Sed0023490.1 (mRNA) Chayote v1

Overview


Name	Sed0023490.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	LOB domain-containing protein
Location	LG06: 4546939 .. 4549622 (+)
Sequence length	978
RNA-Seq Expression	Sed0023490.1
Synteny	Sed0023490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTTTACCCTTTTGAAATGAGCACTGTTTAAGCAGGTTTTCTCTCTTCTCTTTATATCACCAATTAGGGTTTTTCTTTCTCTCTCTCACATGTTACATTATTTAGGAATATCCCATAAATAAAGTTTGTTCCTTTTTTTTCTCTCTCCCCCATTTCTCTCTCTACATGGCTTCAACTTCATTTTCCTTCAAATTTTCATACAAGAGATGTTGAATCAACTGCTTACACAAAGGAAGGAAAGGGAAAAAAGTTATTGGTAAATAACCCTTTTAATTTTTTTTTCCACTCTCTAAAATATATTTTTTTTCTCATCATCATCTCCTTTTCTTTCTAGATCTCATAAATTTACAAATTGGGTGTTTTTTTGTGGAATTTCTTTGTAATTGTTTGATTATGAGAATTGAAATAGTTTTGGTTTGATCTAATATGTGTAAGAGAGAGAGAGAGAGAGGGGGGTTTTGTTGGTGGGTGTGGAAGATTATAGGGCAGAGGGACCTTTTAGATTTTATGGAAGAGAAGGGAAACCATTTTTTTTTTAAATACTCAATTTTGTTTTTGATGAAAGCTAAATTAAAGTTTTGTGTAGGAGAGAGAAAATAGAGGGAGACAAAGAGGTAAGGGAGGAGAGAGAAATTAGGGCCATTTTTTTTTTATTTAGGGACAAGAAACATGCATTGAGGGCTATGCCCTTTGCTTTGATTCAATTAGGAAGGGCAGTGACCTTCTACCAAATTTTATAGAAAACCCTCAACTTTCAACAGGAAATTAAAACCTATCTTTTTTTCTCTCTCAAATTCTCAAAGTATCATGTTTAAAGACCAATATTAAAATTATTATTGCAAGTTATCCTTAGTTTTTCAATTTTGTGGTCATAAGGTTTTATATATGGAGAGAAGAATTCAAAATTACTCAAAGAGTGGATAAAACCTTGATTTCAAAATTGAGAAACCTATATTTGATATGTGAGTGTTAGACCAATTTATACGCATATCGATTATTTTCTTAATAGATGAATATTATGAATTGAATTCATAATCTTTGAACACTTTATGATATAGTGTATACTAACAGTTAGGAAACGATTAGTCTCTTTATATGTCTTTCCATAGTGATATGTTGTTGTCTACTTTGAGGCTAACGATTCGTGGCTAACTTTATATTTAGATTCACATGATCAAAAGACTTGATAATATACCTTATGATATGTATATATATTATTTTTTTACTTATAATACTATAATCTTCTCCATTTTTAACTGGAGGCTAATGACTTGTAGCTTTGTATGCTTCTTGCATACTTTTTAAAAAGAATTATCGTATCTATTTCAATTTTTTTCTTAATCGTATTCTCAACATTGCATAAATTTAAGTATCTATGATGTACTCTGCGCATATCAAACACAAGTTTATTACAAATTAAACTTTCAAACCTTATTCCAAACAAACCCGGATGAAACAACAACCCGACCCGATCCAAAAAGATCCTATACATGTATAAGAAATACACTAAAAGGTATCAAAATGCAAAAAAAATTAAAAAAAAAAAAAAGAGAAGAAATCCTCAATGGTAAGAAAGACGGCTCTGACAAGAGACCAAAAAAAAGGCACAAAATTTAGGTTGTCGCATAGCTGTAAGAATAGAATTCAGCAGTGTTTTTGTATGTGTTTTTTTTCAGCAATAACCTTTTTTTTTTTTTTTTTTTAAATTTAAGCAATAATCTCATATTTAAACCATGATTTCTGGTCTCTAAAATACTCCCTATCTTCTCTCTCTTTTTCTAAGACTTAATTTATTTATTTTTTCAAAATTCAGCCTGAAGTTCATCAAAGGTTCAAAATTTCCACACCCCATTTCATAAAGCTTCAAACTTCTTTTTTTTTTCTTTTTTTTTTCTTTCATAACTAGTTTTGATTATCATTTGTTTCTAATTCTTTAAATTAAACTTTTCTTTTCTTTTGTAGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAAAAATTTTCCATTTGATCATATCATTATAATTTGGTCATCACATGGGGTTTTCAATATGTTGATATGGGTGTGAAATTTATGTATTTTGATCAATAAATATAAGTGATAATTACAAACCACACCTTTTCCATTCATCTAGTTTGTAAAAATTATATCTTTATGTTACAAAAATGGTTTCAAACA

