Sed0023235.1 (mRNA) Chayote v1

Overview


Name	Sed0023235.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Hydroxymethylbilane hydrolyase [cyclizing]
Location	LG12: 33247165 .. 33248097 (+)
Sequence length	933
RNA-Seq Expression	Sed0023235.1
Synteny	Sed0023235.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGAAAAATGAGCACCGGCGCCGGCGCCGGCCACATAAATGCACTAACTTCATCTTCTCCGGCCATTCCCAGCCACTCCCCTCCGCGTACGGCGGCGTTCACGACGCCTGAGAACTACGCCGGCAGCCTCTCCCGCCTCCTCTCTCTCAAAGGCTTCGAACCCCTCTGGATCCCCACCCTCACCGTCCACTCCACTCCCCTCGCCGTCAAACCCCATGTCCTTCCCCCAAATCTCTACTCCTTCTCCGCCGTCGCCTTCACCTCCCGCTCCGGCATCGCAACACTCCTCGACGCCGCGGCCGAAATCGCCAAACCCTTGCTGCCGCCTCGAGGCGACGATTTCCTAATCGCAGCCCTAGGTAAGGACTCTGAACTTCTCGATCGTGATTTTCTCTCTAAATTTTGCCCTAACGAGAGTCGAATTAGAATTATAGTACCTGAAATTGCAACTCCGAGTGCTCTAGTGACGGCTCTTGGAGTTGGAAACCACCGGAGGGTTCTATGTCCGGTTCCTCGCGTTGTCGGGCTGAACGAGCCTCCGGTGGTTCCGAACTTCCTCCGCGACCTAGAGGCCAACGGGTGGATTCCGGTTCGTGTCGATGCTTACGAGACGCGATGGGCTGGACTGGATTGCGCGAGGAAGCTGGTGATGAGAGGGAAGGATGAGAAATTGGATGCCATTGTGTTTACAAGTACTGGGGAAGTTGAGGGGCTGCTTAAAAGCCTGAGAGATTTAGGATTAGATTGGGAGGTGATGAGAAGCAGATGGCCGGAGATGGTAGTGGCTGCGCACGGTCCGGTGACGGCCGCGGGAGCTGAGAGGCTCGGTGTTAAGGTTGATTTGGTGAGTTCTAAGTTTGATAGCTTCGAGGGTGTGGTTGATGCTCTTCATTTGAGATGGCAGAGCTTAGAACAGAATCATATGTAA

mRNA sequence

ATGTTTGGAAAAATGAGCACCGGCGCCGGCGCCGGCCACATAAATGCACTAACTTCATCTTCTCCGGCCATTCCCAGCCACTCCCCTCCGCGTACGGCGGCGTTCACGACGCCTGAGAACTACGCCGGCAGCCTCTCCCGCCTCCTCTCTCTCAAAGGCTTCGAACCCCTCTGGATCCCCACCCTCACCGTCCACTCCACTCCCCTCGCCGTCAAACCCCATGTCCTTCCCCCAAATCTCTACTCCTTCTCCGCCGTCGCCTTCACCTCCCGCTCCGGCATCGCAACACTCCTCGACGCCGCGGCCGAAATCGCCAAACCCTTGCTGCCGCCTCGAGGCGACGATTTCCTAATCGCAGCCCTAGGTAAGGACTCTGAACTTCTCGATCGTGATTTTCTCTCTAAATTTTGCCCTAACGAGAGTCGAATTAGAATTATAGTACCTGAAATTGCAACTCCGAGTGCTCTAGTGACGGCTCTTGGAGTTGGAAACCACCGGAGGGTTCTATGTCCGGTTCCTCGCGTTGTCGGGCTGAACGAGCCTCCGGTGGTTCCGAACTTCCTCCGCGACCTAGAGGCCAACGGGTGGATTCCGGTTCGTGTCGATGCTTACGAGACGCGATGGGCTGGACTGGATTGCGCGAGGAAGCTGGTGATGAGAGGGAAGGATGAGAAATTGGATGCCATTGTGTTTACAAGTACTGGGGAAGTTGAGGGGCTGCTTAAAAGCCTGAGAGATTTAGGATTAGATTGGGAGGTGATGAGAAGCAGATGGCCGGAGATGGTAGTGGCTGCGCACGGTCCGGTGACGGCCGCGGGAGCTGAGAGGCTCGGTGTTAAGGTTGATTTGGTGAGTTCTAAGTTTGATAGCTTCGAGGGTGTGGTTGATGCTCTTCATTTGAGATGGCAGAGCTTAGAACAGAATCATATGTAA

