Sed0024077.1 (mRNA) Chayote v1

Overview


Name	Sed0024077.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	31 kDa ribonucleoprotein, chloroplastic
Location	LG13: 26142136 .. 26144996 (-)
Sequence length	1261
RNA-Seq Expression	Sed0024077.1
Synteny	Sed0024077.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATATACCACCAAAAACGTCGACGTTTTGGCATGTTCGGAGCTTCTTATCCAAATCCATGGCGTAGAGAGCTGAAGAGAGCGCGGTGAATATCTCATCCCAGCAATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCTCATTCATCCGCTCCAAACAGCACCGTCCCATCTTCCTCGCCCATCTCTCATGTCCGCAACATCAGTCTCATTCCGTCAATCTCTGTCTTGTTTCTACTTCCCTCGCCCACAATCCTCCGATTTCGATTCAACCTAAAAGAAGCGGCAGGTGCGGGTTGATTTTCCATCTCGCCGCAACCTCCCAAGACGAAGCCCTAGCGAGCGACACTCAGGAGTTTTCCCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGGATTCTACGCCCGAGGATATTCGTTCTCTCTTCCAGAAATATGGCACTGTTCTTGATGTCGAGGTATGCCCTTCTTTATTTCTCTCAAAATAATGTTCAAAGTTTCTTCTATTTTGATTTTGTATAGACTTCTAAAAACAAGTTTAAATTTAGCACTTTGAAGTTGATTCAACTATGTTCATCAAGAAATATGTGGATATATTTCTAAAATTAATTTATTTTGAAAGTTTAGGACTAATGTCGACCATTAAAAAGTTTTGGGACTAAAATGAAACTAATAAGTTCAAGAATCAAAATGGAATAAATTTCAAAGTTTAGGCCGGTTTGATAACCATTTGGTTTTTTGTTTTTGATTTTTAAAATCTAAGTCTACAACTACTATCTTATCCTAGGTTTTTTCTTAATTAGATATCTACCTTTCACCTATATTTGTAGAAATCAAACCAGAATTTGGAAACAAAAGAATGTAGCTTCCAAAAGTTTTTTTTAAAAAAGTTGGTTAGTATTCACCTACTTTCTTAAGGAAAGATAAATAGATTGTAAGAATTGGGGAACACATGGTAGGAAATTTAAGTGAAAATAGGTTTAAATTTCAAAAACCAAAAACAAAAAACCATTTCAAATGGTTATCAAACGGGACCTCAGGGATTCAAATTGGACTTTTGAAAGTTGAAGAACAAAATAAAATAAAGTTAAAAGCGGATCAAAATGATATTTTAACCAAGAATGTTCCTCTTGCTATTTCTGTTTTAACGGTTTTGGTTTATTCGCTATTGATGATCGGTCCTCTCTTTCCTTTCAGCTTTCAATGTATAACAAGATTAGAAACAGGGGCTTGGCGTTTGTAACGATGGGATCGCCTGAGGAGGCTCTTTCAGCACTTAATGATCTCGAATCGTATGTAAGCAATTAGTATCTTCACTATAATACTTTATGTTTAGCTTATAATGTTCTGTTTTTTAATTGAATTTGAGGTTTAAAGCAATGCTTACCCTTCATCATAAGAGGCTAGTCGTGTTAGCAATTCAATGCGTTTGGTTTTAGCAATAGTTTGGTTTGCTCGTGTGATGGAAAAACAGACGAAGTGGAAAAACTAAGCGTAGAGTTTAACCTTGTAGTTAAGAGTGCCTGGAAAAAGTAAGAGGTGATGAGTTTTGGCAGCAATTTTCCTAGGAATTAACTTCCTACCGGTTATAGTAGAGTTAACTGGTTGTTTTAAGCTGGTCTGGACATGAATGGATATAAAATAAACGAACTGTAGAATTTTATCCTGCTTTAATGTGTTGCAGTTGACAGTTGTTTCACTCTTGCTACTTTTTGAATATATATTATTACAAGGGAACCAGTTATTGACTAAAAATTTTCATTGTTACTTGGGGTTGGAGCATTTTGAACTTTTGTTGGGTTTATTTGATGAAACAGTTCACTTAAACGCAGGAATATGAGGGTCGTATTCTAAGGCTCAATTATGCTAAGGTTAAAAAGGAGAAACCTGCCCCTATTGTGAAACCAAAACCGGTTACTTTTAATTTGTTTGTGGCAAACTTATCATTTGAAGCCAGAGGAAAGGACCTCAAGGAGTTCTTTGATTCAGGCAGTGGTAATGTAGTTTCTGCACAAATTGTTTTCAACGAGAATCCAAGAAGGCCTTCTGGGTATGGTTTTGTTGCCTTCAAAAGCAAGAAGGATGCTGAAGCAGCCATTTCTGAGTTCCAAGGGAAGGTAATCTCAATATTGCTATAACTTATATCTTTAATGAATACCAATAGAATCATTAAATGTAACCATCATCGCATAGGTTAGTTTAATGGTCAAATAAAGGATTGCTAAATCATAAAGTGCTTAAATGTCACAAATTTAATCCATGGTGTTCATCTACATAGGAATTAGTTTCCTAAGGCTACAAGATACATTGACAACCAAATATAAACTGGCTGAGAATAGTCTAGGTGTGGATAAATTGATCTGGACACTCATGCATTTACAAAAGAAAATTAGTAAATGTGAATATCAGCATTCTTATGGTACTTTATCTGTTGAAGTTCAGATTTTCATGGGGAGAGCACTTCGTGTTGCACGTAGTAAACAGTTTGCGAAAATTCCTGACGAGAAATCTCAGTCTGAAGTTACAGATGGTGTGGAGGAGCTAGCTACAGCTAATGCTGGTGCTGAAGTTTAAAATTCAGAATCATCTCAGTGGATTAACGAAGGAGGTTGTCATCAACCTTTCTTTCTTTTTGTTTTCCTTTTTCTTCTCTTCTTCTTTCCTTTAGTTTTGAAGTAAATTATTCAATTGAGAAACACTTTAGTTTTCTTTCTCTTACCCATAAATCTTCGACCTCTTGTGTTTAAAGGATTCAAAGTTGGATTCCCCAACATAAGCGCACAGTACTGAAAATCCATATGGACTAACGAATGTATACTAGACCGTTTATTAGCGTCCTCGTTTGTTCTTTTGTC