mRNA sequence

TCTCTCTTTACCCTTTTGAAATGAGCACTGTTTAAGCAGGTTTTCTCTCTTCTCTTTATATCACCAATTAGGGTTTTTCTTTCTCTCTCTCACATGTTACATTATTTAGGAATATCCCATAAATAAAGTTTGTTCCTTTTTTTTCTCTCTCCCCCATTTCTCTCTCTACATGGCTTCAACTTCATTTTCCTTCAAATTTTCATACAAGAGATGTTGAATCAACTGCTTACACAAAGGAAGGAAAGGGAAAAAAGTTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAAAAATTTTCCATTTGATCATATCATTATAATTTGGTCATCACATGGGGTTTTCAATATGTTGATATGGGTGTGAAATTTATGTATTTTGATCAATAAATATAAGTGATAATTACAAACCACACCTTTTCCATTCATCTAGTTTGTAAAAATTATATCTTTATGTTACAAAAATGGTTTCAAACA

Coding sequence (CDS)

ATGTTGAATCAACTGCTTACACAAAGGAAGGAAAGGGAAAAAAGTTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTTCGGCGTAAATGCCTTCCCGATTGCGTTTTTGCACCGTATTTCCCTCCCGAGGAGCCACAAAAGTTCGCCAACGTTCACAAGATATTCGGTGCCAGCAATGTCAGCAAACTGCTCAATGAAGTCCAGCCGCATCAGCGGGAGGATGCTGTGAACTCGCTCGCCTATGAGGCCGAGGCGAGGATGAAAGACCCCGTTTATGGCTGTGTTGGCGCAATCTCCATCCTCCAAAGGCAAGTCATCAAGCTACAGAAAGAACTCGACGCCACGAACGCCAACCTCATTCGCTATGCCTGCAGTGAAATTCCCACACCGTCCCCATCCTCGTCGTCACAATATGCTCGAAGATCATCGTCGACGAGCCACGAGGGAACCTCATCTACCTCTAGTTATGGGCACTATTATTCTGGCCCCTACTTTTCTCCATGGAGTAACAACCATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA

Protein sequence

MLNQLLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDKGEYK

Homology

[Close]

BLAST of Sed0023490.1 vs. NCBI nr
Match: XP_004141196.1 (LOB domain-containing protein 25 isoform X1 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 6.1e-97
Identity = 182/195 (93.33%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MLNQLLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60
           ML Q LT+R+ER K+YWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV
Sbjct: 1   MLKQQLTERRERGKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60

Query: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120
           HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE
Sbjct: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120

Query: 121 LDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-N 180
           LDATNA+LIRYACSEIP PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS N
Sbjct: 121 LDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNN 180

Query: 181 NHGPCGDGHDKGEYK 195
           N+GPCGDGHDKGEYK
Sbjct: 181 NNGPCGDGHDKGEYK 195

[Close]

BLAST of Sed0023490.1 vs. NCBI nr
Match: XP_038905774.1 (LOB domain-containing protein 25-like [Benincasa hispida])

HSP 1 Score: 354.8 bits (909), Expect = 4.9e-94
Identity = 180/195 (92.31%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MLNQLLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60
           ML Q LT   ER K+YWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV
Sbjct: 1   MLKQQLT---ERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60

Query: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120
           HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE
Sbjct: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120

Query: 121 LDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-N 180
           LDATNA+LIRYACSEIP PSPSSSSQYAR+SSSTSHE +SSTSSYGHYYSG YFSPWS N
Sbjct: 121 LDATNADLIRYACSEIPAPSPSSSSQYARKSSSTSHEASSSTSSYGHYYSGLYFSPWSNN 180

Query: 181 NHGPCGDGHDKGEYK 195
           N+GPCGDGHDKGEYK
Sbjct: 181 NNGPCGDGHDKGEYK 192

[Close]

BLAST of Sed0023490.1 vs. NCBI nr
Match: XP_022152200.1 (LOB domain-containing protein 25-like [Momordica charantia])

HSP 1 Score: 351.7 bits (901), Expect = 4.1e-93
Identity = 177/193 (91.71%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 5   LLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIF 64
           +L Q  ER K+YWKM+SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIF
Sbjct: 1   MLKQLTERRKNYWKMASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIF 60

Query: 65  GASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDAT 124
           GASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDAT
Sbjct: 61  GASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDAT 120

