Sed0023852.1 (mRNA) Chayote v1

Overview


Name	Sed0023852.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG12: 33411213 .. 33414106 (+)
Sequence length	1119
RNA-Seq Expression	Sed0023852.1
Synteny	Sed0023852.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGTAGCAACTAGAAGAGTAACCTCATCCACCGGGTTTGTGTTTCAAAGCAAATAATCCCATTCATTAAATTCAATTTAAGCACCTGATTACATTAATCCTCGATTTATGAACAATCTTAATTACAATGGGAAAGCGCAAGCGAGGATCTGATCACACCTTCCCCGATCGTCCTCCTCATCTCTCTGGTATGATCTCTCCTAAACCCCATCATGCTCTGTTTCTGTTCGAAGAAATGTCTCAATGAAATCAATTATTCCTCTGCGTCGATACACAGTTTTTGTTCTCTGAAATGTCGCTCCAGACCATCAAATCGCTTTGTTTGAGCTTTGAAATGGATGGGGGCCCTTTTGGGGATATGGGTTTTGTTAGTAATTGCCATTTTTGGAAATTCAAATTGGGTCTATGAGAGTTTTGTGAGATGGGGTTTTAATGGATGGGCATATTATGATTAATCTCACTCATTTGGTTACTCTTCAATACCTCTTGAAATGGATACATTTGAGTTCTATTTCTTTAGACCTGATGTGTTTTATTCTGATTTTCTTATGTTTTGTCCGAATGTTGCAGGTATAGTGCCCTTTTCCAATCAAATGGATGTGCGGTCGGTAGAGGTTTGTACTCTTTTGGTTGCTTCAGAAATTCTATCCCTGTTAAAAATGAGAAACTCATTATATTTTCATTTGTTTTTTTTTTGTTCGTATATCGGTTAGTGTTCTAGTCGTTGTTACGAGAGCCCTCGAACCTACTACATTTGGTTATCGAGGAAACCGATAAATGAATTCCTATGTTGGTGGCTGGCTAACATGGATGTAATCCACAATCTCTTTTGATCTCACTATGGTTCTCTATACTTTACTTTGTTTTTTTTATATATTCGTGAGTGTTCAAGTCAGCTTATGTGTACCTAGGCTATTCTTACGTAATGGAACAACCTTGAAACCTATTATATTTGGTTGTTAAGAAAATTCATAACTTTTTAGTTTGCTAAGTTCCTTTTGACCTAACCATTAGGCCAATTCATGATGGTTCTATATGCTTTACTTTATTATTTGTACTTGCATGCTTCCTTGACCTATCTAGCTCAAGCTTCAATGAGTATGCAAAAGAACAGTTTTAAACTTTCCCTTACTAGAGAAACATTTAGCTCTAAGTTTTTTCCCTTTAGTGGACCACATTCTATTAAAGCTACTACACATGGAACAAGCAGGATCAGAGTCTTTCCCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAGCCATCAATATTGTCGCCGAGGTTCAGCTAGTCAACCAAATACATACCGTGGAAATCGAGTCAGTACCATACATGAAGAGCGGCCCGCCTTTAAATTTGGTGCTCATTGCAACTCAGAGACTTCAGACCGTATAGGTACACCCTTTTTGAAGCTCCTAAACTCGGTTGGACACGATTTCTTAGTGGGGAGTGAGAGTACTTTTTGTGATGGCATGTTTGCTTGTAATGTTCTTTAATGTTATCAGGTGTTTTAAAATTCATACCATGTATACTATGTGGCCGTATCTAATTAGATGAAAAAGATGCGTGTTGGTTCATATAATTATATTTACCCCAACTCATGAGGTTAAGCTTTGGGTTGATTGGTGAATTAACATAATTCAACAATCTGAAATAAATGTCCTAGAATAACATTTTTTTGTATGCCACGTCTCGAATAAGTAAAATTGACATTTCTTCTGGTTGGATGACTAGGCACCTTGCTTTTTTAGGATTTCATATTCTTTGTGACATCAATATATTGAATATCAGTTGCCTATGCTGTCTGTCTCATTCATTTGCAGCTTTGGTGATTCAATCTCCACAGGAAAAAAGAAGTAAATTTGAGTACTTTGAATTATGTATAAAGAAAAGGGAGTTCTTTTTTTAAAAAAAATTACATATGGGGTTGGGGGACTCGAACCTCAAACCTCGTGATTGTTAGGACATTAGAAATGTGAGCTATGTTCCCTTTGGCTAAAGAACAGTGAGTTTTGTGGCATGAAACACTTAACAAACTATTAATATATCATACACCTTGAATCAAGTTTGGTTTTTCCATCAAGATAAATCCTAACAATCATCTACAAAATGAAGATGGGGAAAAGAATTGCTTCTTTTACATTGATGGTGCTGTTGTTCTGTATTAACTCAACCTTTTGCATTGAATTTAGATGGCATTGGGAGCACCTTCTTGGGGCCAGAAAGGATAATGTACAATTCCCTGGGGAAGAATGCAATTTCATCTCATGGAATGAGAATGCTATGTGGGATTTGTCATAAGCTGATGAAACGAAAGCTTTGCTTCCTCGGCAACACGCTGTCTTCCCATGAACCTCCTGTAGCTGCGGTTTTGGTCTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAGCGTCGAAGACAGGAGCGATCCACCTTGTCCATTGTGCACGGAGATGGAGCTGCCTATCGAAGACTGAAAAGGAGAACAGGAATGAGTTGAATGTACATATGTTATCAAATCACACCAACAATAGGAATTAGGATTGCCTTTGACTTGAATGGATAGCTGGAAACTTGGAGTTTTCGCATCATCGACTGTTTTTCCATGAACTAATCTGTGTTTTCTGGATGGATGTGCAGAAAAGGAAAATAGTTGCCTTAAACCATAACCATACAGAAAATAGCGATAACGAGTCTTCGAAAAATGACAGCAAATTGTGCTCCATAGATTGGTTTTTGTGTAGAAGTAGACTGATTGGTACAAGTCCGTTTGTTACCTTCTAGATTTTTGTTATCTAGCAGCAGAGGAATTTAGTTGAAACATTATGTACTTTAGAGCAATGTCTAAAACAGTATATTTTAGAAACAATATATGTGGGG

