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Sed0025256.2 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTACTCCAAATCTATCTGTATTTTTCTTAATCCTCATTTCCTTCGTCACTGTACAATTTTTAAACTCTGTTTCTCGCTGAGTGTTCTTCAGATTTTCTGAAAATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGTATGGGTTTTTGAATCTGCTCTTGTTTTTTTTTTTTTTTTGTTCTTTCTGATTTTGGGGTTTTTGTTTGCAGGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATGTAGGTTCTACACGTTTTTGTTTTGTTTTGTTTTCTCTGTTTTTAGTGGGCTCTGTTTTTATTTCTTATGAGATTTCGTTTTCGTGCAGTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGGTTCGTTTCAAGTTTTCTTTCCCTTACTCTTTCGATTTCCCTTCTCATCGAGTTATTTCTTCACCATTTTGATGGCGGATTTGTCTTCTTGATTAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGGTACTAATCGTTTCTCTGAAACCCACCAAATTCGTTTCGCCATTTTTGCTGTTCTTAGTGTTTCTTTCATCTGTATCTCTCAGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAAACCATGATATTAGGCTTCCTAATGACTGGATTTACTGAAATTGCAACAACAGTAGAAGATGAAAGGGTGTGATTAGGGTTTTACTAACTGCTGTTTTTATTATAGGGATTTGAATAGGGTAGAAGAGGATGATTAAGAAAGGTTTAGTTAGATGAATGGGGGTATTATAGGAATATATAGTAAAAGGGTATTTTGGTTATTTGGGTTAGGATATGGGATTAGCTTAGATTAGATATGATTAGATTAAATAAACTTGTGTTTAAGTTTGGGGGGGTTTTATTGGTATTTTGAGATTGGGCTTTAAAGACCTACTTAGAATACATGTGAGTGATGGGAAATGAGAGAAAAAGGAAATGGGGGGTTTTTCCTCTTTGATTTTGGGTTTAATTCTGCAAAAGAAAAGGGGATTATCAAGTTGGCATATGTGTTTTTTTGTTGTAAAAGGGCAAATTAGGAATTCTGTTTTGGGTTCCAATTTGTCCCCCTGCCCAACACTGCCCAAGCACTAATAAAATAATATATATATAAAAACTAATTTTCACTTTCCCTTTTTCTTTTCTTTCTTCTTCTCTTGACTGTTGTTGTACCATTTATGATATTCTATGTCTAGGCCAGTGTGTTTCTTAGGGGCCGTTTGTTTGACATATTTAAGGTCCTTTTTAGATTAAGGAGTTATATTGAGAAGTTATGTTGAGG GTACTCCAAATCTATCTGTATTTTTCTTAATCCTCATTTCCTTCGTCACTGTACAATTTTTAAACTCTGTTTCTCGCTGAGTGTTCTTCAGATTTTCTGAAAATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAAACCATGATATTAGGCTTCCTAATGACTGGATTTACTGAAATTGCAACAACAGTAGAAGATGAAAGGGTGTGATTAGGGTTTTACTAACTGCTGTTTTTATTATAGGGATTTGAATAGGGTAGAAGAGGATGATTAAGAAAGGTTTAGTTAGATGAATGGGGGTATTATAGGAATATATAGTAAAAGGGTATTTTGGTTATTTGGGTTAGGATATGGGATTAGCTTAGATTAGATATGATTAGATTAAATAAACTTGTGTTTAAGTTTGGGGGGGTTTTATTGGTATTTTGAGATTGGGCTTTAAAGACCTACTTAGAATACATGTGAGTGATGGGAAATGAGAGAAAAAGGAAATGGGGGGTTTTTCCTCTTTGATTTTGGGTTTAATTCTGCAAAAGAAAAGGGGATTATCAAGTTGGCATATGTGTTTTTTTGTTGTAAAAGGGCAAATTAGGAATTCTGTTTTGGGTTCCAATTTGTCCCCCTGCCCAACACTGCCCAAGCACTAATAAAATAATATATATATAAAAACTAATTTTCACTTTCCCTTTTTCTTTTCTTTCTTCTTCTCTTGACTGTTGTTGTACCATTTATGATATTCTATGTCTAGGCCAGTGTGTTTCTTAGGGGCCGTTTGTTTGACATATTTAAGGTCCTTTTTAGATTAAGGAGTTATATTGAGAAGTTATGTTGAGG ATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAAACCATGATATTAGGCTTCCTAATGACTGGATTTACTGA MAESLADGEFWLPPKFLSDEDLFVEKFGGNGVNNRSGGFGLNPFGFSPFGSPVESLFGETESDEDECIAGLANQMARSALQNLKSHGWGSLDSPQSTLCAAGNGCGCKQSSGKGSPNGSNPQLTFDLLCAAAGEVSKMQGYGFVNSPVSFPIKNQEAAAEVYQQIQASHFLHMRRQQILEQMKTKRSVRNHQAPMPQNRGRNSEFINGGNRLTAQPIWANPRKPTVNPSPPPGGSGMRAVFLGVPGGKRESAGTGVFLPRQAGAAVPSRKKPACSTVLVPARVMQALNLNIDDMYVQRTQPQHLQSRSSSVFNSRKNDSSVRARRETLLPPQKANLRSPAPAPPVNHDIRLPNDWIY Homology
BLAST of Sed0025256.2 vs. NCBI nr
Match: XP_038883347.1 (uncharacterized protein LOC120074329 [Benincasa hispida]) HSP 1 Score: 436.8 bits (1122), Expect = 1.8e-118 Identity = 259/402 (64.43%), Postives = 287/402 (71.39%), Query Frame = 0
BLAST of Sed0025256.2 vs. NCBI nr
Match: KAG7027367.1 (hypothetical protein SDJN02_11379 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 417.9 bits (1073), Expect = 8.6e-113 Identity = 257/409 (62.84%), Postives = 287/409 (70.17%), Query Frame = 0
BLAST of Sed0025256.2 vs. NCBI nr
Match: XP_004147909.1 (uncharacterized protein LOC101214270 [Cucumis sativus] >KGN54326.1 hypothetical protein Csa_017917 [Cucumis sativus]) HSP 1 Score: 417.2 bits (1071), Expect = 1.5e-112 Identity = 246/401 (61.35%), Postives = 281/401 (70.07%), Query Frame = 0
BLAST of Sed0025256.2 vs. NCBI nr
Match: XP_022931961.1 (uncharacterized protein LOC111438229 [Cucurbita moschata]) HSP 1 Score: 412.9 bits (1060), Expect = 2.8e-111 Identity = 257/411 (62.53%), Postives = 287/411 (69.83%), Query Frame = 0
BLAST of Sed0025256.2 vs. NCBI nr
Match: XP_022151566.1 (uncharacterized protein LOC111019479 [Momordica charantia]) HSP 1 Score: 412.9 bits (1060), Expect = 2.8e-111 Identity = 255/423 (60.28%), Postives = 280/423 (66.19%), Query Frame = 0
BLAST of Sed0025256.2 vs. ExPASy TrEMBL
Match: A0A0A0L2G7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304230 PE=4 SV=1) HSP 1 Score: 417.2 bits (1071), Expect = 7.1e-113 Identity = 246/401 (61.35%), Postives = 281/401 (70.07%), Query Frame = 0
BLAST of Sed0025256.2 vs. ExPASy TrEMBL
Match: A0A6J1DF19 (uncharacterized protein LOC111019479 OS=Momordica charantia OX=3673 GN=LOC111019479 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 1.3e-111 Identity = 255/423 (60.28%), Postives = 280/423 (66.19%), Query Frame = 0
BLAST of Sed0025256.2 vs. ExPASy TrEMBL
Match: A0A6J1EV17 (uncharacterized protein LOC111438229 OS=Cucurbita moschata OX=3662 GN=LOC111438229 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 1.3e-111 Identity = 257/411 (62.53%), Postives = 287/411 (69.83%), Query Frame = 0
BLAST of Sed0025256.2 vs. ExPASy TrEMBL
Match: A0A5A7TPQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00120 PE=4 SV=1) HSP 1 Score: 412.1 bits (1058), Expect = 2.3e-111 Identity = 249/402 (61.94%), Postives = 283/402 (70.40%), Query Frame = 0
BLAST of Sed0025256.2 vs. ExPASy TrEMBL
Match: A0A1S3BKD4 (uncharacterized protein LOC103490808 OS=Cucumis melo OX=3656 GN=LOC103490808 PE=4 SV=1) HSP 1 Score: 412.1 bits (1058), Expect = 2.3e-111 Identity = 249/402 (61.94%), Postives = 283/402 (70.40%), Query Frame = 0
BLAST of Sed0025256.2 vs. TAIR 10
Match: AT3G54000.1 (CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 114.4 bits (285), Expect = 1.9e-25 Identity = 111/326 (34.05%), Postives = 153/326 (46.93%), Query Frame = 0
BLAST of Sed0025256.2 vs. TAIR 10
Match: AT3G54000.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 90.5 bits (223), Expect = 2.9e-18 Identity = 98/306 (32.03%), Postives = 138/306 (45.10%), Query Frame = 0
BLAST of Sed0025256.2 vs. TAIR 10
Match: AT3G54000.3 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 90.5 bits (223), Expect = 2.9e-18 Identity = 98/306 (32.03%), Postives = 138/306 (45.10%), Query Frame = 0
BLAST of Sed0025256.2 vs. TAIR 10
Match: AT5G59050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 78.6 bits (192), Expect = 1.2e-14 Identity = 96/311 (30.87%), Postives = 139/311 (44.69%), Query Frame = 0
BLAST of Sed0025256.2 vs. TAIR 10
Match: AT4G02830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. ) HSP 1 Score: 60.5 bits (145), Expect = 3.3e-09 Identity = 64/178 (35.96%), Postives = 83/178 (46.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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