Coding sequence (CDS)

ATGTTTGGAAAAATGAGCACCGGCGCCGGCGCCGGCCACATAAATGCACTAACTTCATCTTCTCCGGCCATTCCCAGCCACTCCCCTCCGCGTACGGCGGCGTTCACGACGCCTGAGAACTACGCCGGCAGCCTCTCCCGCCTCCTCTCTCTCAAAGGCTTCGAACCCCTCTGGATCCCCACCCTCACCGTCCACTCCACTCCCCTCGCCGTCAAACCCCATGTCCTTCCCCCAAATCTCTACTCCTTCTCCGCCGTCGCCTTCACCTCCCGCTCCGGCATCGCAACACTCCTCGACGCCGCGGCCGAAATCGCCAAACCCTTGCTGCCGCCTCGAGGCGACGATTTCCTAATCGCAGCCCTAGGTAAGGACTCTGAACTTCTCGATCGTGATTTTCTCTCTAAATTTTGCCCTAACGAGAGTCGAATTAGAATTATAGTACCTGAAATTGCAACTCCGAGTGCTCTAGTGACGGCTCTTGGAGTTGGAAACCACCGGAGGGTTCTATGTCCGGTTCCTCGCGTTGTCGGGCTGAACGAGCCTCCGGTGGTTCCGAACTTCCTCCGCGACCTAGAGGCCAACGGGTGGATTCCGGTTCGTGTCGATGCTTACGAGACGCGATGGGCTGGACTGGATTGCGCGAGGAAGCTGGTGATGAGAGGGAAGGATGAGAAATTGGATGCCATTGTGTTTACAAGTACTGGGGAAGTTGAGGGGCTGCTTAAAAGCCTGAGAGATTTAGGATTAGATTGGGAGGTGATGAGAAGCAGATGGCCGGAGATGGTAGTGGCTGCGCACGGTCCGGTGACGGCCGCGGGAGCTGAGAGGCTCGGTGTTAAGGTTGATTTGGTGAGTTCTAAGTTTGATAGCTTCGAGGGTGTGGTTGATGCTCTTCATTTGAGATGGCAGAGCTTAGAACAGAATCATATGTAA

Protein sequence

MFGKMSTGAGAGHINALTSSSPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWIPTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIAALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLNEPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEGLLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALHLRWQSLEQNHM

Homology

[Close]

BLAST of Sed0023235.1 vs. NCBI nr
Match: TYK03635.1 (Tetrapyrrole biosynthesis, uroporphyrinogen III synthase [Cucumis melo var. makuwa])

HSP 1 Score: 500.0 bits (1286), Expect = 1.5e-137
Identity = 250/307 (81.43%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 5   MSTGA----GAGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA    G  HI+ LTSS SPAIP+HS PRT AFTTP+NYAGSLS LLSLKGFEPLW 
Sbjct: 1   MSTGAAHPNGPFHISPLTSSPSPAIPTHSSPRTVAFTTPQNYAGSLSHLLSLKGFEPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PTLTV  TPLA+K H+LPP L+SFSAVAFTSRSGI  LLDAA EI +PLLP  GD FLIA
Sbjct: 61  PTLTVQPTPLAIKSHLLPPILHSFSAVAFTSRSGITALLDAATEIGEPLLPSHGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD +FL+  CPN SRIR++VPEIATP+ LV ALGVGNHRRVLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHEFLTTICPNTSRIRVVVPEIATPTGLVEALGVGNHRRVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDLEA GW+PVRVDAYETRWAG DCARKLV RGKDEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLEAKGWVPVRVDAYETRWAGPDCARKLVERGKDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSL  LGL+W++M+ RWPEMVVAAHGPVTAAGAERLGVKVDLVS KFDSF GVVD+LH
Sbjct: 241 LLKSLEHLGLEWDIMKKRWPEMVVAAHGPVTAAGAERLGVKVDLVSPKFDSFNGVVDSLH 300