mRNA sequence

ATGGAATATATACCACCAAAAACGTCGACGTTTTGGCATGTTCGGAGCTTCTTATCCAAATCCATGGCGTAGAGAGCTGAAGAGAGCGCGGTGAATATCTCATCCCAGCAATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCTCATTCATCCGCTCCAAACAGCACCGTCCCATCTTCCTCGCCCATCTCTCATGTCCGCAACATCAGTCTCATTCCGTCAATCTCTGTCTTGTTTCTACTTCCCTCGCCCACAATCCTCCGATTTCGATTCAACCTAAAAGAAGCGGCAGGTGCGGGTTGATTTTCCATCTCGCCGCAACCTCCCAAGACGAAGCCCTAGCGAGCGACACTCAGGAGTTTTCCCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGGATTCTACGCCCGAGGATATTCGTTCTCTCTTCCAGAAATATGGCACTGTTCTTGATGTCGAGCTTTCAATGTATAACAAGATTAGAAACAGGGGCTTGGCGTTTGTAACGATGGGATCGCCTGAGGAGGCTCTTTCAGCACTTAATGATCTCGAATCGTATGAATATGAGGGTCGTATTCTAAGGCTCAATTATGCTAAGGTTAAAAAGGAGAAACCTGCCCCTATTGTGAAACCAAAACCGGTTACTTTTAATTTGTTTGTGGCAAACTTATCATTTGAAGCCAGAGGAAAGGACCTCAAGGAGTTCTTTGATTCAGGCAGTGGTAATGTAGTTTCTGCACAAATTGTTTTCAACGAGAATCCAAGAAGGCCTTCTGGGTATGGTTTTGTTGCCTTCAAAAGCAAGAAGGATGCTGAAGCAGCCATTTCTGAGTTCCAAGGGAAGATTTTCATGGGGAGAGCACTTCGTGTTGCACGTAGTAAACAGTTTGCGAAAATTCCTGACGAGAAATCTCAGTCTGAAGTTACAGATGGTGTGGAGGAGCTAGCTACAGCTAATGCTGGTGCTGAAGTTTAAAATTCAGAATCATCTCAGTGGATTAACGAAGGAGGTTGTCATCAACCTTTCTTTCTTTTTGTTTTCCTTTTTCTTCTCTTCTTCTTTCCTTTAGTTTTGAAGTAAATTATTCAATTGAGAAACACTTTAGTTTTCTTTCTCTTACCCATAAATCTTCGACCTCTTGTGTTTAAAGGATTCAAAGTTGGATTCCCCAACATAAGCGCACAGTACTGAAAATCCATATGGACTAACGAATGTATACTAGACCGTTTATTAGCGTCCTCGTTTGTTCTTTTGTC

Coding sequence (CDS)

ATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCTCATTCATCCGCTCCAAACAGCACCGTCCCATCTTCCTCGCCCATCTCTCATGTCCGCAACATCAGTCTCATTCCGTCAATCTCTGTCTTGTTTCTACTTCCCTCGCCCACAATCCTCCGATTTCGATTCAACCTAAAAGAAGCGGCAGGTGCGGGTTGATTTTCCATCTCGCCGCAACCTCCCAAGACGAAGCCCTAGCGAGCGACACTCAGGAGTTTTCCCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGGATTCTACGCCCGAGGATATTCGTTCTCTCTTCCAGAAATATGGCACTGTTCTTGATGTCGAGCTTTCAATGTATAACAAGATTAGAAACAGGGGCTTGGCGTTTGTAACGATGGGATCGCCTGAGGAGGCTCTTTCAGCACTTAATGATCTCGAATCGTATGAATATGAGGGTCGTATTCTAAGGCTCAATTATGCTAAGGTTAAAAAGGAGAAACCTGCCCCTATTGTGAAACCAAAACCGGTTACTTTTAATTTGTTTGTGGCAAACTTATCATTTGAAGCCAGAGGAAAGGACCTCAAGGAGTTCTTTGATTCAGGCAGTGGTAATGTAGTTTCTGCACAAATTGTTTTCAACGAGAATCCAAGAAGGCCTTCTGGGTATGGTTTTGTTGCCTTCAAAAGCAAGAAGGATGCTGAAGCAGCCATTTCTGAGTTCCAAGGGAAGATTTTCATGGGGAGAGCACTTCGTGTTGCACGTAGTAAACAGTTTGCGAAAATTCCTGACGAGAAATCTCAGTCTGAAGTTACAGATGGTGTGGAGGAGCTAGCTACAGCTAATGCTGGTGCTGAAGTTTAA

Protein sequence

MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVNLCLVSTSLAHNPPISIQPKRSGRCGLIFHLAATSQDEALASDTQEFSRTRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVKKEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIPDEKSQSEVTDGVEELATANAGAEV

Homology

[Close]

BLAST of Sed0024077.1 vs. NCBI nr
Match: XP_022940500.1 (RNA-binding protein CP33, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 425.2 bits (1092), Expect = 4.4e-115
Identity = 225/303 (74.26%), Postives = 257/303 (84.82%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MALVRLPCSSSS+F+RSKQ  PIFLA LSC Q+ S S+N             L+STS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA---SDTQEFSRTRLLAQNVPWDSTPEDIRS 120
           NP I  +  +S R  LIFH A+TSQD+A+A   SDT+EFSRTRLLAQNVPW+STPEDIRS
Sbjct: 61  NPFIFTEGNKSRR--LIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRS 120

Query: 121 LFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVK 180
           LF+K+GTVLDVELSMYNKIRNRGLAFVTM SPEEAL+ALN+LESYE+EGR L+LNYAK+K
Sbjct: 121 LFEKFGTVLDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLK 180

Query: 181 KEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           KEKP+P VKPKPVTFNLFVANLSFEAR KDL+EFFDSGSGN+VSAQI+F+ENPRR SGYG
Sbjct: 181 KEKPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIPDEKSQSEVTDGVEELATANAG 290
           FVAFK+K+DAEAA+SEFQGKIFMGRALRVARSKQF K+P+EKSQSEVT   + +  +NA 
Sbjct: 241 FVAFKTKRDAEAALSEFQGKIFMGRALRVARSKQFVKLPEEKSQSEVT-STDGMVLSNAA 300

[Close]

BLAST of Sed0024077.1 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 422.9 bits (1086), Expect = 2.2e-114
Identity = 230/306 (75.16%), Postives = 258/306 (84.31%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MALVRLPCSSSSSF+RSKQ   IFLA LSCPQ+ S+ +N             L+STS+ H
Sbjct: 1   MALVRLPCSSSSSFLRSKQQHLIFLAPLSCPQNPSYPINGDFNLSISRSSPSLLSTSIGH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA---SDTQEFSRTRLLAQNVPWDSTPEDIRS 120
           NP ISI+ KR+ +   +F  A+TSQDEA+A   SD++EFS+TRLLAQNVPW STPEDIRS
Sbjct: 61  NPLISIRGKRTSK--FVFQFASTSQDEAVASSPSDSEEFSQTRLLAQNVPWSSTPEDIRS 120

Query: 121 LFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVK 180
           LF+KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL+ALN+LESYE+EGR LRLNYAK+K
Sbjct: 121 LFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLK 180

Query: 181 KEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           KEKP+P VKPKPVTFNLFVANL FEAR KDL+EFFDSGSGNVVSAQI+F+ENPRR SGYG
Sbjct: 181 KEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIP-DEKSQSE--VTDGVEELATA 290
           FVAFK+KKDAEAAISEFQGKIFMGR+LRVARSKQF K+P +EKSQSE   TD VE    A
Sbjct: 241 FVAFKTKKDAEAAISEFQGKIFMGRSLRVARSKQFVKLPSEEKSQSEDASTDDVE---LA 300