mRNA sequence

ATCCGTAGCAACTAGAAGAGTAACCTCATCCACCGGGTTTGTGTTTCAAAGCAAATAATCCCATTCATTAAATTCAATTTAAGCACCTGATTACATTAATCCTCGATTTATGAACAATCTTAATTACAATGGGAAAGCGCAAGCGAGGATCTGATCACACCTTCCCCGATCGTCCTCCTCATCTCTCTGGTATAGTGCCCTTTTCCAATCAAATGGATGTGCGGTCGGTAGAGGATCAGAGTCTTTCCCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAGCCATCAATATTGTCGCCGAGGTTCAGCTAGTCAACCAAATACATACCGTGGAAATCGAGTCAGTACCATACATGAAGAGCGGCCCGCCTTTAAATTTGGTGCTCATTGCAACTCAGAGACTTCAGACCGTATAGATGGCATTGGGAGCACCTTCTTGGGGCCAGAAAGGATAATGTACAATTCCCTGGGGAAGAATGCAATTTCATCTCATGGAATGAGAATGCTATGTGGGATTTGTCATAAGCTGATGAAACGAAAGCTTTGCTTCCTCGGCAACACGCTGTCTTCCCATGAACCTCCTGTAGCTGCGGTTTTGGTCTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAGCGTCGAAGACAGGAGCGATCCACCTTGTCCATTGTGCACGGAGATGGAGCTGCCTATCGAAGACTGAAAAGGAGAACAGGAATGAGTTGAATGTACATATGTTATCAAATCACACCAACAATAGGAATTAGGATTGCCTTTGACTTGAATGGATAGCTGGAAACTTGGAGTTTTCGCATCATCGACTGTTTTTCCATGAACTAATCTGTGTTTTCTGGATGGATGTGCAGAAAAGGAAAATAGTTGCCTTAAACCATAACCATACAGAAAATAGCGATAACGAGTCTTCGAAAAATGACAGCAAATTGTGCTCCATAGATTGGTTTTTGTGTAGAAGTAGACTGATTGGTACAAGTCCGTTTGTTACCTTCTAGATTTTTGTTATCTAGCAGCAGAGGAATTTAGTTGAAACATTATGTACTTTAGAGCAATGTCTAAAACAGTATATTTTAGAAACAATATATGTGGGG