Query: 125 NANLIRYACSEI--PTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHG 184
           NANLIRYAC+EI  P+PSPSSSSQYARRSSST+HEG+SSTSSYGHYYSG YFSPWSNN+G
Sbjct: 121 NANLIRYACNEIPAPSPSPSSSSQYARRSSSTNHEGSSSTSSYGHYYSGLYFSPWSNNNG 180

Query: 185 PCGDGHDK-GEYK 195
           PCGDGHDK GEYK
Sbjct: 181 PCGDGHDKGGEYK 193

[Close]

BLAST of Sed0023490.1 vs. NCBI nr
Match: XP_011652293.1 (LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypothetical protein Csa_001141 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 9.5e-90
Identity = 170/177 (96.05%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 138
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSEIP 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120

Query: 139 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 195
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.1 vs. NCBI nr
Match: XP_008443563.1 (PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa] >TYK00802.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa])

HSP 1 Score: 339.3 bits (869), Expect = 2.1e-89
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 138
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 139 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 195
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.1 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-51
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 22  STYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQR 81
           S Y+NSPCAACKFLRRKC  DCVFAPYFPPEEP KFANVH+IFGASNVSK+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 82  EDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYA 133
           EDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+EL+ TNA+L+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Sed0023490.1 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.6e-47
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 20  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 79
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 80  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 139
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 140 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 186
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.1 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.1e-39
Identity = 88/171 (51.46%), Postives = 114/171 (66.67%), Query Frame = 0


Query: 21  SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQ 80
           +S+ +NSPCAACKFLRRKC P+CVFAPYFPP++PQKFANVHK+FGASNV+KLLNE+ P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 81  REDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPS 140
           REDAVNSLAYEA+ R++DPVYGCVG IS+LQ Q+ +LQ +L    + L +Y    I   +
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGI-LAA 121

Query: 141 PSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHGPCGDGHDKG 192
              S      + +     T+    Y H+   P    +     P G+ +D G
Sbjct: 122 THQSLGINLLAGAADGTATAVRDHYHHHQFFPREQMFGGLDVPAGNNYDGG 171

[Close]

BLAST of Sed0023490.1 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.7e-39
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 25  SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 84
           + SPCAACKFLRRKC PDCVFAPYFPP+ PQKF +VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 85  VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSS 144
           VNSLAYEA+ R++DPVYGCV  ISILQR + +LQ++L      L +Y  +     + S+S
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASAS 154

Query: 145 S 146
           +
Sbjct: 155 T 155

[Close]

BLAST of Sed0023490.1 vs. ExPASy Swiss-Prot
Match: Q8LQH4 (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.7e-39
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 25  SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 84
           + SPCAACKFLRRKC PDCVFAPYFPP+ PQKF +VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 85  VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPTPSPSSS 144
           VNSLAYEA+ R++DPVYGCV  ISILQR + +LQ++L      L +Y  +     + S+S
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASAS 154

Query: 145 S 146
           +
Sbjct: 155 T 155

[Close]

BLAST of Sed0023490.1 vs. ExPASy TrEMBL
Match: A0A0A0LI15 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 182/195 (93.33%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MLNQLLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60
           ML Q LT+R+ER K+YWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV
Sbjct: 12  MLKQQLTERRERGKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 71

Query: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120
           HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE
Sbjct: 72  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 131

Query: 121 LDATNANLIRYACSEIPTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-N 180
           LDATNA+LIRYACSEIP PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS N
Sbjct: 132 LDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNN 191

Query: 181 NHGPCGDGHDKGEYK 195
           N+GPCGDGHDKGEYK
Sbjct: 192 NNGPCGDGHDKGEYK 206

[Close]

BLAST of Sed0023490.1 vs. ExPASy TrEMBL
Match: A0A6J1DD95 (LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC111019975 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.0e-93
Identity = 177/193 (91.71%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 5   LLTQRKEREKSYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIF 64
           +L Q  ER K+YWKM+SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIF
Sbjct: 1   MLKQLTERRKNYWKMASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIF 60

Query: 65  GASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDAT 124
           GASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDAT
Sbjct: 61  GASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDAT 120

Query: 125 NANLIRYACSEI--PTPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNHG 184
           NANLIRYAC+EI  P+PSPSSSSQYARRSSST+HEG+SSTSSYGHYYSG YFSPWSNN+G
Sbjct: 121 NANLIRYACNEIPAPSPSPSSSSQYARRSSSTNHEGSSSTSSYGHYYSGLYFSPWSNNNG 180

Query: 185 PCGDGHDK-GEYK 195
           PCGDGHDK GEYK
Sbjct: 181 PCGDGHDKGGEYK 193

[Close]