Query: 305 LRWQSLE 307
            RWQSL+
Sbjct: 301 WRWQSLD 307

[Close]

BLAST of Sed0023235.1 vs. NCBI nr
Match: XP_008444040.1 (PREDICTED: uncharacterized protein LOC103487492 [Cucumis melo] >KAA0050031.1 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase [Cucumis melo var. makuwa])

HSP 1 Score: 499.2 bits (1284), Expect = 2.6e-137
Identity = 250/307 (81.43%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 5   MSTGA----GAGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA    G  HI+ LTSS SPAIP+HS PRT AFTTP+NYAGSLS LLSLKGFEPLW 
Sbjct: 1   MSTGAAHPNGPFHISPLTSSPSPAIPTHSSPRTVAFTTPQNYAGSLSHLLSLKGFEPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PTLTV  TPLA+K H+LPP L+SFSAVAFTSRSGI  LLDAA EI +PLLP  GD FLIA
Sbjct: 61  PTLTVQPTPLAIKSHLLPPILHSFSAVAFTSRSGITALLDAATEIGEPLLPSHGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD +FL+  CPN SRIR++VPEIATP+ LV ALGVGNHRRVLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHEFLTTICPNTSRIRVVVPEIATPTGLVEALGVGNHRRVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDLEA GW+PVRVDAYETRWAG DCARKLV RGKDEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLEAKGWVPVRVDAYETRWAGPDCARKLVERGKDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSL  LGL+W++M+ RWPEMVVAAHGPVTAAGAERLGVKVDLVS KFDSF GVVD+LH
Sbjct: 241 LLKSLEHLGLEWDMMKKRWPEMVVAAHGPVTAAGAERLGVKVDLVSPKFDSFNGVVDSLH 300

Query: 305 LRWQSLE 307
            RWQSL+
Sbjct: 301 WRWQSLD 307

[Close]

BLAST of Sed0023235.1 vs. NCBI nr
Match: XP_011648476.1 (uncharacterized protein LOC105434481 [Cucumis sativus] >KGN65221.1 hypothetical protein Csa_019699 [Cucumis sativus])

HSP 1 Score: 496.9 bits (1278), Expect = 1.3e-136
Identity = 251/307 (81.76%), Postives = 268/307 (87.30%), Query Frame = 0


Query: 5   MSTGA----GAGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA    G  H+N+LTSS SPAIP+H  PRTAAFTTP NYAGSLS LLSLKGFEPLW 
Sbjct: 1   MSTGAAHPNGPFHLNSLTSSPSPAIPTHFSPRTAAFTTPPNYAGSLSHLLSLKGFEPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PTLTV  TPLA+K H+LPP L+SFSAVAFTSRSGI  LLDAA EI +PLLP  GD FLIA
Sbjct: 61  PTLTVQPTPLAIKSHLLPPILHSFSAVAFTSRSGITALLDAATEIGEPLLPSHGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD +FL+  C N SRIR++VPEIATP+ LV ALGVGNHR VLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHEFLTTICHNTSRIRVVVPEIATPTGLVEALGVGNHRSVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDLEA GW+PVRVDAYETRWAG DCARKLV RGKDEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLEAKGWVPVRVDAYETRWAGPDCARKLVERGKDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSL  LGL+W+VM+ RWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSF GVVDALH
Sbjct: 241 LLKSLAHLGLEWDVMKRRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFNGVVDALH 300