Coding sequence (CDS)

ATGGGAAAGCGCAAGCGAGGATCTGATCACACCTTCCCCGATCGTCCTCCTCATCTCTCTGGTATAGTGCCCTTTTCCAATCAAATGGATGTGCGGTCGGTAGAGGATCAGAGTCTTTCCCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAGCCATCAATATTGTCGCCGAGGTTCAGCTAGTCAACCAAATACATACCGTGGAAATCGAGTCAGTACCATACATGAAGAGCGGCCCGCCTTTAAATTTGGTGCTCATTGCAACTCAGAGACTTCAGACCGTATAGATGGCATTGGGAGCACCTTCTTGGGGCCAGAAAGGATAATGTACAATTCCCTGGGGAAGAATGCAATTTCATCTCATGGAATGAGAATGCTATGTGGGATTTGTCATAAGCTGATGAAACGAAAGCTTTGCTTCCTCGGCAACACGCTGTCTTCCCATGAACCTCCTGTAGCTGCGGTTTTGGTCTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAGCGTCGAAGACAGGAGCGATCCACCTTGTCCATTGTGCACGGAGATGGAGCTGCCTATCGAAGACTGA

Protein sequence

MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRGSASQPNTYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPLCTEMELPIED

Homology

[Close]

BLAST of Sed0023852.1 vs. NCBI nr
Match: XP_008443927.1 (PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo] >KAA0050085.1 uncharacterized protein E6C27_scaffold675G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 4.8e-81
Identity = 153/197 (77.66%), Postives = 166/197 (84.26%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRG 60
           MGKRKRGSD T  D P HLSG+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  SASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKN 120
           S SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSLGK+
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDR 180
           AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTEMELPIED 196
           SDPPCPLCT++   ++D
Sbjct: 181 SDPPCPLCTKLPPEVDD 197

[Close]

BLAST of Sed0023852.1 vs. NCBI nr
Match: XP_022134599.1 (uncharacterized protein LOC111006826 [Momordica charantia])

HSP 1 Score: 310.8 bits (795), Expect = 8.1e-81
Identity = 155/198 (78.28%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 1   MGKRKR-GSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRR 60
           MGKRKR  SDHT PD P HLSG+VPFSNQMDV S EDQSL+RPVFMKRSRHQYSHQYCRR
Sbjct: 1   MGKRKRASSDHTHPDPPLHLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRR 60

Query: 61  GSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGK 120
           GS SQ N  T R NRV T+ EERPAFKF AHCNSE  + I+ I +TF GPERI Y+SLGK
Sbjct: 61  GSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGK 120

Query: 121 NAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVED 180
           +AISSHG+RMLCGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHADCLE RS VED
Sbjct: 121 DAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVED 180

Query: 181 RSDPPCPLCTEMELPIED 196
           RSDPPCPLCTE    I+D
Sbjct: 181 RSDPPCPLCTEPSTKIDD 198

[Close]

