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Sed0023650.5 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTACAGTTGGGTCTGCTTTTTTTCCCCACTCTCTATCTTTGTTTCTATGTGTTTTAAATTTAGAGAGGAATGAATTATGCATGAGAGCATGATTTTGGTGCTATATTTGTGGTCCATTCCTTTAGAATTTGTGTTTTTATATTCTCTTGGAGTTAAAGAAACGATTGGCATTCATGATTGAATTTGGTTTCTTAATGAGATTGAGGAGGAGAAGACAATGCTTTCCATCTTGCTCTTCCCTCAAAGAAGTAATCCACCCATCAATTTCTCTGTGTTCAGATTTATCATTTGTCTGCATATTGAAACTAAAATCAATGTCTTGATTATTGAAATTGTGCTGGGAGTGCCCATTTTCTGATTTTCTTCTTCTGTTGTTGTTTTCCTTGTGTGAAAAGAGGAGCTTCTTTTTTCAGTATTCTGTATATTGTGTCTTTGATGAAAATCAACGTCTTAGTGTGCAAAATGTTGAGTGTTAGTGTAATGTTCTTGTCAAATGGTCAAAGCTATTTTCCCTCCTCATGTGGTGCCTTCTGTTCTTAACTGTGTATATGTATATGACTATCATTTTCATATTAGTGACCATCATGGAGTTGCCTAATGGTCAAGAGGGCTTTGGTGTGCATAAGAGATTATGGGTTCAATCCATGATGGCTACTTACCTAAGAATTAATTTCCTACGGATTTTCTTGACATCCAAATGTTGTAGGGTCAGGAAATATGTCCCATGACATTAGTCGAGGTGCGCGCAAGCTGACCCGAAAAGTCACAAATATAAAAAAAAAACTATCATTTTCATATTAGTTAATCAGTGTGATTGTTAACGGCAACACACTCTGATGAAATTGGCATTGCATCACTTCTTTCTGCAAATCTTTTCATTGACATTTAAATGTGGAAAATTATTCTAGGTCGATGAAGATGAAATATATTGGAGACAGAGAAGGGGTGACGAAGAGTTAGAATGGTCTCGTAGTTCCACCCATGTACTTTTACAGCTAGCTCAATGTTTTAGTGAGTATAGAGCTCGGTTTGAATCTCTTTTTATGGTATTGAGATGAACTTCTGGAATTATGATTTTGTGGAATTTACATGTGCTTTTATATGCTCACCATGTTTCAGTGTCACCATGTTGCTTACAAATTAGCTTGTGGTAAATGTAGCTAAGGCTATGGTTGGACCGCGATCATGGATCGCAGGACTCTTCAATCGCACAGGCAACAAAAAGAATGATAAGTTTCTTAACTACACGTTGAGTTCTATTCAGGTAAATAATGATACTAATGCATTGTAGTGTTGATAAGTGTATGCTTAATGTATCATGGATTTTCCATTTTTTATGTTCTGGTCAATGTTTCAAAAAGCGTTTGAGGCGGCAAGAAAAAGCCTCAAGGCTTCCGCCTTGAGAGTAGAGAATGAGGCTTACGCCTCTTTGGAGAGAAGGTTAAAGCCTCAGAGGCAAAGGGCATATGCCTTTTGTTTAAATTAATTTTTAACTTCTTGTTTGCTAATTCTTAAAGTTAGGAAATCATTATCAATTATTCTTATCAGAGAAATAAAAAAGGACATCAATTTCTTTTTCCTTTTGACAACACAAGTTGAGATGGATTTTATTTATTTCTTTCTTCTATTTATCGAGTGTTCAACATTTTTTTATTATTCACTTAGTTAAACAATGTTTTATTATCTTTTTTTTTTGTTTCTCTATTTTTGTAATACATTATTACATTTATTTTTTTTACCAAGGGATGTTTACATATTTTCCTTTCATTCTTCCCTTATTTTTCTCTATTTTGTTTAACTATATTTTCTTTGAGTTTTAATTATAAAATTATATATTCTTATATAATTCTTATGAGTTATTGTTTCTATTTTTTCATGTTTTTTTTATAATTATTATTATGAGCTATTGCTCATTTTGGAACTTGTTATACTTATTATATTATATTTTTTATGATAATATTTTCGTTTTCTTCATTTATTTCTTATTTTATTTTTCCTTTTATAGAAAACTACTACCTATTTTCTTTTCTTAATTATTTATTACTAATAAGTGTTATTATTATTCTATAGTTTCCCAAAAAAATATTATGTAGTTGTAACTTAGTATCTTCTCGTTTTTCGTTCCAGTGAGGGTTGGAAAAAGATGGTTGGAAATGCTATGAAAACAAATGAAGGGGTATTGACATTGGATGATGGAGAATTGATGGATAAATAATCTTTAGATTACTGTTAACAAAATTTTAATACACTATTGAGATTTTTTTTTATAAAGTTGTTTAAATTTTTTTAGATTTGTCTACTTTTAAGAAGTATTACAAAGTTATGAATGTAAAAGGTTTTAATTTTGAAGATTTAAATATATTTTTTATCTTTAAAATGAGGCTTACGCCTCGCCTCATCAGAAGAAAACGCCTCAAGGCCACTTTAAGCCTTTTAAAACATTGGTTCTAGTATTCTACATTAGGTGGTAGATGGGGATGAATATCGGTACCTCAGTAAGAGGTAAGCTTTCACCTCTTGTGCTAGCTTTTGGCATTTGTAGGCCATTGGCACCTACGAGTGGTACCGGAGTTTAATTTATAACTACGTTCGAGGGCAGTTGTGGGTAGTGTTAGATTTAACACTTCAATTTTTGTTTCAGTAGCAAAGGACTTATGTAATTATCAGTTAGGTTTCATTCTCTTGAATTGAAGTCTCTTCTTGTAGTTTGTTGGCTGGTTTTTTTGTTTTTATGCCATAGTATATTCTTTCCTTTCTCTCAATGTATTAAAAAAATGTTGCAACAACCCAACTCAATAGTCCACAGAAGTTTAGGTTGATAGTGAGATTTAATCCAAATTACGACATAATGTTTAAAGGGGAGGTTGTTGGGCTATCCCATATAAATGGTGGAAGGACTTGGATTTTGGTCTAGAAGTGTGAGGGAAAAATAAAAACTTATTCTTTGATCCAACTTTTAATGTACAAAGGTTCATTTTGTGCCAAGTGTTTTGTCCTTCAATTATTTTTGCCTAGGGGACACACTTTGAGCTCATCCCCTTTCTCTCCACCAATCTATAGACCATGCATCTTCTAGATCCTTATAGATCCTTTTGGAGGTAGTAGGTTTGAAAATATGCATAGATTATGGACCTATATTAGACAGCTCGATTTCTTTATGCCCTCTGTTTATTAATTTAAAGTGCGTGGCCTCCCTTTTACTGGAGGACACCTTCTAATATTCTAAGTAAATATAGTTATATTTAAAACTATTCTCTTAACGACTTGTTAATAATGGAATATGAAGGTTGAGCATATGTTCTAACGTGGGATTGATGCTATCAGGAGGAAAGGCTTCAGAGGCTACAAGACCGAATGCGTATACCTTTTGATGAGACACAACTTGATCATCAAGTATTTTTCTTTATCTGTTTTAGCACTCCTCAGATTTTGAACTTCTACAATGATTATCTGGTCTAACATTCTTGCCAATACAATATCCTACGTTCTGGATTGTAATCTCTAATAAACAATATAGCTATAGAACACTTTGAGATGAGTTCTTATTAGTCTTCGGCTCTTAGCAATGATCATAGTGCATTTTCTTCATCGAAAAAGGCCATACATTAATCACTCAGGTCTTTGATATACTTCAATTCCTAGACACAATGGTCCCCAAGGGGTGGCGCAGTGGTTGAATGTATACTCCCCTCAAGGTCATACGTTCGAGACTTGTGACATTAATTTGTAGACACCTCCCGTGTCTATATTTCTTCAATGTCTTCGGTGTCTGACCTAAGGATGGGCATGGTTACCTCGGGTATAGTGCAGCAAAGCTCTGATTTCCAGGTCTGCAAAGAAAAAAAAAAAGAATCCTAGACACAATGGAGTTTGGTTGTCTCTTTTCTTACATTAAATATAGGTCATTTATGTGCCCTAGTGGTCGAAGAGAGCCTTGGAGTGCTAAAGTTGATGGGTTTAATCCATGGTGACCACCTACAAAAAAATTAATTTCCTACGAGTTTCCTTGACATCCGAATGTTGTAGGGTCAGACGGTATGTCCTGTTACATTAGTTGAGGTGCACACAAGTTGGCCCAGACAGTCACAGATATAAAAAGAAAAAAAGAAATATATATATATATATATATCATTTGTAAATATGTATTTTTATCAAATTTTATCTCAAACTCTTATTATATTCATGCCTATTTTTTTTGCAAGCAAACAGTTATAGAAGCTAAACCATTTTCCCAACTATGATTTATTTTCATCATGGATGAGCACGAGTAATCAATCATCCTTTATTATTGATAGGAAGCTCTGAGAACATTATGGGATGCTGCTTTTCCAAATATTGAGCTTAAAGGGTTGATATCTGAGCAATGGAAAGAAATGGGCTGGCAAGGTTGTAATCCATCAACTGACTTTAGGTACAGTCCAAGCCAACATTTCAATGAAGTTTCTAATCCATCTTACCTCTTATTGATTGATAGTGATAGGGAACTAGATGTTGGATCTTAAGATTTAGTTTGTTGAGAGAAAATGTTCATATGTTGATATTTAAAATTTTTTTCTCACAGTGGGCTGCTTTCTTAGGGGCTGCGGTTTAATTTCGCTTGAAAATTTGCTGTTTTTTTCTAGGACGTTTCCGGTAAGTCATATTCTCCCTGTCTCACTCCCAACAAAGAAATATCCCAGTTTAATTATTCTATCTTTTGCTCTCTTATTTTCCTAATGCTTTTCAATGTTATCACTAATCACATACAAATTCAAAATGAAGGCATCTTTTCGTAGGTTATTGTTTAAGGAAGATGGTAATCGATCTACTTGGGAATATCCGTTTGCTGTTGCTGGCATAAATGTATCATTTATGTTGATTCAAATGTTGGATCTAAAGTCAGGTATTCATTTGGTTTATTGGTTTACTGTTTTTTTTTTTCAATTTTGTATAAAGGCATCATTTATGAAGTATTGTTGATTCAAATGTTCGGTTTACGATCCAATTTCATGTAATCTAGACGTCTTATTTCCCGCCATCCTCTTCATGGACTATCCACACATTATGAACCTCCCTTGAACTGAATAAGATTCATTTGCATGCTGTATTTCAGTTGCCGGTCCTTTATTTGCTTTAAAATTGGCCATAGGTTTCTTAGGATGGATGACCGGACGCGACCACCTACCTAGGAAATAATTTCTTACGAGTTTTCTTGACATTCGAATGTTGTAGGATTAGACGGTATTAGATGGTATCTCCCGTGAGTAGTCGAGGTGTGGGTCAGTTGGTTTACACTCACGAATATCCAAAAAAAGACCATAGGTTTCCATTTAGAATGTTGATGATCACTGATCCCTGCAGGTCTTGACATTTATGAATCCAACTTAATATTTTTCCTCATTAACCAC TTACAGTTGGGTCTGCTTTTTTTCCCCACTCTCTATCTTTGTTTCTATGTGTTTTAAATTTAGAGAGGAATGAATTATGCATGAGAGCATGATTTTGGTGCTATATTTGTGGTCCATTCCTTTAGAATTTGTGTTTTTATATTCTCTTGGAGTTAAAGAAACGATTGGCATTCATGATTGAATTTGGTTTCTTAATGAGATTGAGGAGGAGAAGACAATGCTTTCCATCTTGCTCTTCCCTCAAAGAAGTCGATGAAGATGAAATATATTGGAGACAGAGAAGGGGTGACGAAGAGTTAGAATGGTCTCGTAGTTCCACCCATGTACTTTTACAGCTAGCTCAATGTTTTACTAAGGCTATGGTTGGACCGCGATCATGGATCGCAGGACTCTTCAATCGCACAGGCAACAAAAAGAATGATAAGTTTCTTAACTACACGTTGAGTTCTATTCAGGAGGAAAGGCTTCAGAGGCTACAAGACCGAATGCGTATACCTTTTGATGAGACACAACTTGATCATCAAGAAGCTCTGAGAACATTATGGGATGCTGCTTTTCCAAATATTGAGCTTAAAGGGTTGATATCTGAGCAATGGAAAGAAATGGGCTGGCAAGGTTGTAATCCATCAACTGACTTTAGGGGCTGCGGTTTAATTTCGCTTGAAAATTTGCTGTTTTTTTCTAGGACGTTTCCGGCATCTTTTCGTAGGTTATTGTTTAAGGAAGATGGTAATCGATCTACTTGGGAATATCCGTTTGCTGTTGCTGGCATAAATGTATCATTTATGTTGATTCAAATGTTGGATCTAAAGTCAGGTATTCATTTGGTTTATTGGTTTACTGTTTTTTTTTTTCAATTTTGTATAAAGGCATCATTTATGAAGTATTGTTGATTCAAATGTTCGGTTTACGATCCAATTTCATGTAATCTAGACGTCTTATTTCCCGCCATCCTCTTCATGGACTATCCACACATTATGAACCTCCCTTGAACTGAATAAGATTCATTTGCATGCTGTATTTCAGTTGCCGGTCCTTTATTTGCTTTAAAATTGGCCATAGGTTTCTTAGGATGGATGACCGGACGCGACCACCTACCTAGGAAATAATTTCTTACGAGTTTTCTTGACATTCGAATGTTGTAGGATTAGACGGTATTAGATGGTATCTCCCGTGAGTAGTCGAGGTGTGGGTCAGTTGGTTTACACTCACGAATATCCAAAAAAAGACCATAGGTTTCCATTTAGAATGTTGATGATCACTGATCCCTGCAGGTCTTGACATTTATGAATCCAACTTAATATTTTTCCTCATTAACCAC ATGATTGAATTTGGTTTCTTAATGAGATTGAGGAGGAGAAGACAATGCTTTCCATCTTGCTCTTCCCTCAAAGAAGTCGATGAAGATGAAATATATTGGAGACAGAGAAGGGGTGACGAAGAGTTAGAATGGTCTCGTAGTTCCACCCATGTACTTTTACAGCTAGCTCAATGTTTTACTAAGGCTATGGTTGGACCGCGATCATGGATCGCAGGACTCTTCAATCGCACAGGCAACAAAAAGAATGATAAGTTTCTTAACTACACGTTGAGTTCTATTCAGGAGGAAAGGCTTCAGAGGCTACAAGACCGAATGCGTATACCTTTTGATGAGACACAACTTGATCATCAAGAAGCTCTGAGAACATTATGGGATGCTGCTTTTCCAAATATTGAGCTTAAAGGGTTGATATCTGAGCAATGGAAAGAAATGGGCTGGCAAGGTTGTAATCCATCAACTGACTTTAGGGGCTGCGGTTTAATTTCGCTTGAAAATTTGCTGTTTTTTTCTAGGACGTTTCCGGCATCTTTTCGTAGGTTATTGTTTAAGGAAGATGGTAATCGATCTACTTGGGAATATCCGTTTGCTGTTGCTGGCATAAATGTATCATTTATGTTGATTCAAATGTTGGATCTAAAGTCAGGTATTCATTTGGTTTATTGGTTTACTGTTTTTTTTTTTCAATTTTGTATAAAGGCATCATTTATGAAGTATTGTTGA MIEFGFLMRLRRRRQCFPSCSSLKEVDEDEIYWRQRRGDEELEWSRSSTHVLLQLAQCFTKAMVGPRSWIAGLFNRTGNKKNDKFLNYTLSSIQEERLQRLQDRMRIPFDETQLDHQEALRTLWDAAFPNIELKGLISEQWKEMGWQGCNPSTDFRGCGLISLENLLFFSRTFPASFRRLLFKEDGNRSTWEYPFAVAGINVSFMLIQMLDLKSGIHLVYWFTVFFFQFCIKASFMKYC Homology