Query: 305 LRWQSLE 307
            RWQ+LE
Sbjct: 301 WRWQNLE 307

[Close]

BLAST of Sed0023235.1 vs. NCBI nr
Match: XP_023003818.1 (uncharacterized protein LOC111497286 [Cucurbita maxima])

HSP 1 Score: 496.5 bits (1277), Expect = 1.7e-136
Identity = 247/308 (80.19%), Postives = 270/308 (87.66%), Query Frame = 0


Query: 5   MSTGAGAG---HINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWIP 64
           MSTGA      H+N L SS SPAIP++SP RT AFTTP+NYAGSLS LLSLKGF+PLW P
Sbjct: 1   MSTGAAHPSLIHLNPLASSPSPAIPTNSPSRTVAFTTPQNYAGSLSNLLSLKGFDPLWCP 60

Query: 65  TLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIAA 124
           T+TVH TPLA+K H+LPPNL+ +SAVAFTSRSGI  LLDAA EI  PLL P+GD FLIAA
Sbjct: 61  TVTVHPTPLAIKSHLLPPNLHFYSAVAFTSRSGITALLDAATEIDDPLLSPQGDTFLIAA 120

Query: 125 LGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLNE 184
           LGKDSELLD   LSKFCPN SRIR++VP+IATPS LV ALG+GNHRRVLCPVPRVVGLNE
Sbjct: 121 LGKDSELLDHGVLSKFCPNTSRIRVVVPKIATPSGLVEALGIGNHRRVLCPVPRVVGLNE 180

Query: 185 PPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEGL 244
           PPVVPNFLRDL A+GW+PVRVDAYETRWAG +CAR LV RG+DEKLDAIVFTSTGEVEGL
Sbjct: 181 PPVVPNFLRDLAASGWVPVRVDAYETRWAGPECARMLVKRGEDEKLDAIVFTSTGEVEGL 240

Query: 245 LKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALHL 304
           LKSLR LGL WE+MR +WPEMV+AAHGPVTAAGAERLGVK+DLVSSKFDSF GVVDALH 
Sbjct: 241 LKSLRTLGLKWEMMRKKWPEMVLAAHGPVTAAGAERLGVKIDLVSSKFDSFNGVVDALHS 300

Query: 305 RWQSLEQN 309
           RWQSLEQN
Sbjct: 301 RWQSLEQN 308

[Close]

BLAST of Sed0023235.1 vs. NCBI nr
Match: KAG6587847.1 (hypothetical protein SDJN03_16412, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035661.1 hypothetical protein SDJN02_02459, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 494.2 bits (1271), Expect = 8.2e-136
Identity = 245/309 (79.29%), Postives = 270/309 (87.38%), Query Frame = 0


Query: 5   MSTGAG----AGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA       H+N L SS SPAIP++SP RT AFTTP+NYAGSLS LLSLKGF+PLW 
Sbjct: 1   MSTGAAHPSPIHHLNPLASSPSPAIPTNSPSRTVAFTTPQNYAGSLSNLLSLKGFDPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PT+TVH TPLA+K H+LPPNL+ +SAVAFTSRSGI  LLDAA EI +PLL P+GD FLIA
Sbjct: 61  PTVTVHPTPLAIKSHLLPPNLHFYSAVAFTSRSGITALLDAATEIDEPLLSPQGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD   LSKFCPN SRIR++VP+IA+PS LV ALG+GNHRRVLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHGVLSKFCPNASRIRVVVPKIASPSGLVEALGIGNHRRVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDL A+GW+PVRVDAYETRW G +CARKL  RG+DEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLAASGWVPVRVDAYETRWVGPECARKLAERGEDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSLR LGL WE+MR +WPEMV+AAHGPVTAAGAERLGVK+DLVSSKFDSF GVVDALH
Sbjct: 241 LLKSLRALGLKWEMMRKKWPEMVLAAHGPVTAAGAERLGVKIDLVSSKFDSFNGVVDALH 300

