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Sed0025256.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTACTCCAAATCTATCTGTATTTTTCTTAATCCTCATTTCCTTCGTCACTGTACAATTTTTAAACTCTGTTTCTCGCTGAGTGTTCTTCAGATTTTCTGAAAATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGTATGGGTTTTTGAATCTGCTCTTGTTTTTTTTTTTTTTTTGTTCTTTCTGATTTTGGGGTTTTTGTTTGCAGGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATGTAGGTTCTACACGTTTTTGTTTTGTTTTGTTTTCTCTGTTTTTAGTGGGCTCTGTTTTTATTTCTTATGAGATTTCGTTTTCGTGCAGTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGGTTCGTTTCAAGTTTTCTTTCCCTTACTCTTTCGATTTCCCTTCTCATCGAGTTATTTCTTCACCATTTTGATGGCGGATTTGTCTTCTTGATTAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGGTACTAATCGTTTCTCTGAAACCCACCAAATTCGTTTCGCCATTTTTGCTGTTCTTAGTGTTTCTTTCATCTGTATCTCTCAGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAAACCATGATATTAGGCTTCCTAATGACTGGATTTACTGAAATTGCAACAACAGTAGAAGATGAAAGGGTGTGATTAGGGTTTTACTAACTGCTGTTTTTATTATAGGGATTTGAATAGGGTAGAAGAGGATGATTAAGAAAGGTTTAGTTAGATGAATGGGGGTATTATAGGAATATATAGTAAAAGGGTATTTTGGTTATTTGGGTTAGGATATGGGATTAGCTTAGATTAGATATGATTAGATTAAATAAACTTGTGTTTAAGTTTGGGGGGGTTTTATTGGTATTTTGAGATTGGGCTTTAAAGACCTACTTAGAATACATGTGAGTGATGGGAAATGAGAGAAAAAGGAAATGGGGGGTTTTTCCTCTTTGATTTTGGGTTTAATTCTGCAAAAGAAAAGGGGATTATCAAGTTGGCATATGTGTTTTTTTGTTGTAAAAGGGCAAATTAGGAATTCTGTTTTGGGTTCCAATTTGTCCCCCTGCCCAACACTGCCCAAGCACTAATAAAATAATATATATATAAAAACTAATTTTCACTTTCCCTTTTTCTTTTCTTTCTTCTTCTCTTGACTGTTGTTGTACCATTTATGATATTCTATGTCTAGGCCAGTGTGTTTCTTAGGGGCCGTTTGTTTGACATATTTAAGGTCCTTTTTAGATTAAGGAGTTATATTGAGAAGTTATGTTGAGG GTACTCCAAATCTATCTGTATTTTTCTTAATCCTCATTTCCTTCGTCACTGTACAATTTTTAAACTCTGTTTCTCGCTGAGTGTTCTTCAGATTTTCTGAAAATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGGTACTAATCGTTTCTCTGAAACCCACCAAATTCGTTTCGCCATTTTTGCTGTTCTTAGTGTTTCTTTCATCTGTATCTCTCAGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAAACCATGATATTAGGCTTCCTAATGACTGGATTTACTGAAATTGCAACAACAGTAGAAGATGAAAGGGTGTGATTAGGGTTTTACTAACTGCTGTTTTTATTATAGGGATTTGAATAGGGTAGAAGAGGATGATTAAGAAAGGTTTAGTTAGATGAATGGGGGTATTATAGGAATATATAGTAAAAGGGTATTTTGGTTATTTGGGTTAGGATATGGGATTAGCTTAGATTAGATATGATTAGATTAAATAAACTTGTGTTTAAGTTTGGGGGGGTTTTATTGGTATTTTGAGATTGGGCTTTAAAGACCTACTTAGAATACATGTGAGTGATGGGAAATGAGAGAAAAAGGAAATGGGGGGTTTTTCCTCTTTGATTTTGGGTTTAATTCTGCAAAAGAAAAGGGGATTATCAAGTTGGCATATGTGTTTTTTTGTTGTAAAAGGGCAAATTAGGAATTCTGTTTTGGGTTCCAATTTGTCCCCCTGCCCAACACTGCCCAAGCACTAATAAAATAATATATATATAAAAACTAATTTTCACTTTCCCTTTTTCTTTTCTTTCTTCTTCTCTTGACTGTTGTTGTACCATTTATGATATTCTATGTCTAGGCCAGTGTGTTTCTTAGGGGCCGTTTGTTTGACATATTTAAGGTCCTTTTTAGATTAAGGAGTTATATTGAGAAGTTATGTTGAGG