BLAST of Sed0023650.5 vs. NCBI nr
Match: XP_038900724.1 (ELMO domain-containing protein A isoform X1 [Benincasa hispida]) HSP 1 Score: 386.3 bits (991), Expect = 1.9e-103 Identity = 180/207 (86.96%), Postives = 191/207 (92.27%), Query Frame = 0
BLAST of Sed0023650.5 vs. NCBI nr
Match: XP_023534283.1 (ELMO domain-containing protein A isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 385.6 bits (989), Expect = 3.2e-103 Identity = 178/212 (83.96%), Postives = 194/212 (91.51%), Query Frame = 0
BLAST of Sed0023650.5 vs. NCBI nr
Match: XP_022947762.1 (ELMO domain-containing protein A isoform X1 [Cucurbita moschata]) HSP 1 Score: 380.2 bits (975), Expect = 1.3e-101 Identity = 177/207 (85.51%), Postives = 189/207 (91.30%), Query Frame = 0
BLAST of Sed0023650.5 vs. NCBI nr
Match: XP_011656954.1 (ELMO domain-containing protein A isoform X1 [Cucumis sativus] >KGN46754.1 hypothetical protein Csa_020921 [Cucumis sativus]) HSP 1 Score: 377.9 bits (969), Expect = 6.6e-101 Identity = 175/207 (84.54%), Postives = 191/207 (92.27%), Query Frame = 0
BLAST of Sed0023650.5 vs. NCBI nr
Match: XP_022943361.1 (ELMO domain-containing protein A-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 374.0 bits (959), Expect = 9.6e-100 Identity = 174/207 (84.06%), Postives = 190/207 (91.79%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy Swiss-Prot
Match: Q54VR8 (ELMO domain-containing protein B OS=Dictyostelium discoideum OX=44689 GN=elmoB PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 2.3e-19 Identity = 41/128 (32.03%), Postives = 77/128 (60.16%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy Swiss-Prot
Match: Q54YW1 (ELMO domain-containing protein A OS=Dictyostelium discoideum OX=44689 GN=elmoA PE=1 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 6.6e-19 Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy Swiss-Prot
Match: Q8IZ81 (ELMO domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ELMOD2 PE=1 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.8e-16 Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy Swiss-Prot
Match: Q08DZ3 (ELMO domain-containing protein 2 OS=Bos taurus OX=9913 GN=ELMOD2 PE=1 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 5.2e-16 Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy Swiss-Prot
Match: Q8BGF6 (ELMO domain-containing protein 2 OS=Mus musculus OX=10090 GN=Elmod2 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 7.5e-15 Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy TrEMBL