Query: 305 LRWQSLEQN 309
            RWQSLEQN
Sbjct: 301 SRWQSLEQN 309

[Close]

BLAST of Sed0023235.1 vs. ExPASy TrEMBL
Match: A0A5D3BX13 (Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00630 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 7.3e-138
Identity = 250/307 (81.43%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 5   MSTGA----GAGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA    G  HI+ LTSS SPAIP+HS PRT AFTTP+NYAGSLS LLSLKGFEPLW 
Sbjct: 1   MSTGAAHPNGPFHISPLTSSPSPAIPTHSSPRTVAFTTPQNYAGSLSHLLSLKGFEPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PTLTV  TPLA+K H+LPP L+SFSAVAFTSRSGI  LLDAA EI +PLLP  GD FLIA
Sbjct: 61  PTLTVQPTPLAIKSHLLPPILHSFSAVAFTSRSGITALLDAATEIGEPLLPSHGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD +FL+  CPN SRIR++VPEIATP+ LV ALGVGNHRRVLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHEFLTTICPNTSRIRVVVPEIATPTGLVEALGVGNHRRVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDLEA GW+PVRVDAYETRWAG DCARKLV RGKDEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLEAKGWVPVRVDAYETRWAGPDCARKLVERGKDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSL  LGL+W++M+ RWPEMVVAAHGPVTAAGAERLGVKVDLVS KFDSF GVVD+LH
Sbjct: 241 LLKSLEHLGLEWDIMKKRWPEMVVAAHGPVTAAGAERLGVKVDLVSPKFDSFNGVVDSLH 300

Query: 305 LRWQSLE 307
            RWQSL+
Sbjct: 301 WRWQSLD 307

[Close]

BLAST of Sed0023235.1 vs. ExPASy TrEMBL
Match: A0A5A7U8V3 (Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00050 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.2e-137
Identity = 250/307 (81.43%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 5   MSTGA----GAGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA    G  HI+ LTSS SPAIP+HS PRT AFTTP+NYAGSLS LLSLKGFEPLW 
Sbjct: 1   MSTGAAHPNGPFHISPLTSSPSPAIPTHSSPRTVAFTTPQNYAGSLSHLLSLKGFEPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PTLTV  TPLA+K H+LPP L+SFSAVAFTSRSGI  LLDAA EI +PLLP  GD FLIA
Sbjct: 61  PTLTVQPTPLAIKSHLLPPILHSFSAVAFTSRSGITALLDAATEIGEPLLPSHGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD +FL+  CPN SRIR++VPEIATP+ LV ALGVGNHRRVLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHEFLTTICPNTSRIRVVVPEIATPTGLVEALGVGNHRRVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDLEA GW+PVRVDAYETRWAG DCARKLV RGKDEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLEAKGWVPVRVDAYETRWAGPDCARKLVERGKDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSL  LGL+W++M+ RWPEMVVAAHGPVTAAGAERLGVKVDLVS KFDSF GVVD+LH
Sbjct: 241 LLKSLEHLGLEWDMMKKRWPEMVVAAHGPVTAAGAERLGVKVDLVSPKFDSFNGVVDSLH 300

Query: 305 LRWQSLE 307
            RWQSL+
Sbjct: 301 WRWQSLD 307

[Close]

BLAST of Sed0023235.1 vs. ExPASy TrEMBL
Match: A0A1S3BA78 (Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis melo OX=3656 GN=LOC103487492 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.2e-137
Identity = 250/307 (81.43%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 5   MSTGA----GAGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA    G  HI+ LTSS SPAIP+HS PRT AFTTP+NYAGSLS LLSLKGFEPLW 
Sbjct: 1   MSTGAAHPNGPFHISPLTSSPSPAIPTHSSPRTVAFTTPQNYAGSLSHLLSLKGFEPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PTLTV  TPLA+K H+LPP L+SFSAVAFTSRSGI  LLDAA EI +PLLP  GD FLIA
Sbjct: 61  PTLTVQPTPLAIKSHLLPPILHSFSAVAFTSRSGITALLDAATEIGEPLLPSHGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD +FL+  CPN SRIR++VPEIATP+ LV ALGVGNHRRVLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHEFLTTICPNTSRIRVVVPEIATPTGLVEALGVGNHRRVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDLEA GW+PVRVDAYETRWAG DCARKLV RGKDEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLEAKGWVPVRVDAYETRWAGPDCARKLVERGKDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSL  LGL+W++M+ RWPEMVVAAHGPVTAAGAERLGVKVDLVS KFDSF GVVD+LH
Sbjct: 241 LLKSLEHLGLEWDMMKKRWPEMVVAAHGPVTAAGAERLGVKVDLVSPKFDSFNGVVDSLH 300

Query: 305 LRWQSLE 307
            RWQSL+
Sbjct: 301 WRWQSLD 307

[Close]

BLAST of Sed0023235.1 vs. ExPASy TrEMBL
Match: A0A0A0LZ08 (Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis sativus OX=3659 GN=Csa_1G266180 PE=3 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 6.1e-137
Identity = 251/307 (81.76%), Postives = 268/307 (87.30%), Query Frame = 0


Query: 5   MSTGA----GAGHINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWI 64
           MSTGA    G  H+N+LTSS SPAIP+H  PRTAAFTTP NYAGSLS LLSLKGFEPLW 
Sbjct: 1   MSTGAAHPNGPFHLNSLTSSPSPAIPTHFSPRTAAFTTPPNYAGSLSHLLSLKGFEPLWC 60

Query: 65  PTLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIA 124
           PTLTV  TPLA+K H+LPP L+SFSAVAFTSRSGI  LLDAA EI +PLLP  GD FLIA
Sbjct: 61  PTLTVQPTPLAIKSHLLPPILHSFSAVAFTSRSGITALLDAATEIGEPLLPSHGDTFLIA 120

Query: 125 ALGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLN 184
           ALGKDSELLD +FL+  C N SRIR++VPEIATP+ LV ALGVGNHR VLCPVPRVVGLN
Sbjct: 121 ALGKDSELLDHEFLTTICHNTSRIRVVVPEIATPTGLVEALGVGNHRSVLCPVPRVVGLN 180

Query: 185 EPPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEG 244
           EPPVVPNFLRDLEA GW+PVRVDAYETRWAG DCARKLV RGKDEKLDAIVFTSTGEVEG
Sbjct: 181 EPPVVPNFLRDLEAKGWVPVRVDAYETRWAGPDCARKLVERGKDEKLDAIVFTSTGEVEG 240

Query: 245 LLKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALH 304
           LLKSL  LGL+W+VM+ RWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSF GVVDALH
Sbjct: 241 LLKSLAHLGLEWDVMKRRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFNGVVDALH 300

Query: 305 LRWQSLE 307
            RWQ+LE
Sbjct: 301 WRWQNLE 307

[Close]

BLAST of Sed0023235.1 vs. ExPASy TrEMBL
Match: A0A6J1KXQ2 (Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucurbita maxima OX=3661 GN=LOC111497286 PE=3 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 8.0e-137
Identity = 247/308 (80.19%), Postives = 270/308 (87.66%), Query Frame = 0


Query: 5   MSTGAGAG---HINALTSS-SPAIPSHSPPRTAAFTTPENYAGSLSRLLSLKGFEPLWIP 64
           MSTGA      H+N L SS SPAIP++SP RT AFTTP+NYAGSLS LLSLKGF+PLW P
Sbjct: 1   MSTGAAHPSLIHLNPLASSPSPAIPTNSPSRTVAFTTPQNYAGSLSNLLSLKGFDPLWCP 60

Query: 65  TLTVHSTPLAVKPHVLPPNLYSFSAVAFTSRSGIATLLDAAAEIAKPLLPPRGDDFLIAA 124
           T+TVH TPLA+K H+LPPNL+ +SAVAFTSRSGI  LLDAA EI  PLL P+GD FLIAA
Sbjct: 61  TVTVHPTPLAIKSHLLPPNLHFYSAVAFTSRSGITALLDAATEIDDPLLSPQGDTFLIAA 120

Query: 125 LGKDSELLDRDFLSKFCPNESRIRIIVPEIATPSALVTALGVGNHRRVLCPVPRVVGLNE 184
           LGKDSELLD   LSKFCPN SRIR++VP+IATPS LV ALG+GNHRRVLCPVPRVVGLNE
Sbjct: 121 LGKDSELLDHGVLSKFCPNTSRIRVVVPKIATPSGLVEALGIGNHRRVLCPVPRVVGLNE 180

Query: 185 PPVVPNFLRDLEANGWIPVRVDAYETRWAGLDCARKLVMRGKDEKLDAIVFTSTGEVEGL 244
           PPVVPNFLRDL A+GW+PVRVDAYETRWAG +CAR LV RG+DEKLDAIVFTSTGEVEGL
Sbjct: 181 PPVVPNFLRDLAASGWVPVRVDAYETRWAGPECARMLVKRGEDEKLDAIVFTSTGEVEGL 240

Query: 245 LKSLRDLGLDWEVMRSRWPEMVVAAHGPVTAAGAERLGVKVDLVSSKFDSFEGVVDALHL 304
           LKSLR LGL WE+MR +WPEMV+AAHGPVTAAGAERLGVK+DLVSSKFDSF GVVDALH 
Sbjct: 241 LKSLRTLGLKWEMMRKKWPEMVLAAHGPVTAAGAERLGVKIDLVSSKFDSFNGVVDALHS 300

Query: 305 RWQSLEQN 309
           RWQSLEQN
Sbjct: 301 RWQSLEQN 308

The following BLAST results are available for this feature:

BLAST of Sed0023235.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03635.1	1.5e-137	81.43	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase [Cucumis melo var. maku...	[more]
XP_008444040.1	2.6e-137	81.43	PREDICTED: uncharacterized protein LOC103487492 [Cucumis melo] >KAA0050031.1 Tet...	[more]
XP_011648476.1	1.3e-136	81.76	uncharacterized protein LOC105434481 [Cucumis sativus] >KGN65221.1 hypothetical ...	[more]
XP_023003818.1	1.7e-136	80.19	uncharacterized protein LOC111497286 [Cucurbita maxima]	[more]
KAG6587847.1	8.2e-136	79.29	hypothetical protein SDJN03_16412, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0023235.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023235.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX13	7.3e-138	81.43	Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7U8V3	1.2e-137	81.43	Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BA78	1.2e-137	81.43	Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis melo OX=3656 GN=LOC1034874...	[more]
A0A0A0LZ08	6.1e-137	81.76	Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucumis sativus OX=3659 GN=Csa_1G2...	[more]
A0A6J1KXQ2	8.0e-137	80.19	Hydroxymethylbilane hydrolyase [cyclizing] OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Sed0023235.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	PFAM	PF02602	HEM4	coord: 44..292 e-value: 6.0E-23 score: 81.4
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	CDD	cd06578	HemD	coord: 36..298 e-value: 5.49837E-24 score: 95.8371
IPR036108	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily	GENE3D	3.40.50.10090		coord: 184..303 e-value: 2.9E-15 score: 58.1
IPR036108	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily	SUPERFAMILY	69618	HemD-like	coord: 33..298
None	No IPR available	PANTHER	PTHR38020	UROPORPHYRINOGEN-III SYNTHASE	coord: 26..304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0023235	Sed0023235	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023235.1-exon	Sed0023235.1-exon-LG12:33247165..33248097	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023235.1-cds	Sed0023235.1-cds-LG12:33247165..33248097	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0023235.1	Sed0023235.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033014	tetrapyrrole biosynthetic process
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
molecular_function	GO:0004852	uroporphyrinogen-III synthase activity