[Close]

BLAST of Sed0024077.1 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK31295.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 421.4 bits (1082), Expect = 6.3e-114
Identity = 229/306 (74.84%), Postives = 255/306 (83.33%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MA VRLPCSSSSS +RSKQH  IFLA LSC Q+ S+ +N             L+STS+ H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA---SDTQEFSRTRLLAQNVPWDSTPEDIRS 120
           NP ISI  KR+ +   +F  A+TSQDEA++   SD +EFSRTRLLAQNVPWDSTPEDIRS
Sbjct: 61  NPLISIMAKRTSK--FVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRS 120

Query: 121 LFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVK 180
           LF+KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL+ALN+LESYE+EGR LRLNYAK+K
Sbjct: 121 LFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLK 180

Query: 181 KEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           KEKP+P VKPKPVTFNLFVANL FEAR KDL+EFFDSGSGNVVSAQI+F+ENPRR SGYG
Sbjct: 181 KEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIP-DEKSQSE--VTDGVEELATA 290
           FVAFK+KKDAEAAISEFQGK FMGR+LRVARSKQF K+P +EKSQSE   TDGVE    A
Sbjct: 241 FVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVE---LA 300

[Close]

BLAST of Sed0024077.1 vs. NCBI nr
Match: KAG6608265.1 (RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421.0 bits (1081), Expect = 8.2e-114
Identity = 221/295 (74.92%), Postives = 254/295 (86.10%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MALVRLPCSSSS+F+RSKQ  PIFLA LSC Q+ S S+N             L+STS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA---SDTQEFSRTRLLAQNVPWDSTPEDIRS 120
           NP I  +  +S R  LIFH A+TSQD+A+A   SDT+EFSRTRLLAQNVPW+STPEDIRS
Sbjct: 61  NPFIFTKGNKSRR--LIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRS 120

Query: 121 LFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVK 180
           LF+K+GTV+DVELSMYNKIRNRGLAFVTM SPEEAL+ALN+LESYE+EGR L+LNYAK+K
Sbjct: 121 LFEKFGTVMDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLK 180

Query: 181 KEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           KEKP+P VKPKPVTFNLFVANLSFEAR KDL+EFFDSGSGN+VSAQI+F+ENPRR SGYG
Sbjct: 181 KEKPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIPDEKSQSEV--TDGVEE 280
           FVAFK+K+DAEAA+SEFQGKIFMGRALRVARSKQF K+P+EKSQSEV  TDG+++
Sbjct: 241 FVAFKTKRDAEAALSEFQGKIFMGRALRVARSKQFVKLPEEKSQSEVTSTDGMDK 293

[Close]

BLAST of Sed0024077.1 vs. NCBI nr
Match: XP_004136268.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetical protein Csa_002107 [Cucumis sativus])

HSP 1 Score: 418.7 bits (1075), Expect = 4.1e-113
Identity = 227/305 (74.43%), Postives = 255/305 (83.61%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MA VRLPCSSSSS +RSK H  IFLA LSC Q+ S+ +N             L+STS++H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA--SDTQEFSRTRLLAQNVPWDSTPEDIRSL 120
           +P ISI+ KR+     +F  A+TSQDEA++  SDT+EFS+TRLLAQNVPWDSTPEDIRSL
Sbjct: 61  SPLISIRAKRTST--FVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSL 120

Query: 121 FQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVKK 180
           F+KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL+ALN+LESYE+EGR LRLNYAK+KK
Sbjct: 121 FEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKK 180

Query: 181 EKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGF 240
           EKP+P VKPKPVTFNLFVANL F+AR KDLKEFFDSGSGNVVSAQI+FNENPRR SGYGF
Sbjct: 181 EKPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGF 240

Query: 241 VAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIP-DEKSQSE--VTDGVEELATAN 290
           VAFK+KKDAEAAISEFQGK FMGR+LRVARSKQF K+P +EK QSE   TDGVE    AN
Sbjct: 241 VAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVE---LAN 300

[Close]

BLAST of Sed0024077.1 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 59/188 (31.38%), Postives = 101/188 (53.72%), Query Frame = 0


Query: 79  ASDTQEFSR----TRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNK--IRNRGLAF 138
           A +T+E+       +L   N+P+D   E +  LFQ+ G V+++   +YN+   R+RG  F
Sbjct: 84  AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIYNRETDRSRGFGF 143

Query: 139 VTMGSPEEALSALNDLESYEYEGRILRLNYAKVKKEKPAPIVKPKPVTFNLFVANLSFEA 198
           VTM + EEA  A+     Y+  GR+L +N A  +  +P    +    T+ ++V N+ ++ 
Sbjct: 144 VTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDI 203

Query: 199 RGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFMGRA 258
               L++ F S  G VVSA++VF+    R  G+GFV   S+ +   AI+   G+   GR 
Sbjct: 204 DDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 263

Query: 259 LRVARSKQ 261
           +RV  +++
Sbjct: 264 IRVNAAEE 269

[Close]

BLAST of Sed0024077.1 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-18
Identity = 63/212 (29.72%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 89  RLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALSALN 148
           RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVTMGS EEA  A+ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 176

Query: 149 DLESYEYEGRILRLNYAKVKKEKPAPIVKPKPVTFN---------LFVANLSFEARGKDL 208
              S +  GR +++N+ +V +     +++ K    N         ++  NL +    + L
Sbjct: 177 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 236

Query: 209 KEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFMGRALRVAR 268
           K+ F    G V+ A++++  N  R  G+GF++F+S ++ ++A++   G    GRALR+  
Sbjct: 237 KDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL-- 296

Query: 269 SKQFAKIPDEKSQSEVT-DGVEELATANAGAE 289
                 +  E+ +  V+   VEE  T  A  E
Sbjct: 297 -----NLASEREKPTVSPPSVEEGETEEASLE 319

[Close]

BLAST of Sed0024077.1 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-17
Identity = 58/186 (31.18%), Postives = 94/186 (50.54%), Query Frame = 0


Query: 76  EALASDTQEF----SRTRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNK--IRNRG 135
           E   S+  EF       +L   N+ +D   + +  LF++ GTV   E+ +YN+   ++RG
Sbjct: 134 EGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSRG 193

Query: 136 LAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVKKEKPAPIVKPKPVTFNLFVANLS 195
             FVTM S +EA +A+     Y+  GR+L +N A  +  +P    +     F ++V NL 
Sbjct: 194 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 253

Query: 196 FEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFM 255
           ++     L++ F S  G VV A++V++    R  G+GFV      +   AIS   G+   
Sbjct: 254 WDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 313

[Close]

BLAST of Sed0024077.1 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.7e-17
Identity = 57/192 (29.69%), Postives = 99/192 (51.56%), Query Frame = 0


Query: 70  AATSQDEALASDTQEFSR----TRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNK- 129
           A  S +     + +EF       +L   N+P+D   E +  LF++ G V+++   +YN+ 
Sbjct: 114 AGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRD 173

Query: 130 -IRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVKKEKPAPIVKPKPVTFNL 189
             ++RG  FVTM + EEA  A+     Y+  GR+L +N A  + E+P    +    ++ +
Sbjct: 174 TDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRI 233

Query: 190 FVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEF 249
           +V N+ +      L++ F S  G VVSA++V++    R  G+GFV   S+ +   AI+  
Sbjct: 234 YVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 293

Query: 250 QGKIFMGRALRV 256
            G+   GR +RV
Sbjct: 294 DGQSLDGRTIRV 303

[Close]

BLAST of Sed0024077.1 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-16
Identity = 77/260 (29.62%), Postives = 121/260 (46.54%), Query Frame = 0


Query: 35  SHSVNLCLVSTSLAHNPPISIQPKRSGRCGLIFHLAATSQDEALASDTQEFSRTR----- 94
           S S+NL L S+S+ H+   SI+P  S     +    A S  + L  D +   + R     
Sbjct: 35  SSSLNLSLSSSSIGHS--ASIKPFESSFSTRV----ALSDFDQLEDDVEVAEQPRFSEDL 94

Query: 95  -LLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALSALN 154
            L   N+P+      +  LF++ G V  VE+ +Y+K+  R+RG  FVTM + EE  +A  
Sbjct: 95  KLFVGNLPFSVDSAALAGLFERAGNVEIVEV-IYDKLSGRSRGFGFVTMSTKEEVEAAEQ 154

Query: 155 DLESYEYEGRILRLNY--AKVKKEKP------------------------APIVKPKPVT 214
               YE +GR +R+N   A  K+E                          A   +    +
Sbjct: 155 QFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSS 214

Query: 215 FNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAI 261
             ++V NLS+      LKE F S  GNVV A++V++ +  R  G+GFV + S K+   AI
Sbjct: 215 NRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 274

[Close]

BLAST of Sed0024077.1 vs. ExPASy TrEMBL
Match: A0A6J1FQT2 (RNA-binding protein CP33, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446072 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 2.1e-115
Identity = 225/303 (74.26%), Postives = 257/303 (84.82%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MALVRLPCSSSS+F+RSKQ  PIFLA LSC Q+ S S+N             L+STS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA---SDTQEFSRTRLLAQNVPWDSTPEDIRS 120
           NP I  +  +S R  LIFH A+TSQD+A+A   SDT+EFSRTRLLAQNVPW+STPEDIRS
Sbjct: 61  NPFIFTEGNKSRR--LIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRS 120