Match: A0A6J1G7C3 (ELMO domain-containing protein A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451525 PE=4 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 6.5e-102 Identity = 177/207 (85.51%), Postives = 189/207 (91.30%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy TrEMBL
Match: A0A0A0KD30 (ELMO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G128640 PE=4 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 3.2e-101 Identity = 175/207 (84.54%), Postives = 191/207 (92.27%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy TrEMBL
Match: A0A6J1FRI0 (ELMO domain-containing protein A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448148 PE=4 SV=1) HSP 1 Score: 374.0 bits (959), Expect = 4.6e-100 Identity = 174/207 (84.06%), Postives = 190/207 (91.79%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy TrEMBL
Match: A0A6J1J7B4 (ELMO domain-containing protein A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484122 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 1.0e-99 Identity = 174/207 (84.06%), Postives = 189/207 (91.30%), Query Frame = 0
BLAST of Sed0023650.5 vs. ExPASy TrEMBL
Match: A0A5N6RC12 (ELMO domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014579 PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 2.3e-99 Identity = 170/214 (79.44%), Postives = 192/214 (89.72%), Query Frame = 0
BLAST of Sed0023650.5 vs. TAIR 10
Match: AT1G03620.1 (ELMO/CED-12 family protein ) HSP 1 Score: 240.7 bits (613), Expect = 1.2e-63 Identity = 113/183 (61.75%), Postives = 146/183 (79.78%), Query Frame = 0
BLAST of Sed0023650.5 vs. TAIR 10
Match: AT3G03610.1 (ELMO/CED-12 family protein ) HSP 1 Score: 195.3 bits (495), Expect = 5.7e-50 Identity = 96/191 (50.26%), Postives = 129/191 (67.54%), Query Frame = 0
BLAST of Sed0023650.5 vs. TAIR 10
Match: AT2G44770.1 (ELMO/CED-12 family protein ) HSP 1 Score: 174.9 bits (442), Expect = 7.9e-44 Identity = 89/156 (57.05%), Postives = 112/156 (71.79%), Query Frame = 0
BLAST of Sed0023650.5 vs. TAIR 10
Match: AT1G67400.1 (ELMO/CED-12 family protein ) HSP 1 Score: 174.5 bits (441), Expect = 1.0e-43 Identity = 77/125 (61.60%), Postives = 104/125 (83.20%), Query Frame = 0
BLAST of Sed0023650.5 vs. TAIR 10
Match: AT3G60260.1 (ELMO/CED-12 family protein ) HSP 1 Score: 174.5 bits (441), Expect = 1.0e-43 Identity = 81/128 (63.28%), Postives = 101/128 (78.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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