BLAST of Sed0023852.1 vs. NCBI nr
Match: TYK06338.1 (uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 152/197 (77.16%), Postives = 166/197 (84.26%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRG 60
           MGKRKRGSD T  D P HLSG+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  SASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKN 120
           S SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSLGK+
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDR 180
           AISSH +RM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDR
Sbjct: 121 AISSHLVRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTEMELPIED 196
           SDPPCPLCT++   ++D
Sbjct: 181 SDPPCPLCTKLPPEVDD 197

[Close]

BLAST of Sed0023852.1 vs. NCBI nr
Match: XP_038878632.1 (uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida])

HSP 1 Score: 304.7 bits (779), Expect = 5.8e-79
Identity = 149/197 (75.63%), Postives = 161/197 (81.73%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRG 60
           MGKRKRGSD T  D P HLSG+VPFSNQMDVRS ED+S +RPVFMKRSRHQYSHQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQMDVRSEEDRSPARPVFMKRSRHQYSHQYCRRG 60

Query: 61  SASQPNT--YRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKN 120
           S S  N    R NRV T+ EERPAFKF AHCNSE  D I+ I  TF GPERI YNS GK+
Sbjct: 61  STSHANASMSRENRVKTVLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGKD 120

Query: 121 AISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDR 180
           A SSHGMRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRS+VEDR
Sbjct: 121 AFSSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDR 180

Query: 181 SDPPCPLCTEMELPIED 196
           SDPPCPLC E    ++D
Sbjct: 181 SDPPCPLCMEPPPEVDD 197

[Close]

BLAST of Sed0023852.1 vs. NCBI nr
Match: XP_038878631.1 (uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida])

HSP 1 Score: 300.1 bits (767), Expect = 1.4e-77
Identity = 149/198 (75.25%), Postives = 161/198 (81.31%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVE-DQSLSRPVFMKRSRHQYSHQYCRR 60
           MGKRKRGSD T  D P HLSG+VPFSNQMDVRS E D+S +RPVFMKRSRHQYSHQYCRR
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQMDVRSEEQDRSPARPVFMKRSRHQYSHQYCRR 60

Query: 61  GSASQPNT--YRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGK 120
           GS S  N    R NRV T+ EERPAFKF AHCNSE  D I+ I  TF GPERI YNS GK
Sbjct: 61  GSTSHANASMSRENRVKTVLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGK 120

Query: 121 NAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVED 180
           +A SSHGMRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRS+VED
Sbjct: 121 DAFSSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVED 180

Query: 181 RSDPPCPLCTEMELPIED 196
           RSDPPCPLC E    ++D
Sbjct: 181 RSDPPCPLCMEPPPEVDD 198

[Close]

BLAST of Sed0023852.1 vs. ExPASy TrEMBL
Match: A0A5A7U906 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00690 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.3e-81
Identity = 153/197 (77.66%), Postives = 166/197 (84.26%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRG 60
           MGKRKRGSD T  D P HLSG+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  SASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKN 120
           S SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSLGK+
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDR 180
           AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTEMELPIED 196
           SDPPCPLCT++   ++D
Sbjct: 181 SDPPCPLCTKLPPEVDD 197

[Close]

BLAST of Sed0023852.1 vs. ExPASy TrEMBL
Match: A0A1S3B956 (uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.3e-81
Identity = 153/197 (77.66%), Postives = 166/197 (84.26%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRG 60
           MGKRKRGSD T  D P HLSG+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  SASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKN 120
           S SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSLGK+
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDR 180
           AISSH MRM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTEMELPIED 196
           SDPPCPLCT++   ++D
Sbjct: 181 SDPPCPLCTKLPPEVDD 197

[Close]

BLAST of Sed0023852.1 vs. ExPASy TrEMBL
Match: A0A6J1BZ68 (uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006826 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.9e-81
Identity = 155/198 (78.28%), Postives = 166/198 (83.84%), Query Frame = 0


Query: 1   MGKRKR-GSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRR 60
           MGKRKR  SDHT PD P HLSG+VPFSNQMDV S EDQSL+RPVFMKRSRHQYSHQYCRR
Sbjct: 1   MGKRKRASSDHTHPDPPLHLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRR 60