BLAST of Sed0023490.1 vs. ExPASy TrEMBL
Match: A0A5D3BPW0 (LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00030 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.0e-89
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 138
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 139 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 195
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.1 vs. ExPASy TrEMBL
Match: A0A1S3B938 (LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.0e-89
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 138
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 139 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWS-NNHGPCGDGHDKGEYK 195
           PSPSSSSQYARRSSSTSHEG+SSTSSYGHYY+G YFSPWS NN+GPCGDGHDKGEYK
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGHDKGEYK 177

[Close]

BLAST of Sed0023490.1 vs. ExPASy TrEMBL
Match: A0A6J1FAW3 (LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442374 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 166/177 (93.79%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPT 138
           HQR+DAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYAC+EIP 
Sbjct: 61  HQRDDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACTEIPA 120

Query: 139 PSPSSSSQYARRSSSTSHEGTSSTSSYGHYYSGPYFSPWSNNH-GPCGDGHDKGEYK 195
           PSPSSSSQYARRSSSTSH+G+SSTSSYGHYYS PYFSPWSN+H G CGDGHDK E+K
Sbjct: 121 PSPSSSSQYARRSSSTSHDGSSSTSSYGHYYSNPYFSPWSNSHNGSCGDGHDKAEFK 177

[Close]

BLAST of Sed0023490.1 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 202.2 bits (513), Expect = 3.8e-52
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 22  STYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQR 81
           S Y+NSPCAACKFLRRKC  DCVFAPYFPPEEP KFANVH+IFGASNVSK+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 82  EDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYA 133
           EDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+EL+ TNA+L+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Sed0023490.1 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 20  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 79
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 80  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 139
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 140 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 186
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.1 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 20  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 79
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 80  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 139
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 140 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 186
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.1 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 20  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 79
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 80  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 139
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 140 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 186
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

[Close]

BLAST of Sed0023490.1 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-48
Identity = 108/181 (59.67%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 20  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 79
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 80  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSE---- 139
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NA+L  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 140 --------IPTPSPSSSSQYARRSSSTSHEGTSSTSSY---GHYYSGPYFSPWSNNHGPC 186
                   +  P P  S Q    +      G S   +    G   S   F PW+N H   
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWNNGHDQQ 182

The following BLAST results are available for this feature:

BLAST of Sed0023490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141196.1	6.1e-97	93.33	LOB domain-containing protein 25 isoform X1 [Cucumis sativus]	[more]
XP_038905774.1	4.9e-94	92.31	LOB domain-containing protein 25-like [Benincasa hispida]	[more]
XP_022152200.1	4.1e-93	91.71	LOB domain-containing protein 25-like [Momordica charantia]	[more]
XP_011652293.1	9.5e-90	96.05	LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypo...	[more]
XP_008443563.1	2.1e-89	95.48	PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LO...	[more]

BLAST of Sed0023490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8Q3	5.3e-51	83.78	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
Q9FML4	4.6e-47	59.67	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
O04479	2.1e-39	51.46	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
A2WXT0	2.7e-39	62.81	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]
Q8LQH4	2.7e-39	62.81	LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6...	[more]

BLAST of Sed0023490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI15	3.0e-97	93.33	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV...	[more]
A0A6J1DD95	2.0e-93	91.71	LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A5D3BPW0	1.0e-89	95.48	LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B938	1.0e-89	95.48	LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE...	[more]
A0A6J1FAW3	1.5e-88	93.79	LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442...	[more]

BLAST of Sed0023490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27650.1	3.8e-52	83.78	LOB domain-containing protein 25	[more]
AT5G63090.2	3.3e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	3.3e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	3.3e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	3.3e-48	59.67	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..163
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 19..186
None	No IPR available	PANTHER	PTHR31301:SF12	LOB DOMAIN-CONTAINING PROTEIN 25	coord: 19..186
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 28..124 e-value: 3.1E-42 score: 143.2
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 27..128 score: 27.569071

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0023490	Sed0023490	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.1-five_prime_utr	Sed0023490.1-five_prime_utr-LG06:4546939..4547148	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.1-exon	Sed0023490.1-exon-LG06:4546939..4547198	exon
Sed0023490.1-exon	Sed0023490.1-exon-LG06:4548905..4549622	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.1-cds	Sed0023490.1-cds-LG06:4547149..4547198	CDS
Sed0023490.1-cds	Sed0023490.1-cds-LG06:4548905..4549439	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023490.1-three_prime_utr	Sed0023490.1-three_prime_utr-LG06:4549440..4549622	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0023490.1	Sed0023490.1-protein	polypeptide