Sed0023490.2 (mRNA) Chayote v1

Overview


Name	Sed0023490.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	LOB domain-containing protein
Location	LG06: 4548646 .. 4549622 (+)
Sequence length	845
RNA-Seq Expression	Sed0023490.2
Synteny	Sed0023490.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTAAGCAATAATCTCATATTTAAACCATGATTTCTGGTCTCTAAAATACTCCCTATCTTCTCTCTCTTTTTCTAAGACTTAATTTATTTATTTTTTCAAAATTCAGCCTGAAGTTCATCAAAGGTTCAAAATTTCCACACCCCATTTCATAAAGCTTCAAACTTCTTTTTTTTTTCTTTTTTTTTTCTTTCATAACTAGTTTTGATTATCATTTGTTTCTAATTCTTTAAATTAAACTTTTCTTTTCTTTTGTAGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAAAAATTTTCCATTTGATCATATCATTATAATTTGGTCATCACATGGGGTTTTCAATATGTTGATATGGGTGTGAAATTTATGTATTTTGATCAATAAATATAAGTGATAATTACAAACCACACCTTTTCCATTCATCTAGTTTGTAAAAATTATATCTTTATGTTACAAAAATGGTTTCAAACA

mRNA sequence

AAATTTAAGCAATAATCTCATATTTAAACCATGATTTCTGGTCTCTAAAATACTCCCTATCTTCTCTCTCTTTTTCTAAGACTTAATTTATTTATTTTTTCAAAATTCAGCCTGAAGTTCATCAAAGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAAAAATTTTCCATTTGATCATATCATTATAATTTGGTCATCACATGGGGTTTTCAATATGTTGATATGGGTGTGAAATTTATGTATTTTGATCAATAAATATAAGTGATAATTACAAACCACACCTTTTCCATTCATCTAGTTTGTAAAAATTATATCTTTATGTTACAAAAATGGTTTCAAACA

Coding sequence (CDS)

ATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA

Protein sequence

MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDKGEYK

Homology

[Close]

BLAST of Sed0023490.2 vs. NCBI nr
Match: XP_011652293.1 (LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypothetical protein Csa_001141 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 170/177 (96.05%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSEIP 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.2 vs. NCBI nr
Match: XP_004141196.1 (LOB domain-containing protein 25 isoform X1 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 170/177 (96.05%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSEIP 
Sbjct: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 138

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 139 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 195

[Close]

BLAST of Sed0023490.2 vs. NCBI nr
Match: XP_008443563.1 (PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa] >TYK00802.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.5e-89
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.2 vs. NCBI nr
Match: XP_038905774.1 (LOB domain-containing protein 25-like [Benincasa hispida])

HSP 1 Score: 337.8 bits (865), Expect = 5.6e-89
Identity = 169/177 (95.48%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 16  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSEIP 
Sbjct: 76  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 135

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 177
           PSPSSSSQYAR+SSSTSHE +SSTSSYGHYYSG YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 136 PSPSSSSQYARKSSSTSHEASSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK 192

[Close]

BLAST of Sed0023490.2 vs. NCBI nr
Match: XP_022935530.1 (LOB domain-containing protein 25-like [Cucurbita moschata])

HSP 1 Score: 335.1 bits (858), Expect = 3.6e-88
Identity = 166/177 (93.79%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQR+DAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYAC+EIP 
Sbjct: 61  HQRDDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACTEIPA 120

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNH-GPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSH+G+SSTSSYGHYYS PYFSPWSN+H G CGDGHDK E+K
Sbjct: 121 PSPSSSSQYARRSSSTSHDGSSSTSSYGHYYSNPYFSPWSNSHNGSCGDGHDKAEFK 177

[Close]

BLAST of Sed0023490.2 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 201.8 bits (512), Expect = 6.3e-51
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 4   STYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQR 63
           S Y+NSPCAACKFLRRKC  DCVFAPYFPPEEP KFANVH+IFGASNVSK+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYA 115
           EDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+EL+ TNA+L+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Sed0023490.2 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.5e-47
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 2   SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 61
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 121
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 168
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.2 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-39
Identity = 88/171 (51.46%), Postives = 114/171 (66.67%), Query Frame = 0


Query: 3   SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQ 62
           +S+ +NSPCAACKFLRRKC P+CVFAPYFPP++PQKFANVHK+FGASNV+KLLNE+ P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 63  REDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPS 122
           REDAVNSLAYEA+ R++DPVYGCVG IS+LQ Q+ +LQ +L    + L +Y    I   +
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGI-LAA 121

Query: 123 PSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDKG 174
              S      + +     T+    Y H+   P    +     P G+ +D G
Sbjct: 122 THQSLGINLLAGAADGTATAVRDHYHHHQFFPREQMFGGLDVPAGNNYDGG 171

[Close]

BLAST of Sed0023490.2 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-39
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 7   SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 66
           + SPCAACKFLRRKC PDCVFAPYFPP+ PQKF +VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 67  VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSS 126
           VNSLAYEA+ R++DPVYGCV  ISILQR + +LQ++L      L +Y  +     + S+S
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASAS 154

Query: 127 S 128
           +
Sbjct: 155 T 155

[Close]

BLAST of Sed0023490.2 vs. ExPASy Swiss-Prot
Match: Q8LQH4 (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-39
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 7   SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 66
           + SPCAACKFLRRKC PDCVFAPYFPP+ PQKF +VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 67  VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSS 126
           VNSLAYEA+ R++DPVYGCV  ISILQR + +LQ++L      L +Y  +     + S+S
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASAS 154

Query: 127 S 128
           +
Sbjct: 155 T 155

[Close]

BLAST of Sed0023490.2 vs. ExPASy TrEMBL
Match: A0A0A0LI15 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.5e-90
Identity = 170/177 (96.05%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 30  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 89

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSEIP 
Sbjct: 90  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 149

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 150 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 206

[Close]

BLAST of Sed0023490.2 vs. ExPASy TrEMBL
Match: A0A5D3BPW0 (LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00030 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.2 vs. ExPASy TrEMBL
Match: A0A1S3B938 (LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.2 vs. ExPASy TrEMBL
Match: A0A6J1DD95 (LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC111019975 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 169/179 (94.41%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           M+SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 15  MASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 74

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEI-- 120
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYAC+EI  
Sbjct: 75  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACNEIPA 134

Query: 121 PTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDK-GEYK 177
           P+PSPSSSSQYARRSSST+HEG+SSTSSYGHYYSG YFSPWSNN+GPCGDGHDK GEYK
Sbjct: 135 PSPSPSSSSQYARRSSSTNHEGSSSTSSYGHYYSGLYFSPWSNNNGPCGDGHDKGGEYK 193

[Close]

BLAST of Sed0023490.2 vs. ExPASy TrEMBL
Match: A0A6J1FAW3 (LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442374 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 166/177 (93.79%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 120
           HQR+DAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYAC+EIP 
Sbjct: 61  HQRDDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACTEIPA 120

Query: 121 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNH-GPCGDGHDKGEYK 177
           PSPSSSSQYARRSSSTSH+G+SSTSSYGHYYS PYFSPWSN+H G CGDGHDK E+K
Sbjct: 121 PSPSSSSQYARRSSSTSHDGSSSTSSYGHYYSNPYFSPWSNSHNGSCGDGHDKAEFK 177

[Close]

BLAST of Sed0023490.2 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 201.8 bits (512), Expect = 4.5e-52
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 4   STYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQR 63
           S Y+NSPCAACKFLRRKC  DCVFAPYFPPEEP KFANVH+IFGASNVSK+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYA 115
           EDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+EL+ TNA+L+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Sed0023490.2 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 2   SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 61
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 121
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 168
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.2 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 2   SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 61
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 121
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 168
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.2 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 2   SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 61
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 121
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 168
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.2 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.9e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 2   SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 61
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 121
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 122 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 168
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

The following BLAST results are available for this feature:

BLAST of Sed0023490.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652293.1	1.1e-89	96.05	LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypo...	[more]
XP_004141196.1	1.1e-89	96.05	LOB domain-containing protein 25 isoform X1 [Cucumis sativus]	[more]
XP_008443563.1	2.5e-89	95.48	PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LO...	[more]
XP_038905774.1	5.6e-89	95.48	LOB domain-containing protein 25-like [Benincasa hispida]	[more]
XP_022935530.1	3.6e-88	93.79	LOB domain-containing protein 25-like [Cucurbita moschata]	[more]

BLAST of Sed0023490.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8Q3	6.3e-51	83.78	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
Q9FML4	5.5e-47	59.67	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
O04479	1.9e-39	51.46	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
A2WXT0	3.2e-39	62.81	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]
Q8LQH4	3.2e-39	62.81	LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6...	[more]

BLAST of Sed0023490.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI15	5.5e-90	96.05	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV...	[more]
A0A5D3BPW0	1.2e-89	95.48	LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B938	1.2e-89	95.48	LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE...	[more]
A0A6J1DD95	1.8e-88	94.41	LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1FAW3	1.8e-88	93.79	LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442...	[more]

BLAST of Sed0023490.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27650.1	4.5e-52	83.78	LOB domain-containing protein 25	[more]
AT5G63090.2	3.9e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	3.9e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	3.9e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	3.9e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..145
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..168
None	No IPR available	PANTHER	PTHR31301:SF12	LOB DOMAIN-CONTAINING PROTEIN 25	coord: 1..168
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..106 e-value: 2.4E-42 score: 143.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..110 score: 27.569071

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0023490	Sed0023490	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.2-five_prime_utr	Sed0023490.2-five_prime_utr-LG06:4548646..4548772	five_prime_UTR
Sed0023490.2-five_prime_utr	Sed0023490.2-five_prime_utr-LG06:4548905..4548908	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.2-exon	Sed0023490.2-exon-LG06:4548646..4548772	exon
Sed0023490.2-exon	Sed0023490.2-exon-LG06:4548905..4549622	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.2-cds	Sed0023490.2-cds-LG06:4548909..4549439	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.2-three_prime_utr	Sed0023490.2-three_prime_utr-LG06:4549440..4549622	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0023490.2	Sed0023490.2-protein	polypeptide