Query: 61  GSASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGK 120
           GS SQ N  T R NRV T+ EERPAFKF AHCNSE  + I+ I +TF GPERI Y+SLGK
Sbjct: 61  GSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGK 120

Query: 121 NAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVED 180
           +AISSHG+RMLCGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHADCLE RS VED
Sbjct: 121 DAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVED 180

Query: 181 RSDPPCPLCTEMELPIED 196
           RSDPPCPLCTE    I+D
Sbjct: 181 RSDPPCPLCTEPSTKIDD 198

[Close]

BLAST of Sed0023852.1 vs. ExPASy TrEMBL
Match: A0A5D3C5B4 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00020 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.7e-81
Identity = 152/197 (77.16%), Postives = 166/197 (84.26%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRG 60
           MGKRKRGSD T  D P HLSG+VPFSNQ DVRS ED SL+RP+FMKRSRH YSHQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  SASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKN 120
           S SQ N  T R NRV T+ EERPAFKF AHCNSE  DRI+ I STF GPERI YNSLGK+
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDR 180
           AISSH +RM+CGIC KLM+RKLCFLGNTLSS E PVAAVLVCGHVYHA+CLENRSSVEDR
Sbjct: 121 AISSHLVRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTEMELPIED 196
           SDPPCPLCT++   ++D
Sbjct: 181 SDPPCPLCTKLPPEVDD 197

[Close]

BLAST of Sed0023852.1 vs. ExPASy TrEMBL
Match: A0A6J1HAS2 (uncharacterized protein LOC111461650 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461650 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.9e-78
Identity = 147/197 (74.62%), Postives = 162/197 (82.23%), Query Frame = 0


Query: 1   MGKRKRGSDHTFPDRPPHLSGIVPFSNQMDVRSVEDQSLSRPVFMKRSRHQYSHQYCRRG 60
           MGKRK GSD T  DRP HLSGIVPFSNQMDVRS ED+SL+RP+FMKRSRHQYSHQYCRRG
Sbjct: 7   MGKRKPGSDQTHHDRPHHLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRG 66

Query: 61  SASQPN--TYRGNRVSTIHEERPAFKFGAHCNSETSDRIDGIGSTFLGPERIMYNSLGKN 120
           S S+ N  T R NRV TI E+RPAFKF AHCNSE  D I+   STFL PERI YNSLGK+
Sbjct: 67  STSEANASTSRENRVRTILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKD 126

Query: 121 AISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDR 180
            ISSHG +++CGIC KLM+RKLCFLGNTLSS E P+AAVLVCGHVYHADCLEN S+VEDR
Sbjct: 127 TISSHGRKIVCGICQKLMRRKLCFLGNTLSSSELPIAAVLVCGHVYHADCLENGSNVEDR 186

Query: 181 SDPPCPLCTEMELPIED 196
           SDP CPLC E    ++D
Sbjct: 187 SDPGCPLCMEPPAKVDD 203

[Close]

BLAST of Sed0023852.1 vs. TAIR 10
Match: AT1G75400.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 126 RMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHADCLENRSSVEDRSDPPCPL 185
           + +CG C KL+  +     +++++ E P+AAVL CGHVYHA+CLE  ++  ++ DP CP+
Sbjct: 278 QQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPI 334

Query: 186 CT 188
           CT
Sbjct: 338 CT 334

[Close]

BLAST of Sed0023852.1 vs. TAIR 10
Match: AT1G19680.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 106 GPERIMYNSLGKNAISSHGMRMLCGICHKLMKRKLCFLGNTLSSHEPPVAAVLVCGHVYH 165
           G  R+   S  + + S    +  CG C KL+  +     + ++  + P+ AVL CGHVYH
Sbjct: 250 GRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTER-----SPVARFDLPIPAVLACGHVYH 309