ATGGCTGAGAGTTTGGCCGATGGCGAGTTCTGGCTTCCGCCCAAGTTTCTCAGCGACGAGGATTTGTTCGTCGAGAAATTTGGGGGAAACGGTGTTAACAATCGGAGCGGCGGATTTGGGCTGAACCCGTTTGGATTTAGCCCTTTTGGTTCGCCGGTCGAGTCTCTGTTTGGCGAAACGGAGAGCGATGAGGACGAATGCATCGCTGGATTGGCGAATCAAATGGCGCGTTCGGCTCTCCAGAACCTTAAATCTCATGGTTGGGGTTCTTTGGATTCTCCACAGTCAACGTTGTGTGCTGCTGGAAATGGGTGCGGCTGTAAACAGAGCTCCGGCAAGGGAAGCCCTAATGGGTCTAATCCGCAGCTCACTTTTGATTTGCTCTGCGCCGCCGCTGGGGAGGTCTCGAAGATGCAGGGTTATGGGTTTGTTAACTCTCCGGTGAGTTTTCCGATTAAAAACCAAGAGGCTGCCGCCGAAGTTTATCAGCAGATTCAGGCTTCTCATTTTCTTCACATGAGACGGCAACAGATTCTCGAGCAAATGAAGACGAAGAGATCTGTTAGAAACCATCAGGCTCCAATGCCGCAGAACAGAGGAAGAAATAGCGAGTTCATCAATGGCGGTAACCGGTTAACGGCTCAACCCATTTGGGCTAATCCAAGAAAACCAACCGTTAATCCGAGCCCACCACCGGGCGGTTCCGGCATGCGAGCGGTGTTTCTCGGCGTTCCCGGCGGGAAGAGGGAAAGCGCCGGCACCGGCGTGTTTCTGCCTCGACAAGCCGGCGCCGCCGTTCCATCCCGGAAGAAACCAGCTTGTTCGACTGTGTTAGTTCCTGCTAGAGTGATGCAGGCTCTGAATCTAAACATTGACGACATGTACGTTCAAAGAACTCAACCCCAACATCTTCAATCTCGTTCATCTTCCGTTTTCAACTCACGAAAGAACGGTACTAATCGTTTCTCTGAAACCCACCAAATTCGTTTCGCCATTTTTGCTGTTCTTAGTGTTTCTTTCATCTGTATCTCTCAGATTCCTCCGTTCGGGCTAGGAGAGAAACCTTGTTGCCGCCGCAGAAGGCGAATCTCCGGTCGCCGGCGCCGGCGCCGCCAGTAA MAESLADGEFWLPPKFLSDEDLFVEKFGGNGVNNRSGGFGLNPFGFSPFGSPVESLFGETESDEDECIAGLANQMARSALQNLKSHGWGSLDSPQSTLCAAGNGCGCKQSSGKGSPNGSNPQLTFDLLCAAAGEVSKMQGYGFVNSPVSFPIKNQEAAAEVYQQIQASHFLHMRRQQILEQMKTKRSVRNHQAPMPQNRGRNSEFINGGNRLTAQPIWANPRKPTVNPSPPPGGSGMRAVFLGVPGGKRESAGTGVFLPRQAGAAVPSRKKPACSTVLVPARVMQALNLNIDDMYVQRTQPQHLQSRSSSVFNSRKNGTNRFSETHQIRFAIFAVLSVSFICISQIPPFGLGEKPCCRRRRRISGRRRRRRQ Homology
BLAST of Sed0025256.1 vs. NCBI nr
Match: XP_038883347.1 (uncharacterized protein LOC120074329 [Benincasa hispida]) HSP 1 Score: 397.1 bits (1019), Expect = 1.6e-106 Identity = 236/362 (65.19%), Postives = 261/362 (72.10%), Query Frame = 0
BLAST of Sed0025256.1 vs. NCBI nr
Match: KAG7027367.1 (hypothetical protein SDJN02_11379 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 393.3 bits (1009), Expect = 2.4e-105 Identity = 235/367 (64.03%), Postives = 262/367 (71.39%), Query Frame = 0
BLAST of Sed0025256.1 vs. NCBI nr
Match: XP_022931961.1 (uncharacterized protein LOC111438229 [Cucurbita moschata]) HSP 1 Score: 388.3 bits (996), Expect = 7.6e-104 Identity = 235/369 (63.69%), Postives = 262/369 (71.00%), Query Frame = 0
BLAST of Sed0025256.1 vs. NCBI nr
Match: XP_004147909.1 (uncharacterized protein LOC101214270 [Cucumis sativus] >KGN54326.1 hypothetical protein Csa_017917 [Cucumis sativus]) HSP 1 Score: 383.3 bits (983), Expect = 2.5e-102 Identity = 224/361 (62.05%), Postives = 255/361 (70.64%), Query Frame = 0
BLAST of Sed0025256.1 vs. NCBI nr
Match: XP_008448729.1 (PREDICTED: uncharacterized protein LOC103490808 [Cucumis melo] >KAA0045104.1 uncharacterized protein E6C27_scaffold30G00990 [Cucumis melo var. makuwa] >TYJ96224.1 uncharacterized protein E5676_scaffold78209G00120 [Cucumis melo var. makuwa]) HSP 1 Score: 379.4 bits (973), Expect = 3.5e-101 Identity = 228/362 (62.98%), Postives = 257/362 (70.99%), Query Frame = 0
BLAST of Sed0025256.1 vs. ExPASy TrEMBL
Match: A0A6J1EV17 (uncharacterized protein LOC111438229 OS=Cucurbita moschata OX=3662 GN=LOC111438229 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 3.7e-104 Identity = 235/369 (63.69%), Postives = 262/369 (71.00%), Query Frame = 0
BLAST of Sed0025256.1 vs. ExPASy TrEMBL
Match: A0A0A0L2G7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G304230 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 1.2e-102 Identity = 224/361 (62.05%), Postives = 255/361 (70.64%), Query Frame = 0
BLAST of Sed0025256.1 vs. ExPASy TrEMBL
Match: A0A5A7TPQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00120 PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 1.7e-101 Identity = 228/362 (62.98%), Postives = 257/362 (70.99%), Query Frame = 0
BLAST of Sed0025256.1 vs. ExPASy TrEMBL
Match: A0A1S3BKD4 (uncharacterized protein LOC103490808 OS=Cucumis melo OX=3656 GN=LOC103490808 PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 1.7e-101 Identity = 228/362 (62.98%), Postives = 257/362 (70.99%), Query Frame = 0
BLAST of Sed0025256.1 vs. ExPASy TrEMBL
Match: A0A6J1HS25 (uncharacterized protein LOC111466227 OS=Cucurbita maxima OX=3661 GN=LOC111466227 PE=4 SV=1) HSP 1 Score: 376.7 bits (966), Expect = 1.1e-100 Identity = 226/368 (61.41%), Postives = 258/368 (70.11%), Query Frame = 0
BLAST of Sed0025256.1 vs. TAIR 10
Match: AT3G54000.1 (CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 114.4 bits (285), Expect = 2.0e-25 Identity = 111/326 (34.05%), Postives = 153/326 (46.93%), Query Frame = 0
BLAST of Sed0025256.1 vs. TAIR 10
Match: AT3G54000.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 90.5 bits (223), Expect = 3.1e-18 Identity = 98/306 (32.03%), Postives = 138/306 (45.10%), Query Frame = 0
BLAST of Sed0025256.1 vs. TAIR 10
Match: AT3G54000.3 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 90.5 bits (223), Expect = 3.1e-18 Identity = 98/306 (32.03%), Postives = 138/306 (45.10%), Query Frame = 0
BLAST of Sed0025256.1 vs. TAIR 10
Match: AT5G59050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 7.8e-14 Identity = 87/271 (32.10%), Postives = 125/271 (46.13%), Query Frame = 0
BLAST of Sed0025256.1 vs. TAIR 10
Match: AT2G39870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07 Identity = 79/269 (29.37%), Postives = 126/269 (46.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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