Query: 121 LFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVK 180
           LF+K+GTVLDVELSMYNKIRNRGLAFVTM SPEEAL+ALN+LESYE+EGR L+LNYAK+K
Sbjct: 121 LFEKFGTVLDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLK 180

Query: 181 KEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           KEKP+P VKPKPVTFNLFVANLSFEAR KDL+EFFDSGSGN+VSAQI+F+ENPRR SGYG
Sbjct: 181 KEKPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIPDEKSQSEVTDGVEELATANAG 290
           FVAFK+K+DAEAA+SEFQGKIFMGRALRVARSKQF K+P+EKSQSEVT   + +  +NA 
Sbjct: 241 FVAFKTKRDAEAALSEFQGKIFMGRALRVARSKQFVKLPEEKSQSEVT-STDGMVLSNAA 300

[Close]

BLAST of Sed0024077.1 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.1e-114
Identity = 229/306 (74.84%), Postives = 255/306 (83.33%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MA VRLPCSSSSS +RSKQH  IFLA LSC Q+ S+ +N             L+STS+ H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA---SDTQEFSRTRLLAQNVPWDSTPEDIRS 120
           NP ISI  KR+ +   +F  A+TSQDEA++   SD +EFSRTRLLAQNVPWDSTPEDIRS
Sbjct: 61  NPLISIMAKRTSK--FVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRS 120

Query: 121 LFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVK 180
           LF+KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL+ALN+LESYE+EGR LRLNYAK+K
Sbjct: 121 LFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLK 180

Query: 181 KEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           KEKP+P VKPKPVTFNLFVANL FEAR KDL+EFFDSGSGNVVSAQI+F+ENPRR SGYG
Sbjct: 181 KEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIP-DEKSQSE--VTDGVEELATA 290
           FVAFK+KKDAEAAISEFQGK FMGR+LRVARSKQF K+P +EKSQSE   TDGVE    A
Sbjct: 241 FVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVE---LA 300

[Close]

BLAST of Sed0024077.1 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.1e-114
Identity = 229/306 (74.84%), Postives = 255/306 (83.33%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MA VRLPCSSSSS +RSKQH  IFLA LSC Q+ S+ +N             L+STS+ H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA---SDTQEFSRTRLLAQNVPWDSTPEDIRS 120
           NP ISI  KR+ +   +F  A+TSQDEA++   SD +EFSRTRLLAQNVPWDSTPEDIRS
Sbjct: 61  NPLISIMAKRTSK--FVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRS 120

Query: 121 LFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVK 180
           LF+KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL+ALN+LESYE+EGR LRLNYAK+K
Sbjct: 121 LFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLK 180

Query: 181 KEKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           KEKP+P VKPKPVTFNLFVANL FEAR KDL+EFFDSGSGNVVSAQI+F+ENPRR SGYG
Sbjct: 181 KEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIP-DEKSQSE--VTDGVEELATA 290
           FVAFK+KKDAEAAISEFQGK FMGR+LRVARSKQF K+P +EKSQSE   TDGVE    A
Sbjct: 241 FVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVE---LA 300

[Close]

BLAST of Sed0024077.1 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 2.0e-113
Identity = 227/305 (74.43%), Postives = 255/305 (83.61%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVN-----------LCLVSTSLAH 60
           MA VRLPCSSSSS +RSK H  IFLA LSC Q+ S+ +N             L+STS++H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPPISIQPKRSGRCGLIFHLAATSQDEALA--SDTQEFSRTRLLAQNVPWDSTPEDIRSL 120
           +P ISI+ KR+     +F  A+TSQDEA++  SDT+EFS+TRLLAQNVPWDSTPEDIRSL
Sbjct: 61  SPLISIRAKRTST--FVFQFASTSQDEAVSSPSDTEEFSQTRLLAQNVPWDSTPEDIRSL 120

Query: 121 FQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVKK 180
           F+KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL+ALN+LESYE+EGR LRLNYAK+KK
Sbjct: 121 FEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKK 180

Query: 181 EKPAPIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGF 240
           EKP+P VKPKPVTFNLFVANL F+AR KDLKEFFDSGSGNVVSAQI+FNENPRR SGYGF
Sbjct: 181 EKPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGF 240

Query: 241 VAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIP-DEKSQSE--VTDGVEELATAN 290
           VAFK+KKDAEAAISEFQGK FMGR+LRVARSKQF K+P +EK QSE   TDGVE    AN
Sbjct: 241 VAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVE---LAN 300

[Close]

BLAST of Sed0024077.1 vs. ExPASy TrEMBL
Match: A0A6J1E4S9 (31 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111026062 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 9.8e-113
Identity = 224/304 (73.68%), Postives = 250/304 (82.24%), Query Frame = 0