Query: 166 ADCLENRSSVEDRSDPPCPLCTEMEL 192
           A CLE  ++  ++ DP CP+CTE ++
Sbjct: 310 AACLETMTNETEKYDPTCPICTETQV 330

[Close]

BLAST of Sed0023852.1 vs. TAIR 10
Match: AT4G39140.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-10
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 115 LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHAD 174
           L ++ I  HG RM       CG C + L ++ L        ++E  V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 175 CLENRSSVEDRSDPPCPLCT 188
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

[Close]

BLAST of Sed0023852.1 vs. TAIR 10
Match: AT4G39140.2 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-10
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 115 LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHAD 174
           L ++ I  HG RM       CG C + L ++ L        ++E  V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 175 CLENRSSVEDRSDPPCPLCT 188
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

[Close]

BLAST of Sed0023852.1 vs. TAIR 10
Match: AT4G39140.3 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-10
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 115 LGKNAISSHGMRM------LCGICHK-LMKRKLCFLGNTLSSHEPPVAAVLVCGHVYHAD 174
           L ++ I  HG RM       CG C + L ++ L        ++E  V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 175 CLENRSSVEDRSDPPCPLCT 188
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

The following BLAST results are available for this feature:

BLAST of Sed0023852.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443927.1	4.8e-81	77.66	PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_022134599.1	8.1e-81	78.28	uncharacterized protein LOC111006826 [Momordica charantia]	[more]
TYK06338.1	1.4e-80	77.16	uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa]	[more]
XP_038878632.1	5.8e-79	75.63	uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida]	[more]
XP_038878631.1	1.4e-77	75.25	uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida]	[more]

BLAST of Sed0023852.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023852.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U906	2.3e-81	77.66	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3B956	2.3e-81	77.66	uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1BZ68	3.9e-81	78.28	uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3C5B4	6.7e-81	77.16	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1HAS2	6.9e-78	74.62	uncharacterized protein LOC111461650 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0023852.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75400.1	1.9e-11	43.55	RING/U-box superfamily protein	[more]
AT1G19680.1	1.6e-10	34.88	RING/U-box superfamily protein	[more]
AT4G39140.1	4.7e-10	38.75	RING/U-box superfamily protein	[more]
AT4G39140.2	4.7e-10	38.75	RING/U-box superfamily protein	[more]
AT4G39140.3	4.7e-10	38.75	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 129..186 e-value: 4.1E-4 score: 29.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 129..187 score: 10.276328
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 129..184 e-value: 4.2E-6 score: 26.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 111..189 e-value: 7.1E-7 score: 30.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR31150	EXPRESSED PROTEIN	coord: 36..189
None	No IPR available	PANTHER	PTHR31150:SF6	CHROMATIN REGULATOR PHD FAMILY-RELATED	coord: 36..189
None	No IPR available	CDD	cd16448	RING-H2	coord: 129..186 e-value: 2.7499E-4 score: 35.5055
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 123..188

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0023852	Sed0023852	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023852.1-five_prime_utr	Sed0023852.1-five_prime_utr-LG12:33411213..33411340	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023852.1-exon	Sed0023852.1-exon-LG12:33411213..33411401	exon
Sed0023852.1-exon	Sed0023852.1-exon-LG12:33411784..33411827	exon
Sed0023852.1-exon	Sed0023852.1-exon-LG12:33412424..33412610	exon
Sed0023852.1-exon	Sed0023852.1-exon-LG12:33413408..33414106	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023852.1-cds	Sed0023852.1-cds-LG12:33411341..33411401	CDS
Sed0023852.1-cds	Sed0023852.1-cds-LG12:33411784..33411827	CDS
Sed0023852.1-cds	Sed0023852.1-cds-LG12:33412424..33412610	CDS
Sed0023852.1-cds	Sed0023852.1-cds-LG12:33413408..33413703	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023852.1-three_prime_utr	Sed0023852.1-three_prime_utr-LG12:33413704..33414106	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0023852.1	Sed0023852.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding