Sed0024384.1 (mRNA) Chayote v1

Overview


Name	Sed0024384.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	nucleolar and coiled-body phosphoprotein 1 isoform X1
Location	LG12: 32239275 .. 32244697 (+)
Sequence length	1179
RNA-Seq Expression	Sed0024384.1
Synteny	Sed0024384.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCCGACGAAGCCACATCCCTGGACCTGGAGCCGACGGCTCTTCTTCTTCGCGCCGTAGCTCTCTTTTTGCAGCGCAATGGCTTCTCTAAAACGCAAAAAAGGTTTGTTCCGAAGCGCAGATTGAGGTTCGTACTATGGGGGATGGGGGATTTGTTGGTTAATATTAGTGGATTTCATATATTGCTCATGATGATATGCAATGCAATAGATGTTTATTTCCACAGATTGGAGTTTGGAACTTGATTCTATTCGAACAAGCTTACTTCTATTAGTAATTTATAGTAACATCATATTTCTCTTCAGTGCTGCAAATTTTTGCTCAAATTTGCTGTTTGTTGTAATCAATGAAATGTTGGTAGTTGGGGTTGGGAACTGTATTTTAACCTTGTTCTAGTGTTAGATTATTATTCTCTCACAATTTAGGTCCCGTTTGATAATCAATTGGTTTTTTGTTTTTGGTTTATGAAATTTAAGTTTATTTCCACTCAAATTTCTTACCATGTGCTTCATCTTTCCTACCATGTATCTATTTTTCCTTATGAAAGTAGTTGAATACTAACCAAATTTAAAAAACAAAAAACCAAATTAATTTTTGTCGCTGTAATTGAAACAATTTCTGTTTTCGGTTGCAGAAAGATTTCTCAAAGGATTTATTGCTCAGTCTCGAGGAAATGTGCCACAAGCATTTAAAGAAATGGTAGGAACAACGATTCTGTTGATTCTTGTTTGTTAAACCCAAAAGATAAATTACTAATTTTTCATATGTATATGCTTGGAATAGTATGTCTAAATGCTGTTTTGAGATTGTCCTCAAAGGGTGACAGAATGGTTGAAGACTTAGGATTTGAGGATATGCTCCATTAAGGTCTCAGTTTCGAGACTCACTCGTGACATTACTCCATCGATGTCTCCAGTGCCTAGCCTAGGGACAGGCGTAGTAACCCTTGTTTCAAAAAAAAAAAATGCTGTTTTGAGATTGAAGTATAAATGCTAGCTGATCGTTTGTGTTTTTTTTTTCTCGATCTTCTGATATTTCTATTTTAAATTTTTTTTAGTATTATGTTTCCTCTATTTTTTTTTTTAAGTAACCAGATTCTGTACCAGTATAAACTGGTGAAGCATGCTGTTACATGTTGCAGGTAGCTAAGTTTTAAAGCAAATGCTGGTTCTGCTGGTCGTTTAGATTACTGTTCCCATCATCTTTCATAGTAGATGCCCCTAAACCATTGTATCTATGTTGGAAGTGATAGTATTAGCGACCTATGTGATTGCCTAGACTTTGAAATTCCGCATCGTGTTTCTTTGATTTCTTTTGCCCCAATCTTAATAATTCATTTAGATTTCTTTGATTTCTCTGATCTAGATAAATTCATTCATTTATCTAATTTTTAAATTCTAATATGCAGCAGCCAAGCCATCAGAAAACCAGGTATCCACATGTTGTCACGATTTTTTAATACAACATGAAATAATTGATTTAAGGTGATTTTGCATGTATATTAAAAAAAAGTAAAATAATTCCATGTATAGCACAATTCCCAAACTTATTCATTTGTGACACAAAAATGATTGAAGTCTATCAATTTATATCGTTCAATCACTCAAAATCGATTGAAGTTTATCAGTTGAACTGATAGAAGTCTAAAGTCTATCAGTTCAACTGATAGAAGTCTTAAATCTGTCAGTTTAACTGATAGAAGTCTAATAATTTTAGAATAGGAATTTTGGGCAAAATGTGCTATGAATGAAATTATTTTTAAAAATGTGTTATATTGTAATGAAGAGCTAAAAATATGCTATAGAGGACAAATTCCCTTGATTTAATTGAGTATCTCTTATTGTGCTGGATTTGATATAGTAGATGAAGAAATAGTGAAGGAGGTTGTTGATGATAGAGTTTCTGAAGCACAAGAGGAGCCTACAAAGAAGTCCAAGGATAAAAAGAAAACGAAAAAGAAAGCAGTTCCTGAAACTCATGTTGACACCGATTCTGTCCTTATCGATTGTGCGAAAAACTCCAAGGGCACCGAACCTTCAGTAGGCGCCATTGTCCACGAGGAGGTAGGAACGAAATCTAAGGATAAAAAGAAAAAGAACAAAGACAACTTAGAGTCTGTTGCTACAATTTCCGAAGATGCAACTGTTTCAAAAGACTATCAAGCTGTAGATTCCATTGAATTGAATGGTAATATCGCCACCCTCGAAGAGAAGGTTGTCAAATCAAAAACTAAGAAGAAAAAGGATGGTCGAGATTTAAGTGATGAAACGAAGGAAACTGAGAACAAAAATGATGGTACCAAGGCGCTACATGAAGACGAACACGATGAGAATTCTAAGAAAAGGAAAAGGTTGGTTTCTGAAGATCGTGACAGTCATACCGATGATGAGAAAGAAACTGAAGACGCCAAACGTAGAAAATTAGTGGAGACTGATGTAAATGATCTAAGTAGGAGCACGAGCAATGAGCTTTCTCAGCAAACAAATGAGCACATTGAAAAAACTGCAGAGAAAACTTCTACAAAGAAAGCCCTGAAGAAACTTTCAAATGGCTCAGCTGAGGTTAGTTTATATTGTCATCCTGTGGCTGTCAAATTTCTTGATCTACGCAAATTCTTTTGTAGAACTATTTTGAGGCATTAATATCTTATATGCAGAAGACATAGTTGTTTAGGCTTTAGGATTTCAATCCTTTTAATATTATTGAATTATCAATTGCCGTTGAGAGAACACAGCATCTGTATAAAAAAATGATGCTGTTATTCCGTTGCAGGCATAGAACAAATCCATTCCTTTCTCTAATTTTCGAGCTGTTAGTTTGATTTTTTGTCAAGCAGTTCGCAGTTTTGGGGAGCAAGGTTTTACATTTGTTTTTCTCTTATTCCTTTTTTCTCAATTTTTCCGAGATTAAACTAGATTTTTTCAATTTAAAGGATAAGAGATTGCATCTGCGTAAGGGATGGAGACCCTTCAAAGATATTGAAAAACATAATAAAACGGGCATGCCTAACATCCGACAAATACCGTTCTCACCGGGCAGCCTTGTTGGTTGGGGCTTGGTGCTTTCAAGACATGTTTCTTTGGAGGTTTGAAGTTCAAGCCCCACAAATGAGTTTGTTATGAAAACGGCAATCAACAATCGATAAACGAAGATATGAAAACAGATAACGATAAACGTGAGAGAATAAGAAGAAACAACACAGAGAATTTACGTGGTTACTCAACGTTATGTCGGCTAGTACACGGGTAGAGAGGGGCGCGGAGTTTTATCAAGGAGAACGAAATTATAGAGTTTACAGAATGAATGTCATCATACGGCTAGGGTTTAATTCGAGTTTATACAGGCACTCTCATTAAACTCTATTACATAATGCGTAAGCATTATACAGAAAGTGGATGTGGACACGCGCTGTGGAAATAGAATGTTGTTGCGCAAACACATGCGAAACCGCTGCAATGCGAGATGTGTTTGCGCGCGGGATGTGCTAAGCGAATGCAGATGCATTCACGCAAGCGAATGTGGAATGCGTTTTCTCTCGAGTCATCAATGCGTTCAAGGCATAATACAACAAAGTTCAATTATGAAATTTCTTGTTGTCTCTCGGGTCTGGACCTTGGGACAGGCGGGGGTGCCCTTGAACATAGTGGAGTGAAGCTTTGATTTTTCTAATTTTTTTTTATAAAAAAGATTCAAATAGCAGCTCTTCTACTCCCAAATTTCTTCTTTCTTTGAGATGTTACTATTTTTTTTATTGCATATGGAAGAAAGCAGTTTTGTGATTATAGTAGGAGAATGAAAAACAGAAATGTTAAACAATCAAGAAAAAAAGGAAAAGTTTACCTTTACCTTCGACTTTAATCTTTCTCTCAAGGGCAGAGGTTCATTTTACACTATACAAAATCAACTTTACTGAAAGACTGTTTAATTGCAGCCGAAGACCATTAATGCATTTCAAAGTGTGAAAGTAGATGATGTGACATTTGCTAATGAGAAACTTGCAGATAATTCTTACTGGGCCAAGGTGGGATTACCTATATTTTTGGCCTTTTTGCCGCAATGCGGCTCGTTTCTTCTCACTATAATCTTTTGTTTCTTATTTCTCATCTGTCATACTGCACAGGGTGGGGCCGAGATTGGATATGGAGCAAAAGCTCAAGAAGTTCTCGGGCAGGTTAAAGGAAGGTAATTTTATTCATTGAAGTTTTCTTGGTTGATATAATCAATTTATCTCAATCCACGGCTTGATTGTTTTTTAGTGGAGTGATGATTTTAACATGGAGTACGTCTGGAGTTCAAATCACTGTCAAATCATTTCTTCTCTAATTAATATTGTTTTCCACTCATTGGACATCTCTCCAATTTCTATGCCCACGAGTGAAGATATTGTTAGTTGATTAGTTAATACAATTAAATTTACCTCAACTTATGAGTGTAAGCTTTTGGTTGATTGGTGATTTAACATGATTCAATAGGTTTATATTTGGTTCGTAGTGTTTTGTAACAATTGCTTGTGTTCTAAAGCTTGAATGCTAAATACTTTAATCGAGATGAGAGAGGGGTGATAATTTGAATAAAAGAAACACCTGTTTTTTCAGTTCAACAATTAGGGAGATTTGGACTCGTAAGTAATGTTTTAAAAGGCTAAAGGTGGCCTTGAGGCTTTTTCTCTTGATGAGGCGAGACGTAAGTCTCGTGGCGGTATGAGGCGCCTATTTTAATAAAAAATATAAATTTGTGTAAACATGTATGGTAAAACATTATACTTACGTAAAAATACACATAACACTAACACTAACATGATTGAGTTTTTTTGGAATAAGAAACAATTTCATTTATGAATGAAAAATAAAGGAATTCTCCAAGCACTTATAGTGAATACAACAAAGAAATCCAAAAGGAGATGATAGAGGAAAATAAGCCATAAAATGATCAATGACGATTTTGAAATATGATTGCATCTTTCTAACAAAAGAATTCATAAGAGAAAATCTATATTGTTATCGTTCAAGCCCTTATATTATAAAAATGAAAAATATTAATACTATTTTTCTAATTATTCTACGAGGCGTAGGGATTTTAAGCCTCAGCGTTATCATCGAGGCGTAAGTTTCTCCTATGTGAGGCATAAGCTTCTTATGATCCAATAAAGGCTTAAAAATCGAGGCTAAAAGTTAGATCAATAACCTTTTAAAACATGGCTCGTTAGTACACACTTATGCCGGTTAAGTTAGAAACACATTATTGGGTTATGAACTTTATCTCGATTCTCAAATTTAGTAGATACTCGCTGATTCAAATGTACTAGTTTCTCAGGGATTTTCGACACGAAAAGACCAAGAAGAAACGTGGATCGTACCGAGGTGGAGTTATTGATCTGCAATCTCACTCAGTAAAGTTCAACTACGCTGATGATGAATAA

mRNA sequence

ATGTCTGCCGACGAAGCCACATCCCTGGACCTGGAGCCGACGGCTCTTCTTCTTCGCGCCGTAGCTCTCTTTTTGCAGCGCAATGGCTTCTCTAAAACGCAAAAAAGGTTTGTTCCGAAGCGCAGATTGAGGTTCAAAGATTTCTCAAAGGATTTATTGCTCAGTCTCGAGGAAATGTGCCACAAGCATTTAAAGAAATGCAGCCAAGCCATCAGAAAACCAGATGAAGAAATAGTGAAGGAGGTTGTTGATGATAGAGTTTCTGAAGCACAAGAGGAGCCTACAAAGAAGTCCAAGGATAAAAAGAAAACGAAAAAGAAAGCAGTTCCTGAAACTCATGTTGACACCGATTCTGTCCTTATCGATTGTGCGAAAAACTCCAAGGGCACCGAACCTTCAGTAGGCGCCATTGTCCACGAGGAGGTAGGAACGAAATCTAAGGATAAAAAGAAAAAGAACAAAGACAACTTAGAGTCTGTTGCTACAATTTCCGAAGATGCAACTGTTTCAAAAGACTATCAAGCTGTAGATTCCATTGAATTGAATGGTAATATCGCCACCCTCGAAGAGAAGGTTGTCAAATCAAAAACTAAGAAGAAAAAGGATGGTCGAGATTTAAGTGATGAAACGAAGGAAACTGAGAACAAAAATGATGGTACCAAGGCGCTACATGAAGACGAACACGATGAGAATTCTAAGAAAAGGAAAAGGTTGGTTTCTGAAGATCGTGACAGTCATACCGATGATGAGAAAGAAACTGAAGACGCCAAACGTAGAAAATTAGTGGAGACTGATGTAAATGATCTAAGTAGGAGCACGAGCAATGAGCTTTCTCAGCAAACAAATGAGCACATTGAAAAAACTGCAGAGAAAACTTCTACAAAGAAAGCCCTGAAGAAACTTTCAAATGGCTCAGCTGAGCCGAAGACCATTAATGCATTTCAAAGTGTGAAAGTAGATGATGTGACATTTGCTAATGAGAAACTTGCAGATAATTCTTACTGGGCCAAGGGTGGGGCCGAGATTGGATATGGAGCAAAAGCTCAAGAAGTTCTCGGGCAGGTTAAAGGAAGGGATTTTCGACACGAAAAGACCAAGAAGAAACGTGGATCGTACCGAGGTGGAGTTATTGATCTGCAATCTCACTCAGTAAAGTTCAACTACGCTGATGATGAATAA

Coding sequence (CDS)

ATGTCTGCCGACGAAGCCACATCCCTGGACCTGGAGCCGACGGCTCTTCTTCTTCGCGCCGTAGCTCTCTTTTTGCAGCGCAATGGCTTCTCTAAAACGCAAAAAAGGTTTGTTCCGAAGCGCAGATTGAGGTTCAAAGATTTCTCAAAGGATTTATTGCTCAGTCTCGAGGAAATGTGCCACAAGCATTTAAAGAAATGCAGCCAAGCCATCAGAAAACCAGATGAAGAAATAGTGAAGGAGGTTGTTGATGATAGAGTTTCTGAAGCACAAGAGGAGCCTACAAAGAAGTCCAAGGATAAAAAGAAAACGAAAAAGAAAGCAGTTCCTGAAACTCATGTTGACACCGATTCTGTCCTTATCGATTGTGCGAAAAACTCCAAGGGCACCGAACCTTCAGTAGGCGCCATTGTCCACGAGGAGGTAGGAACGAAATCTAAGGATAAAAAGAAAAAGAACAAAGACAACTTAGAGTCTGTTGCTACAATTTCCGAAGATGCAACTGTTTCAAAAGACTATCAAGCTGTAGATTCCATTGAATTGAATGGTAATATCGCCACCCTCGAAGAGAAGGTTGTCAAATCAAAAACTAAGAAGAAAAAGGATGGTCGAGATTTAAGTGATGAAACGAAGGAAACTGAGAACAAAAATGATGGTACCAAGGCGCTACATGAAGACGAACACGATGAGAATTCTAAGAAAAGGAAAAGGTTGGTTTCTGAAGATCGTGACAGTCATACCGATGATGAGAAAGAAACTGAAGACGCCAAACGTAGAAAATTAGTGGAGACTGATGTAAATGATCTAAGTAGGAGCACGAGCAATGAGCTTTCTCAGCAAACAAATGAGCACATTGAAAAAACTGCAGAGAAAACTTCTACAAAGAAAGCCCTGAAGAAACTTTCAAATGGCTCAGCTGAGCCGAAGACCATTAATGCATTTCAAAGTGTGAAAGTAGATGATGTGACATTTGCTAATGAGAAACTTGCAGATAATTCTTACTGGGCCAAGGGTGGGGCCGAGATTGGATATGGAGCAAAAGCTCAAGAAGTTCTCGGGCAGGTTAAAGGAAGGGATTTTCGACACGAAAAGACCAAGAAGAAACGTGGATCGTACCGAGGTGGAGTTATTGATCTGCAATCTCACTCAGTAAAGTTCAACTACGCTGATGATGAATAA

Protein sequence

MSADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHKHLKKCSQAIRKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDTDSVLIDCAKNSKGTEPSVGAIVHEEVGTKSKDKKKKNKDNLESVATISEDATVSKDYQAVDSIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKLVETDVNDLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNYADDE

Homology

[Close]

BLAST of Sed0024384.1 vs. NCBI nr
Match: XP_022135461.1 (nucleolar and coiled-body phosphoprotein 1 isoform X3 [Momordica charantia])

HSP 1 Score: 458.4 bits (1178), Expect = 6.3e-125
Identity = 283/425 (66.59%), Postives = 317/425 (74.59%), Query Frame = 0


Query: 3   ADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHK 62
           +D+  SL+ E   LLL AVA +L+RNGFSK+ K+F  + ++  KD SKD L+SLEEMCH+
Sbjct: 39  SDQGVSLEPEQRTLLLHAVAFYLERNGFSKSLKKFRSEAQIE-KDSSKDFLISLEEMCHE 98

Query: 63  HLKKCSQAIRKPD-EEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDT----- 122
           +LKKCSQAI   + +E VKEV DD V EAQEEP KKSK+ KKTKK  VPETH DT     
Sbjct: 99  YLKKCSQAITTQNKQETVKEVADDNVPEAQEEPKKKSKN-KKTKKDMVPETHADTVEKEK 158

Query: 123 -DSVLIDCAKNSKGTEPSVGAIVHEEVGTKSKD-KKKKNKDNLESVATISEDATVSKDYQ 182
            +SV ++  KNSKGTEP  G  VHEE G KSKD KKKKNK+ LES ATIS+D  VS D Q
Sbjct: 159 SESVHVESLKNSKGTEPPEGTTVHEEAGKKSKDKKKKKNKEKLESCATISDD-NVSGDSQ 218

Query: 183 AVDSIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKE---------TENKNDGTKALHE 242
           AVDSI  NGN  TLEEKV KSK KKKKDG+ L DE            T NKN G K +HE
Sbjct: 219 AVDSITWNGNAITLEEKVAKSKAKKKKDGQHLCDENSNQLMTENLEGTVNKNGGIKTVHE 278

Query: 243 DEHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKL------------------VETDVN 302
           DE++++SKKRKRL SED DSHT DEK TED KRRKL                  VETDVN
Sbjct: 279 DENNDHSKKRKRLASEDHDSHTVDEKVTEDVKRRKLEGSKGCNNGVQSTKVNASVETDVN 338

Query: 303 DLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVTFANE 362
             SR TSNELSQQT E++EKTAE+TSTKKA+KK SNGS EPKTINAFQ VKVD VTFA+E
Sbjct: 339 AGSRGTSNELSQQTIENVEKTAERTSTKKAMKKHSNGSTEPKTINAFQRVKVDAVTFADE 398

Query: 363 KLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFN 393
           KLADNSYWAKGGAE GYGAKAQEVLGQVKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFN
Sbjct: 399 KLADNSYWAKGGAETGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFN 458

[Close]

BLAST of Sed0024384.1 vs. NCBI nr
Match: XP_022135459.1 (nucleolar and coiled-body phosphoprotein 1 isoform X1 [Momordica charantia])

HSP 1 Score: 457.2 bits (1175), Expect = 1.4e-124
Identity = 283/428 (66.12%), Postives = 318/428 (74.30%), Query Frame = 0


Query: 3   ADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHK 62
           +D+  SL+ E   LLL AVA +L+RNGFSK+ K+F  + ++  KD SKD L+SLEEMCH+
Sbjct: 39  SDQGVSLEPEQRTLLLHAVAFYLERNGFSKSLKKFRSEAQIE-KDSSKDFLISLEEMCHE 98

Query: 63  HLKKCSQAI----RKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDT-- 122
           +LKKCSQAI    ++ + E VKEV DD V EAQEEP KKSK+ KKTKK  VPETH DT  
Sbjct: 99  YLKKCSQAITTQNKQVNVETVKEVADDNVPEAQEEPKKKSKN-KKTKKDMVPETHADTVE 158

Query: 123 ----DSVLIDCAKNSKGTEPSVGAIVHEEVGTKSKD-KKKKNKDNLESVATISEDATVSK 182
               +SV ++  KNSKGTEP  G  VHEE G KSKD KKKKNK+ LES ATIS+D  VS 
Sbjct: 159 KEKSESVHVESLKNSKGTEPPEGTTVHEEAGKKSKDKKKKKNKEKLESCATISDD-NVSG 218

Query: 183 DYQAVDSIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKE---------TENKNDGTKA 242
           D QAVDSI  NGN  TLEEKV KSK KKKKDG+ L DE            T NKN G K 
Sbjct: 219 DSQAVDSITWNGNAITLEEKVAKSKAKKKKDGQHLCDENSNQLMTENLEGTVNKNGGIKT 278

Query: 243 LHEDEHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKL------------------VET 302
           +HEDE++++SKKRKRL SED DSHT DEK TED KRRKL                  VET
Sbjct: 279 VHEDENNDHSKKRKRLASEDHDSHTVDEKVTEDVKRRKLEGSKGCNNGVQSTKVNASVET 338

Query: 303 DVNDLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVTF 362
           DVN  SR TSNELSQQT E++EKTAE+TSTKKA+KK SNGS EPKTINAFQ VKVD VTF
Sbjct: 339 DVNAGSRGTSNELSQQTIENVEKTAERTSTKKAMKKHSNGSTEPKTINAFQRVKVDAVTF 398

Query: 363 ANEKLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSV 393
           A+EKLADNSYWAKGGAE GYGAKAQEVLGQVKGR FRHEKTKKKRGSYRGGVIDLQSHSV
Sbjct: 399 ADEKLADNSYWAKGGAETGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSV 458

[Close]

BLAST of Sed0024384.1 vs. NCBI nr
Match: XP_023515602.1 (nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456.4 bits (1173), Expect = 2.4e-124
Identity = 277/398 (69.60%), Postives = 311/398 (78.14%), Query Frame = 0


Query: 3   ADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHK 62
           ADEA SL  E   LLL AVA FL+RNGFSKT K+F  + ++  KD SK+LLLSLEEMCHK
Sbjct: 40  ADEAASLHPEQRTLLLHAVAFFLERNGFSKTLKKFRSEAQIE-KDSSKELLLSLEEMCHK 99

Query: 63  HLKKCSQAI---RKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDTDSV 122
           H KK SQA+    KPDEE++ EV DDRV E QEEP KKSKDKKK KK AV +    ++S 
Sbjct: 100 HFKKGSQAVTPQNKPDEEMMTEVADDRVPEEQEEPAKKSKDKKKIKKNAVADKE-KSESA 159

Query: 123 LIDCAKNSKGTEPSVGAIVHEEVGTKSKD-KKKKNKDNLESVATISEDATVSKDYQAVDS 182
            ++  KNS GTEPS G  VHEE G KSKD KKKKNK+ +E+VATI +D TVS+D QAVDS
Sbjct: 160 HVESLKNSNGTEPSEGTTVHEEAGKKSKDKKKKKNKEKIEAVATIPDDVTVSRDSQAVDS 219

Query: 183 IELNGNIATLEEKVVKSKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDENSKKRKRL 242
             LNGN+ATL+EKVVKSK+KKKKDGR LSD    +   NDGTK LHE+EH++NSKKRKRL
Sbjct: 220 NGLNGNVATLDEKVVKSKSKKKKDGRHLSD--TNSNQLNDGTKMLHEEEHNDNSKKRKRL 279

Query: 243 VSEDRDSHTDDEKETEDAKRRKLV-ETDVNDLSRSTS---NELSQQTNEHIEKTAEKTST 302
            SED DSH  DEKETED KRRKL      ND   ST    NELSQ+T+  +EKTAEKTS+
Sbjct: 280 ASEDNDSHAVDEKETEDVKRRKLEGSKGCNDGVLSTKVDVNELSQETD--VEKTAEKTSS 339

Query: 303 KKALKKLSNGSAEPKTINAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQ 362
           KK  KK SNGS EPKTINAFQ VKVD VTFA+EKLADNSYWAKGGAE GYGAKAQEVLGQ
Sbjct: 340 KKPWKKSSNGSTEPKTINAFQRVKVDAVTFADEKLADNSYWAKGGAETGYGAKAQEVLGQ 399

Query: 363 VKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNYADDE 393
           VKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFNY+D++
Sbjct: 400 VKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFNYSDED 431

[Close]

BLAST of Sed0024384.1 vs. NCBI nr
Match: XP_022922037.1 (nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 456.1 bits (1172), Expect = 3.1e-124
Identity = 276/398 (69.35%), Postives = 309/398 (77.64%), Query Frame = 0


Query: 2   SADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCH 61
           SADEA SL  E   LLL AVA FL+ NGFSKT K+F  + ++  KD SK+LLLSLEEMCH
Sbjct: 39  SADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE-KDSSKELLLSLEEMCH 98

Query: 62  KHLKKCSQAI---RKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDTDS 121
           KH KK SQA+    KPDEE+V EV DDRV E QEEP KKSKDKKK KK AV +    ++ 
Sbjct: 99  KHFKKGSQAVTPQNKPDEEMVTEVTDDRVPEEQEEPAKKSKDKKKIKKNAVADKE-KSEP 158

Query: 122 VLIDCAKNSKGTEPSVGAIVHEEVGTKSKDKKKKNKDNLESVATISEDATVSKDYQAVDS 181
             ++  KNS GTEPS G  VHEE G KSKDKKKKNK+ +E+VATI +D TVS+D QAVDS
Sbjct: 159 AHVESLKNSNGTEPSEGTTVHEEAGKKSKDKKKKNKEKIEAVATIPDDVTVSRDSQAVDS 218

Query: 182 IELNGNIATLEEKVVKSKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDENSKKRKRL 241
             LNGN+ATL+EKVVKSK+KKKKDGR LSD    +   NDGTK L E+EH++NSKKRKRL
Sbjct: 219 NGLNGNVATLDEKVVKSKSKKKKDGRHLSD--TNSNQLNDGTKMLDEEEHNDNSKKRKRL 278

Query: 242 VSEDRDSHTDDEKETEDAKRRKLV-ETDVNDLSRSTS---NELSQQTNEHIEKTAEKTST 301
            SED DSH  DEKETED KRRKL      ND   ST    NELSQ+T+  +EKTAEKTS+
Sbjct: 279 ASEDNDSHAVDEKETEDVKRRKLEGSKGCNDGVLSTKVDVNELSQETD--VEKTAEKTSS 338

Query: 302 KKALKKLSNGSAEPKTINAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQ 361
           KK  KK SNGS EPKTINAFQ VKVD VTFA+EKLADNSYWAKGGAE GYGAKAQEVLGQ
Sbjct: 339 KKPWKKPSNGSTEPKTINAFQRVKVDAVTFADEKLADNSYWAKGGAETGYGAKAQEVLGQ 398

Query: 362 VKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNYADDE 393
           VKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFNY+D++
Sbjct: 399 VKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFNYSDED 430

[Close]

BLAST of Sed0024384.1 vs. NCBI nr
Match: XP_022135462.1 (nucleolar and coiled-body phosphoprotein 1 isoform X4 [Momordica charantia])

HSP 1 Score: 454.9 bits (1169), Expect = 7.0e-124
Identity = 279/424 (65.80%), Postives = 313/424 (73.82%), Query Frame = 0


Query: 3   ADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHK 62
           +D+  SL+ E   LLL AVA +L+RNGFSK+ K+F  + ++  KD SKD L+SLEEMCH+
Sbjct: 39  SDQGVSLEPEQRTLLLHAVAFYLERNGFSKSLKKFRSEAQIE-KDSSKDFLISLEEMCHE 98

Query: 63  HLKKCSQAIRKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDT------ 122
           +LKKC     +  +E VKEV DD V EAQEEP KKSK+ KKTKK  VPETH DT      
Sbjct: 99  YLKKCQAITTQNKQETVKEVADDNVPEAQEEPKKKSKN-KKTKKDMVPETHADTVEKEKS 158

Query: 123 DSVLIDCAKNSKGTEPSVGAIVHEEVGTKSKD-KKKKNKDNLESVATISEDATVSKDYQA 182
           +SV ++  KNSKGTEP  G  VHEE G KSKD KKKKNK+ LES ATIS+D  VS D QA
Sbjct: 159 ESVHVESLKNSKGTEPPEGTTVHEEAGKKSKDKKKKKNKEKLESCATISDD-NVSGDSQA 218

Query: 183 VDSIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKE---------TENKNDGTKALHED 242
           VDSI  NGN  TLEEKV KSK KKKKDG+ L DE            T NKN G K +HED
Sbjct: 219 VDSITWNGNAITLEEKVAKSKAKKKKDGQHLCDENSNQLMTENLEGTVNKNGGIKTVHED 278

Query: 243 EHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKL------------------VETDVND 302
           E++++SKKRKRL SED DSHT DEK TED KRRKL                  VETDVN 
Sbjct: 279 ENNDHSKKRKRLASEDHDSHTVDEKVTEDVKRRKLEGSKGCNNGVQSTKVNASVETDVNA 338

Query: 303 LSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVTFANEK 362
            SR TSNELSQQT E++EKTAE+TSTKKA+KK SNGS EPKTINAFQ VKVD VTFA+EK
Sbjct: 339 GSRGTSNELSQQTIENVEKTAERTSTKKAMKKHSNGSTEPKTINAFQRVKVDAVTFADEK 398

Query: 363 LADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNY 393
           LADNSYWAKGGAE GYGAKAQEVLGQVKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFNY
Sbjct: 399 LADNSYWAKGGAETGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFNY 458

[Close]

BLAST of Sed0024384.1 vs. ExPASy Swiss-Prot
Match: Q14978 (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens OX=9606 GN=NOLC1 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-07
Identity = 87/316 (27.53%), Postives = 145/316 (45.89%), Query Frame = 0


Query: 76  EEIVKEVVDDRVSEAQEEPTKKSKDKK---KTKKKAVPETHVDTDSVLI-DCAKNSKGTE 135
           ++++    D   SE +   +++ K KK    TK KA  +  +   +      +++S    
Sbjct: 414 QKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDS 473

Query: 136 PSVGAIVHEEVGTKSKDKKKKNKDNLESVATISEDATVSKDYQAVDSIELNGNIATLEEK 195
            S  +   EE  +KS  KKK  K        ++  A  SK   A      + N ++ ++ 
Sbjct: 474 DSSSSEEEEEKTSKSAVKKKPQK--------VAGGAAPSKPASAKKGKAESSNSSSSDDS 533

Query: 196 VVKSKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDENSKKRKRLVSEDRDSHTDDEK 255
             + + K K  G       +    K +GT AL      +N K  K           + E+
Sbjct: 534 SEEEEEKLKGKG-----SPRPQAPKANGTSALTA----QNGKAAK-----------NSEE 593

Query: 256 ETEDAKRRKLVETDVNDLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTI 315
           E E+ K+  +V +    L +   NE +++  E  +    K  T     K   G  E +  
Sbjct: 594 EEEEKKKAAVVVSKSGSLKKRKQNEAAKEA-ETPQAKKIKLQTPNTFPKRKKG--EKRAS 653

Query: 316 NAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGS 375
           + F+ V+ +++   + ++ADNS+ AK GA   +G +A +VL   KG+ FRHEKTKKKRGS
Sbjct: 654 SPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGS 697

Query: 376 YRGGVIDLQSHSVKFN 388
           YRGG I +Q +S+KF+
Sbjct: 714 YRGGSISVQVNSIKFD 697

[Close]

BLAST of Sed0024384.1 vs. ExPASy Swiss-Prot
Match: E9Q5C9 (Nucleolar and coiled-body phosphoprotein 1 OS=Mus musculus OX=10090 GN=Nolc1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.3e-07
Identity = 87/329 (26.44%), Postives = 140/329 (42.55%), Query Frame = 0


Query: 85  DRVSEAQEEPTKKSKDKKKTKKKAVPETHV--DTDSVLIDCAKNSKGTEPSVGAIVHEEV 144
           D  S   E P K     K  K    P+        +       N K       +   EE 
Sbjct: 376 DSDSSEDEAPAKPVSTTKSPKPAVTPKPSAAKAVTTPKQPAGSNQKPQSRKADSSSSEEE 435

Query: 145 GTKSKDKKKKNKDNLESVATISEDATVSKDY-QAV--DSIELNGNIATLEEKVVKSKTKK 204
            + S++++   K      A ++  A  +K   QA    S + + + +  EEK  K   KK
Sbjct: 436 SSSSEEEEASKKSATTPKAKVTAKAAPAKQAPQAAGDSSSDSDSSSSEEEEKTPKPPAKK 495

Query: 205 KKDGRDLS----DETKETENKNDGTKALHEDEHDENSKKRKR-----------------L 264
           K  G  +S     +  E ++ +  + +  ED  +E  KK+ +                 L
Sbjct: 496 KAAGGAVSTPAPGKKAEAKSSSSSSSSSSEDSSEEEKKKKPKATTPKIQASKANGTPASL 555

Query: 265 VSEDRDSHTDDEKETEDAKRRKLVETDVNDLSRSTSNELSQQTNEHIEKTAEKTSTKKAL 324
             +      ++E+E E  +++K   T      +   NE + +      K   K  T    
Sbjct: 556 NGKAAKESEEEEEEEETEEKKKAAGTKPGSGKKRKQNETADEATTPQAKKV-KLETPNTF 615

Query: 325 KKLSNGSAEPKTINAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQVKGR 384
            K   G  E +  + F+ V+ +++   + ++ADNS+ AK GA   +G +A +VL   KG+
Sbjct: 616 PKRKKG--ERRASSPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGK 675

Query: 385 DFRHEKTKKKRGSYRGGVIDLQSHSVKFN 388
            FRHEKTKKKRGSYRGG I +Q +SVKF+
Sbjct: 676 SFRHEKTKKKRGSYRGGSISVQVNSVKFD 700

[Close]

BLAST of Sed0024384.1 vs. ExPASy Swiss-Prot
Match: P41777 (Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus OX=10116 GN=Nolc1 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-05
Identity = 84/304 (27.63%), Postives = 133/304 (43.75%), Query Frame = 0


Query: 84  DDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDTDSVLIDCAKNSKGTEPSVGAIVHEEVG 143
           ++  S ++EE TKKS    K +  A     +           +S  +E S      EE  
Sbjct: 436 EEESSSSEEEATKKSVTTPKARVTAKAAPSLPAKQAPRAGGDSSSDSESSSS---EEEKK 495

Query: 144 TKSKDKKKKNKDNLESVATISEDATVSKDYQAVDSIELNGNIATLEEKVVKSKTKKKKDG 203
           T  K   KK      + A + +   V K      S   +   ++ EE   K K K K   
Sbjct: 496 TPPKPPAKKK----AAGAAVPKPTPVKKAAAESSSSSSSSEDSSEEE---KKKPKSKATP 555

Query: 204 RDLSDETKETENKNDGTKALHEDEHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKLVE 263
           +  + +        +G      +E +E++++ K+       S           K+RK  E
Sbjct: 556 KPQAGKANGVPASQNGKAGKESEEEEEDTEQNKKAAGTKPGS----------GKKRKHNE 615

Query: 264 TDVNDLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVT 323
           T  ++ +   S ++  QT     K       KK  K+ S         + F+ V+ +++ 
Sbjct: 616 T-ADEAATPQSKKVKLQTPNTFPK------RKKGEKRAS---------SPFRRVREEEIE 675

Query: 324 FANEKLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHS 383
             + ++ADNS+ AK GA   +G +A +VL   KG+ FRHEKTKKKRGSYRGG I +Q +S
Sbjct: 676 -VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNS 702

Query: 384 VKFN 388
           VKF+
Sbjct: 736 VKFD 702

[Close]

BLAST of Sed0024384.1 vs. ExPASy Swiss-Prot
Match: P32583 (Suppressor protein SRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SRP40 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 2.0e-04
Identity = 81/312 (25.96%), Postives = 130/312 (41.67%), Query Frame = 0


Query: 84  DDRVSEAQ-EEPTKK------SKDKKKTKK-KAVPETHVDTDSVLIDCAKNSKGTEPSVG 143
           D+  SE++ E+ TKK      ++D K+TKK K  PE+   ++S     + +S+    S  
Sbjct: 114 DESSSESESEDETKKRARESDNEDAKETKKAKTEPESSSSSESSSSGSSSSSESESGSES 173

Query: 144 AIVHEEVGTKSKDKKKKNK-DNLESVATISEDATVSKDYQAVDSIELNGNIATLEEKVVK 203
                   + S D +  ++ D+  S ++ S D++   D  + DS        + +     
Sbjct: 174 DSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDS--------SSDSDSSS 233

Query: 204 SKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDENSKKRKRLVSEDRDSHTDDEKETE 263
           S +    D    SD + ++++      +   D   + S       S D DS +D    +E
Sbjct: 234 SSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSD---SSDSDSDSDSGSSSE 293

Query: 264 DAKRRKLVETDVNDLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAF 323
                  +ET       S + E    +NE     +  +S  K          +      F
Sbjct: 294 -------LETKEATADESKAEETPASSNESTPSASSSSSANKLNIPAGTDEIKEGQRKHF 353

Query: 324 QSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRG 383
             V    + F   +L DN+Y    G    +G KA E LG+V+G+DF   K K KRGSYRG
Sbjct: 354 SRVDRSKINFEAWELTDNTYKGAAGT---WGEKANEKLGRVRGKDFTKNKNKMKRGSYRG 404

Query: 384 GVIDLQSHSVKF 387
           G I L+S S KF
Sbjct: 414 GSITLESGSYKF 404

[Close]

BLAST of Sed0024384.1 vs. ExPASy TrEMBL
Match: A0A6J1C0U0 (nucleolar and coiled-body phosphoprotein 1 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007414 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 3.1e-125
Identity = 283/425 (66.59%), Postives = 317/425 (74.59%), Query Frame = 0


Query: 3   ADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHK 62
           +D+  SL+ E   LLL AVA +L+RNGFSK+ K+F  + ++  KD SKD L+SLEEMCH+
Sbjct: 39  SDQGVSLEPEQRTLLLHAVAFYLERNGFSKSLKKFRSEAQIE-KDSSKDFLISLEEMCHE 98

Query: 63  HLKKCSQAIRKPD-EEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDT----- 122
           +LKKCSQAI   + +E VKEV DD V EAQEEP KKSK+ KKTKK  VPETH DT     
Sbjct: 99  YLKKCSQAITTQNKQETVKEVADDNVPEAQEEPKKKSKN-KKTKKDMVPETHADTVEKEK 158

Query: 123 -DSVLIDCAKNSKGTEPSVGAIVHEEVGTKSKD-KKKKNKDNLESVATISEDATVSKDYQ 182
            +SV ++  KNSKGTEP  G  VHEE G KSKD KKKKNK+ LES ATIS+D  VS D Q
Sbjct: 159 SESVHVESLKNSKGTEPPEGTTVHEEAGKKSKDKKKKKNKEKLESCATISDD-NVSGDSQ 218

Query: 183 AVDSIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKE---------TENKNDGTKALHE 242
           AVDSI  NGN  TLEEKV KSK KKKKDG+ L DE            T NKN G K +HE
Sbjct: 219 AVDSITWNGNAITLEEKVAKSKAKKKKDGQHLCDENSNQLMTENLEGTVNKNGGIKTVHE 278

Query: 243 DEHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKL------------------VETDVN 302
           DE++++SKKRKRL SED DSHT DEK TED KRRKL                  VETDVN
Sbjct: 279 DENNDHSKKRKRLASEDHDSHTVDEKVTEDVKRRKLEGSKGCNNGVQSTKVNASVETDVN 338

Query: 303 DLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVTFANE 362
             SR TSNELSQQT E++EKTAE+TSTKKA+KK SNGS EPKTINAFQ VKVD VTFA+E
Sbjct: 339 AGSRGTSNELSQQTIENVEKTAERTSTKKAMKKHSNGSTEPKTINAFQRVKVDAVTFADE 398

Query: 363 KLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFN 393
           KLADNSYWAKGGAE GYGAKAQEVLGQVKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFN
Sbjct: 399 KLADNSYWAKGGAETGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFN 458

[Close]

BLAST of Sed0024384.1 vs. ExPASy TrEMBL
Match: A0A6J1C1H7 (nucleolar and coiled-body phosphoprotein 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007414 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 6.8e-125
Identity = 283/428 (66.12%), Postives = 318/428 (74.30%), Query Frame = 0


Query: 3   ADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHK 62
           +D+  SL+ E   LLL AVA +L+RNGFSK+ K+F  + ++  KD SKD L+SLEEMCH+
Sbjct: 39  SDQGVSLEPEQRTLLLHAVAFYLERNGFSKSLKKFRSEAQIE-KDSSKDFLISLEEMCHE 98

Query: 63  HLKKCSQAI----RKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDT-- 122
           +LKKCSQAI    ++ + E VKEV DD V EAQEEP KKSK+ KKTKK  VPETH DT  
Sbjct: 99  YLKKCSQAITTQNKQVNVETVKEVADDNVPEAQEEPKKKSKN-KKTKKDMVPETHADTVE 158

Query: 123 ----DSVLIDCAKNSKGTEPSVGAIVHEEVGTKSKD-KKKKNKDNLESVATISEDATVSK 182
               +SV ++  KNSKGTEP  G  VHEE G KSKD KKKKNK+ LES ATIS+D  VS 
Sbjct: 159 KEKSESVHVESLKNSKGTEPPEGTTVHEEAGKKSKDKKKKKNKEKLESCATISDD-NVSG 218

Query: 183 DYQAVDSIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKE---------TENKNDGTKA 242
           D QAVDSI  NGN  TLEEKV KSK KKKKDG+ L DE            T NKN G K 
Sbjct: 219 DSQAVDSITWNGNAITLEEKVAKSKAKKKKDGQHLCDENSNQLMTENLEGTVNKNGGIKT 278

Query: 243 LHEDEHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKL------------------VET 302
           +HEDE++++SKKRKRL SED DSHT DEK TED KRRKL                  VET
Sbjct: 279 VHEDENNDHSKKRKRLASEDHDSHTVDEKVTEDVKRRKLEGSKGCNNGVQSTKVNASVET 338

Query: 303 DVNDLSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVTF 362
           DVN  SR TSNELSQQT E++EKTAE+TSTKKA+KK SNGS EPKTINAFQ VKVD VTF
Sbjct: 339 DVNAGSRGTSNELSQQTIENVEKTAERTSTKKAMKKHSNGSTEPKTINAFQRVKVDAVTF 398

Query: 363 ANEKLADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSV 393
           A+EKLADNSYWAKGGAE GYGAKAQEVLGQVKGR FRHEKTKKKRGSYRGGVIDLQSHSV
Sbjct: 399 ADEKLADNSYWAKGGAETGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSV 458

[Close]

BLAST of Sed0024384.1 vs. ExPASy TrEMBL
Match: A0A6J1E202 (nucleolar and coiled-body phosphoprotein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430107 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.5e-124
Identity = 276/398 (69.35%), Postives = 309/398 (77.64%), Query Frame = 0


Query: 2   SADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCH 61
           SADEA SL  E   LLL AVA FL+ NGFSKT K+F  + ++  KD SK+LLLSLEEMCH
Sbjct: 39  SADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE-KDSSKELLLSLEEMCH 98

Query: 62  KHLKKCSQAI---RKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDTDS 121
           KH KK SQA+    KPDEE+V EV DDRV E QEEP KKSKDKKK KK AV +    ++ 
Sbjct: 99  KHFKKGSQAVTPQNKPDEEMVTEVTDDRVPEEQEEPAKKSKDKKKIKKNAVADKE-KSEP 158

Query: 122 VLIDCAKNSKGTEPSVGAIVHEEVGTKSKDKKKKNKDNLESVATISEDATVSKDYQAVDS 181
             ++  KNS GTEPS G  VHEE G KSKDKKKKNK+ +E+VATI +D TVS+D QAVDS
Sbjct: 159 AHVESLKNSNGTEPSEGTTVHEEAGKKSKDKKKKNKEKIEAVATIPDDVTVSRDSQAVDS 218

Query: 182 IELNGNIATLEEKVVKSKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDENSKKRKRL 241
             LNGN+ATL+EKVVKSK+KKKKDGR LSD    +   NDGTK L E+EH++NSKKRKRL
Sbjct: 219 NGLNGNVATLDEKVVKSKSKKKKDGRHLSD--TNSNQLNDGTKMLDEEEHNDNSKKRKRL 278

Query: 242 VSEDRDSHTDDEKETEDAKRRKLV-ETDVNDLSRSTS---NELSQQTNEHIEKTAEKTST 301
            SED DSH  DEKETED KRRKL      ND   ST    NELSQ+T+  +EKTAEKTS+
Sbjct: 279 ASEDNDSHAVDEKETEDVKRRKLEGSKGCNDGVLSTKVDVNELSQETD--VEKTAEKTSS 338

Query: 302 KKALKKLSNGSAEPKTINAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQ 361
           KK  KK SNGS EPKTINAFQ VKVD VTFA+EKLADNSYWAKGGAE GYGAKAQEVLGQ
Sbjct: 339 KKPWKKPSNGSTEPKTINAFQRVKVDAVTFADEKLADNSYWAKGGAETGYGAKAQEVLGQ 398

Query: 362 VKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNYADDE 393
           VKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFNY+D++
Sbjct: 399 VKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFNYSDED 430

[Close]

BLAST of Sed0024384.1 vs. ExPASy TrEMBL
Match: A0A6J1C2R9 (nucleolar and coiled-body phosphoprotein 1 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007414 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 3.4e-124
Identity = 279/424 (65.80%), Postives = 313/424 (73.82%), Query Frame = 0


Query: 3   ADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHK 62
           +D+  SL+ E   LLL AVA +L+RNGFSK+ K+F  + ++  KD SKD L+SLEEMCH+
Sbjct: 39  SDQGVSLEPEQRTLLLHAVAFYLERNGFSKSLKKFRSEAQIE-KDSSKDFLISLEEMCHE 98

Query: 63  HLKKCSQAIRKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDT------ 122
           +LKKC     +  +E VKEV DD V EAQEEP KKSK+ KKTKK  VPETH DT      
Sbjct: 99  YLKKCQAITTQNKQETVKEVADDNVPEAQEEPKKKSKN-KKTKKDMVPETHADTVEKEKS 158

Query: 123 DSVLIDCAKNSKGTEPSVGAIVHEEVGTKSKD-KKKKNKDNLESVATISEDATVSKDYQA 182
           +SV ++  KNSKGTEP  G  VHEE G KSKD KKKKNK+ LES ATIS+D  VS D QA
Sbjct: 159 ESVHVESLKNSKGTEPPEGTTVHEEAGKKSKDKKKKKNKEKLESCATISDD-NVSGDSQA 218

Query: 183 VDSIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKE---------TENKNDGTKALHED 242
           VDSI  NGN  TLEEKV KSK KKKKDG+ L DE            T NKN G K +HED
Sbjct: 219 VDSITWNGNAITLEEKVAKSKAKKKKDGQHLCDENSNQLMTENLEGTVNKNGGIKTVHED 278

Query: 243 EHDENSKKRKRLVSEDRDSHTDDEKETEDAKRRKL------------------VETDVND 302
           E++++SKKRKRL SED DSHT DEK TED KRRKL                  VETDVN 
Sbjct: 279 ENNDHSKKRKRLASEDHDSHTVDEKVTEDVKRRKLEGSKGCNNGVQSTKVNASVETDVNA 338

Query: 303 LSRSTSNELSQQTNEHIEKTAEKTSTKKALKKLSNGSAEPKTINAFQSVKVDDVTFANEK 362
            SR TSNELSQQT E++EKTAE+TSTKKA+KK SNGS EPKTINAFQ VKVD VTFA+EK
Sbjct: 339 GSRGTSNELSQQTIENVEKTAERTSTKKAMKKHSNGSTEPKTINAFQRVKVDAVTFADEK 398

Query: 363 LADNSYWAKGGAEIGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNY 393
           LADNSYWAKGGAE GYGAKAQEVLGQVKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFNY
Sbjct: 399 LADNSYWAKGGAETGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFNY 458

[Close]

BLAST of Sed0024384.1 vs. ExPASy TrEMBL
Match: A0A6J1E312 (nucleolar and coiled-body phosphoprotein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430107 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 3.7e-123
Identity = 276/399 (69.17%), Postives = 309/399 (77.44%), Query Frame = 0


Query: 2   SADEATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCH 61
           SADEA SL  E   LLL AVA FL+ NGFSKT K+F  + ++  KD SK+LLLSLEEMCH
Sbjct: 39  SADEAASLHPEQRTLLLHAVAFFLEHNGFSKTLKKFRSEAQIE-KDSSKELLLSLEEMCH 98

Query: 62  KHLKKCSQAI---RKP-DEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETHVDTD 121
           KH KK SQA+    KP DEE+V EV DDRV E QEEP KKSKDKKK KK AV +    ++
Sbjct: 99  KHFKKGSQAVTPQNKPVDEEMVTEVTDDRVPEEQEEPAKKSKDKKKIKKNAVADKE-KSE 158

Query: 122 SVLIDCAKNSKGTEPSVGAIVHEEVGTKSKDKKKKNKDNLESVATISEDATVSKDYQAVD 181
              ++  KNS GTEPS G  VHEE G KSKDKKKKNK+ +E+VATI +D TVS+D QAVD
Sbjct: 159 PAHVESLKNSNGTEPSEGTTVHEEAGKKSKDKKKKNKEKIEAVATIPDDVTVSRDSQAVD 218

Query: 182 SIELNGNIATLEEKVVKSKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDENSKKRKR 241
           S  LNGN+ATL+EKVVKSK+KKKKDGR LSD    +   NDGTK L E+EH++NSKKRKR
Sbjct: 219 SNGLNGNVATLDEKVVKSKSKKKKDGRHLSD--TNSNQLNDGTKMLDEEEHNDNSKKRKR 278

Query: 242 LVSEDRDSHTDDEKETEDAKRRKLV-ETDVNDLSRSTS---NELSQQTNEHIEKTAEKTS 301
           L SED DSH  DEKETED KRRKL      ND   ST    NELSQ+T+  +EKTAEKTS
Sbjct: 279 LASEDNDSHAVDEKETEDVKRRKLEGSKGCNDGVLSTKVDVNELSQETD--VEKTAEKTS 338

Query: 302 TKKALKKLSNGSAEPKTINAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLG 361
           +KK  KK SNGS EPKTINAFQ VKVD VTFA+EKLADNSYWAKGGAE GYGAKAQEVLG
Sbjct: 339 SKKPWKKPSNGSTEPKTINAFQRVKVDAVTFADEKLADNSYWAKGGAETGYGAKAQEVLG 398

Query: 362 QVKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNYADDE 393
           QVKGR FRHEKTKKKRGSYRGGVIDLQSHSVKFNY+D++
Sbjct: 399 QVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFNYSDED 431

[Close]

BLAST of Sed0024384.1 vs. TAIR 10
Match: AT5G57120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). )

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-35
Identity = 149/396 (37.63%), Postives = 203/396 (51.26%), Query Frame = 0


Query: 5   EATSLDLEPTALLLRAVALFLQRNGFSKTQKRFVPKRRLRFKDFSKDLLLSLEEMCHKHL 64
           + ++L+ E  ALLLR+VA +L+R GFSK  K+ + +  +  K+ +   L  LEE+  + L
Sbjct: 6   KTSALESEQKALLLRSVAQYLERCGFSKCFKKLLSEAEIEKKELNTS-LPDLEEIFSEFL 65

Query: 65  KKCSQAIRKPDEEIVKEVVDDRVSEAQEEPTKKSKDKKKTKKKAVPETH----VDTDSVL 124
            K      +  E       +  V EA E   KK K KKK K+  V  T      +TD+V+
Sbjct: 66  NK------RDHEAAANGNTEANVVEAVEN-VKKDKKKKKNKETKVEVTEEEKVKETDAVI 125

Query: 125 IDCAKNSKGTEPSVGAIVHEEVGTKSKDKKKKNKDNLESVATISEDATVSKDYQAVDSIE 184
            D                    G K K KKK+ K  +                       
Sbjct: 126 ED--------------------GVKEKKKKKETKVKV----------------------- 185

Query: 185 LNGNIATLEEKVVKSKTKKKKDGRDLSDETKETENKNDGTKALHEDEHDEN-SKKRKRLV 244
                 T EEKV       K+    + D  KE + K   +K++  D+  E  SKKRKR  
Sbjct: 186 ------TEEEKV-------KETDAVIEDGVKEKKKKKSKSKSVEADDDKEKVSKKRKR-- 245

Query: 245 SEDRDSHTDDEKETEDAKRRKLVETDV-ND--LSRSTSNELSQQTNEHIEKTAEKTSTKK 304
           SE  ++  + E + E++KRRK  E  V ND  +  +   E   + N + EK+  K++ +K
Sbjct: 246 SEPEETKEETEDDDEESKRRKKEENVVENDEGVQETPVKETETKENGNAEKSETKSTNQK 305

Query: 305 ALKKLSNGSAEPKTINAFQSVKVDDVTFANEKLADNSYWAKGGAEIGYGAKAQEVLGQVK 364
           + K LSN S EPK    FQ V VD++ +       NSY++KGGAEIGYG KAQEVLGQV+
Sbjct: 306 SGKGLSN-SKEPK--KPFQRVNVDEIVYTEN---SNSYYSKGGAEIGYGLKAQEVLGQVR 329

Query: 365 GRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNYADDE 393
           GRDFRHEKTKKKRGSYRGG+ID +SHS KFN +DDE
Sbjct: 366 GRDFRHEKTKKKRGSYRGGLIDQESHSTKFNNSDDE 329

The following BLAST results are available for this feature:

BLAST of Sed0024384.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135461.1	6.3e-125	66.59	nucleolar and coiled-body phosphoprotein 1 isoform X3 [Momordica charantia]	[more]
XP_022135459.1	1.4e-124	66.12	nucleolar and coiled-body phosphoprotein 1 isoform X1 [Momordica charantia]	[more]
XP_023515602.1	2.4e-124	69.60	nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_022922037.1	3.1e-124	69.35	nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022135462.1	7.0e-124	65.80	nucleolar and coiled-body phosphoprotein 1 isoform X4 [Momordica charantia]	[more]

BLAST of Sed0024384.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14978	1.5e-07	27.53	Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens OX=9606 GN=NOLC1 PE=1...	[more]
E9Q5C9	4.3e-07	26.44	Nucleolar and coiled-body phosphoprotein 1 OS=Mus musculus OX=10090 GN=Nolc1 PE=...	[more]
P41777	1.4e-05	27.63	Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus OX=10116 GN=Nolc...	[more]
P32583	2.0e-04	25.96	Suppressor protein SRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	[more]

BLAST of Sed0024384.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0U0	3.1e-125	66.59	nucleolar and coiled-body phosphoprotein 1 isoform X3 OS=Momordica charantia OX=...	[more]
A0A6J1C1H7	6.8e-125	66.12	nucleolar and coiled-body phosphoprotein 1 isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1E202	1.5e-124	69.35	nucleolar and coiled-body phosphoprotein 1-like isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1C2R9	3.4e-124	65.80	nucleolar and coiled-body phosphoprotein 1 isoform X4 OS=Momordica charantia OX=...	[more]
A0A6J1E312	3.7e-123	69.17	nucleolar and coiled-body phosphoprotein 1-like isoform X1 OS=Cucurbita moschata...	[more]

BLAST of Sed0024384.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57120.1	2.9e-35	37.63	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007718	Srp40, C-terminal	PFAM	PF05022	SRP40_C	coord: 314..386 e-value: 3.4E-25 score: 88.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..168
None	No IPR available	PANTHER	PTHR23216	NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1	coord: 19..392
None	No IPR available	PANTHER	PTHR23216:SF2	LIS1 HOMOLOGY MOTIF, SRP40-RELATED	coord: 19..392

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0024384	Sed0024384	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024384.1-exon	Sed0024384.1-exon-LG12:32239275..32239409	exon
Sed0024384.1-exon	Sed0024384.1-exon-LG12:32239913..32239977	exon
Sed0024384.1-exon	Sed0024384.1-exon-LG12:32240687..32240709	exon
Sed0024384.1-exon	Sed0024384.1-exon-LG12:32241142..32241839	exon
Sed0024384.1-exon	Sed0024384.1-exon-LG12:32243210..32243299	exon
Sed0024384.1-exon	Sed0024384.1-exon-LG12:32243399..32243460	exon
Sed0024384.1-exon	Sed0024384.1-exon-LG12:32244592..32244697	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024384.1-cds	Sed0024384.1-cds-LG12:32239275..32239409	CDS
Sed0024384.1-cds	Sed0024384.1-cds-LG12:32239913..32239977	CDS
Sed0024384.1-cds	Sed0024384.1-cds-LG12:32240687..32240709	CDS
Sed0024384.1-cds	Sed0024384.1-cds-LG12:32241142..32241839	CDS
Sed0024384.1-cds	Sed0024384.1-cds-LG12:32243210..32243299	CDS
Sed0024384.1-cds	Sed0024384.1-cds-LG12:32243399..32243460	CDS
Sed0024384.1-cds	Sed0024384.1-cds-LG12:32244592..32244697	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0024384.1	Sed0024384.1-protein	polypeptide