cucurbita moschata]) HSP 1 Score: 316.6 bits (810), Expect = 2.3e-82 Identity = 197/332 (59.34%), Postives = 223/332 (67.17%), Query Frame = 0
BLAST of Sed0025256.3 vs. ExPASy TrEMBL
Match: A0A0A0L2G7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304230 PE=4 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 2.2e-83 Identity = 190/324 (58.64%), Postives = 219/324 (67.59%), Query Frame = 0
BLAST of Sed0025256.3 vs. ExPASy TrEMBL
Match: A0A5A7TPQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00120 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 3.8e-83 Identity = 195/325 (60.00%), Postives = 221/325 (68.00%), Query Frame = 0
BLAST of Sed0025256.3 vs. ExPASy TrEMBL
Match: A0A1S3BKD4 (uncharacterized protein LOC103490808 OS=Cucumis melo OX=3656 GN=LOC103490808 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 3.8e-83 Identity = 195/325 (60.00%), Postives = 221/325 (68.00%), Query Frame = 0
BLAST of Sed0025256.3 vs. ExPASy TrEMBL
Match: A0A6J1EV17 (uncharacterized protein LOC111438229 OS=Cucurbita moschata OX=3662 GN=LOC111438229 PE=4 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 1.1e-82 Identity = 197/332 (59.34%), Postives = 223/332 (67.17%), Query Frame = 0
BLAST of Sed0025256.3 vs. ExPASy TrEMBL
Match: A0A6J1DF19 (uncharacterized protein LOC111019479 OS=Momordica charantia OX=3673 GN=LOC111019479 PE=4 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 2.1e-81 Identity = 196/345 (56.81%), Postives = 218/345 (63.19%), Query Frame = 0
BLAST of Sed0025256.3 vs. TAIR 10
Match: AT3G54000.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 93.2 bits (230), Expect = 3.8e-19 Identity = 99/308 (32.14%), Postives = 138/308 (44.81%), Query Frame = 0
BLAST of Sed0025256.3 vs. TAIR 10
Match: AT3G54000.3 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 93.2 bits (230), Expect = 3.8e-19 Identity = 99/308 (32.14%), Postives = 138/308 (44.81%), Query Frame = 0
BLAST of Sed0025256.3 vs. TAIR 10
Match: AT3G54000.1 (CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18 Identity = 100/313 (31.95%), Postives = 139/313 (44.41%), Query Frame = 0
BLAST of Sed0025256.3 vs. TAIR 10
Match: AT5G59050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 6.8e-08 Identity = 70/226 (30.97%), Postives = 99/226 (43.81%), Query Frame = 0
BLAST of Sed0025256.3 vs. TAIR 10
Match: AT2G39870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 7.5e-07 Identity = 72/242 (29.75%), Postives = 113/242 (46.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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