Query: 1   MALVRLPCSSSSSFIRSKQHRPIFLAHLSCPQHQSHSVNLCL---VSTSLAHNPPISIQP 60
           MAL+RLPCSSSSSFIRSKQ  PIFLA LSCPQ+ SHS++  +   +STSL H+P ISI+ 
Sbjct: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRA 60

Query: 61  KRSGRCGLIFHLAATSQDEALAS----------DTQEFSRTRLLAQNVPWDSTPEDIRSL 120
           KR+ +   IF   + S DE +A              EFSRTRLLAQNVPW+STPEDIRSL
Sbjct: 61  KRTSKS--IFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSL 120

Query: 121 FQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSALNDLESYEYEGRILRLNYAKVKK 180
           F+KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL+ALN+LESYEYEGR LRLNYAK+KK
Sbjct: 121 FEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKK 180

Query: 181 EKP-APIVKPKPVTFNLFVANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYG 240
           EKP  P VKPKPVTFNLFVANL ++AR KDLKEFFDSGSGNVVSAQ++FNENPRR SGYG
Sbjct: 181 EKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYG 240

Query: 241 FVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAKIPDE-KSQSEVTDGVEELATANA 290
           FVAFK+KKDAEAAIS+FQGKIFMGR LRVARSKQFAK+P E KSQSEVT     +  ANA
Sbjct: 241 FVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANA 300

[Close]

BLAST of Sed0024077.1 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-68
Identity = 141/261 (54.02%), Postives = 183/261 (70.11%), Query Frame = 0


Query: 35  SHSVNLCLVSTSLAHNP---PISIQPKRSGRCGLIFHLAATSQDEALASDT--------- 94
           +HS++L   S    H     P SI  K      L  + + T+Q+  L S +         
Sbjct: 31  NHSLSLSTPSLCRLHRHATFPDSIPAKSR---NLTSYFSTTTQEPVLESSSSSSSAPEVV 90

Query: 95  -QEFSRTRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEA 154
            +E S+TRL+AQNVPW STPEDIRSLF+KYG+V+D+E+SM+ K RNRGL F+ M SPEEA
Sbjct: 91  EEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEA 150

Query: 155 LSALNDLESYEYEGRILRLNYAKVKKEKP-APIVKPKPV-TFNLFVANLSFEARGKDLKE 214
            +AL  LES EYEGR L+++YAK KK+K  AP   P PV TFNLFVANL+FEAR K LKE
Sbjct: 151 ATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKE 210

Query: 215 FFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFMGRALRVARSK 273
           FFD+ +GNVVS +++F+ENPRR SGYGFV+FK+KK AEAA+ EFQGK F+GR +R+A+SK
Sbjct: 211 FFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSK 270

[Close]

BLAST of Sed0024077.1 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-67
Identity = 126/197 (63.96%), Postives = 159/197 (80.71%), Query Frame = 0


Query: 86  SRTRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALSAL 145
           S+TRL+AQNVPW STPEDIRSLF+KYG+V+D+E+SM+ K RNRGL F+ M SPEEA +AL
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 146 NDLESYEYEGRILRLNYAKVKKEKP-APIVKPKPV-TFNLFVANLSFEARGKDLKEFFDS 205
             LES EYEGR L+++YAK KK+K  AP   P PV TFNLFVANL+FEAR K LKEFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 206 GSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFMGRALRVARSKQFAK 265
            +GNVVS +++F+ENPRR SGYGFV+FK+KK AEAA+ EFQGK F+GR +R+A+SKQF K
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 266 I--------PDEKSQSE 273
           +        P+E+++ E
Sbjct: 212 LQAKEGLQPPEEEAEEE 228

[Close]

BLAST of Sed0024077.1 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-30
Identity = 79/213 (37.09%), Postives = 121/213 (56.81%), Query Frame = 0


Query: 72  TSQDEALASDTQEFSRTRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKIRNRGLA 131
           TSQ+E          + +L   N+PW  +  DI  LF + GTV +VE+      +NRG A
Sbjct: 79  TSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFA 138

Query: 132 FVTMGSPEEALSALNDLESYEYEGRILRLNYA-KVKKEKP-----APIVKPKPVTFNLFV 191
           FVTM S EEA +A++  ++++  GRI+ +++A + KK  P      P   P      L+V
Sbjct: 139 FVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYV 198

Query: 192 ANLSFEARGKDLKEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQG 251
           +NL+++AR   L+E F +   N VSA++VF +   R SGYGFV+F ++++AE AI++  G
Sbjct: 199 SNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNG 258

Query: 252 KIFMGRALRVARSKQFAKIPDEKSQSEVTDGVE 279
           K  MGR + +  S + A      S+SE  D VE
Sbjct: 259 KEIMGRPITLKFSLRSA------SESEDGDSVE 285

[Close]

BLAST of Sed0024077.1 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-19
Identity = 63/212 (29.72%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 89  RLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALSALN 148
           RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVTMGS EEA  A+ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 176

Query: 149 DLESYEYEGRILRLNYAKVKKEKPAPIVKPKPVTFN---------LFVANLSFEARGKDL 208
              S +  GR +++N+ +V +     +++ K    N         ++  NL +    + L
Sbjct: 177 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 236

Query: 209 KEFFDSGSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFMGRALRVAR 268
           K+ F    G V+ A++++  N  R  G+GF++F+S ++ ++A++   G    GRALR+  
Sbjct: 237 KDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL-- 296

Query: 269 SKQFAKIPDEKSQSEVT-DGVEELATANAGAE 289
                 +  E+ +  V+   VEE  T  A  E
Sbjct: 297 -----NLASEREKPTVSPPSVEEGETEEASLE 319

[Close]

BLAST of Sed0024077.1 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-19
Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 0


Query: 88  TRLLAQNVPWDSTPEDIRSLFQKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALSAL 147
           T+L   N+P++     +  + Q +     VE+ +YN+   ++RG AFVTM + E+    +
Sbjct: 85  TKLYFGNLPYNVDSATLAQIIQDFANPELVEV-LYNRDTGQSRGFAFVTMSNVEDCNIII 144

Query: 148 NDLESYEYEGRILRLNYAKVKKEKPAPIVKP--KPVTFNLFVANLSFEARGKDLKEFFDS 207
           ++L+  EY GR L++N+A    +KP P  +P        LFV NLS+    + L   F  
Sbjct: 145 DNLDGTEYLGRALKVNFA----DKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE 204

Query: 208 GSGNVVSAQIVFNENPRRPSGYGFVAFKSKKDAEAAISEFQGKIFMGRALRV--ARSKQF 262
             G+VV A++VF+ +  R  GYGFV + SK + E A+    G    GRA+RV  A+ K+F
Sbjct: 205 -CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258

The following BLAST results are available for this feature:

BLAST of Sed0024077.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940500.1	4.4e-115	74.26	RNA-binding protein CP33, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_038897887.1	2.2e-114	75.16	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_008466190.1	6.3e-114	74.84	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 ...	[more]
KAG6608265.1	8.2e-114	74.92	RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_004136268.1	4.1e-113	74.43	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetic...	[more]

BLAST of Sed0024077.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19682	1.2e-19	31.38	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	2.3e-18	29.72	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q04836	2.0e-17	31.18	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P19683	5.7e-17	29.69	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P49314	1.3e-16	29.62	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Sed0024077.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQT2	2.1e-115	74.26	RNA-binding protein CP33, chloroplastic-like isoform X2 OS=Cucurbita moschata OX...	[more]
A0A5A7TBD1	3.1e-114	74.84	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	3.1e-114	74.84	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A0A0LEN0	2.0e-113	74.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]
A0A6J1E4S9	9.8e-113	73.68	31 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Sed0024077.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	1.5e-68	54.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	8.1e-67	63.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	2.1e-30	37.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.6e-19	29.72	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	6.3e-19	34.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 182..256 e-value: 2.1E-20 score: 83.8 coord: 89..161 e-value: 1.1E-14 score: 64.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 93..158 e-value: 4.1E-12 score: 45.8 coord: 183..254 e-value: 8.9E-17 score: 60.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 181..260 score: 17.369957
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 88..165 score: 16.380745
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 170..279 e-value: 2.6E-21 score: 78.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 68..169 e-value: 9.4E-20 score: 73.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..289
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 1..272
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 1..272
None	No IPR available	CDD	cd00590	RRM_SF	coord: 94..161 e-value: 7.42892E-17 score: 71.5673
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 88..257

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0024077	Sed0024077	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024077.1-three_prime_utr	Sed0024077.1-three_prime_utr-LG13:26142136..26142416	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024077.1-exon	Sed0024077.1-exon-LG13:26142136..26142548	exon
Sed0024077.1-exon	Sed0024077.1-exon-LG13:26142874..26143158	exon
Sed0024077.1-exon	Sed0024077.1-exon-LG13:26143695..26143793	exon
Sed0024077.1-exon	Sed0024077.1-exon-LG13:26144533..26144996	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024077.1-cds	Sed0024077.1-cds-LG13:26142417..26142548	CDS
Sed0024077.1-cds	Sed0024077.1-cds-LG13:26142874..26143158	CDS
Sed0024077.1-cds	Sed0024077.1-cds-LG13:26143695..26143793	CDS
Sed0024077.1-cds	Sed0024077.1-cds-LG13:26144533..26144886	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024077.1-five_prime_utr	Sed0024077.1-five_prime_utr-LG13:26144887..26144996	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0024077.1	Sed0024077.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding