Sed0023212.1 (mRNA) Chayote v1

Overview


Name	Sed0023212.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG06: 5576581 .. 5582345 (+)
Sequence length	480
RNA-Seq Expression	Sed0023212.1
Synteny	Sed0023212.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGGAACTTTATCGGTTGGGACAAAGAAGCAGATCTGCCTGCGGGTGGGGTTGGAATGGATGGTGGGTTAGATCGGATTTGGGAGGAAACTCAGAGTGGTGAGAGGCTTCCGATGGAGATGTGCCGGAATCTCACCAACAACGTGTCGCCGGAGGCTGCATCGGGAGATGACGAGGGAAAAGAAGAAAGTTTCAGAGACGACAGGAGCTTTCGGCCTGGTTCAGCAAAAAAGTTGGTATAATGGAAGGAGATGAAGGGATGGGCTCATCCTTTTGTGATAACAAGAAGAAAGGTCAGGGTCAAGTGGCAGGTGACCAATTGGCAAAGTTGACAGAAAAGGGGAAAGAGAAGCTGACAGGACAAGGGGTTGAAGAACTTTTATTTGGACCGTTTGAAATTAAAATAAGTAAAAATATTTCATAAGGCTGATTTTTTGAATCCCGTTAAAAGAGTTAAAAAAGGGATTGCTATTAAAGAAGTGGTGGGCCCAAGTTTTAAAGAAAATGAAAATTTAATGGAGGTACTTGATGAAGGAAAAAATGGGAAAATTGAGATTCACAACCCGTGTTTTAATGAAAATGAAAGTTCAATGGGGGCATTTAATGATGATGAAGGAAAATGTGGGGAGTTTATGACCCACAACCCATGTTTTATAGGAAAGGAAAAATTAATGAGGTTATTTAATGAAAGAAAAAGTGAGAAATTGGATTTGGATTTGAGAAGTCAATTGGGCTTGCTGGAAAAAAGGAATTCTATAAAATATCAAAAGAAGATAAAGTGGGGTTTAATATGGTAGAGAAAGTTAAGGAGAATTCCAATATTACAAAAGAGGGGTGTGGCAATTTTTTGGGTAGAAAATACTACAACAAAAATGAAGTAAAAGAGGTGGGCAAGATGGTAGATGAGTTGGAAAAAACTAGGATGTTAGATAAAGAATATGATGGAGTTCGGGGTGGAAAAATTAAAGGGACAATGTCTATTGTCAAGTGGAGAAGGAAAGCAAGATAAAAGGAAAGATTGCTAGAAATGCAAACATGAGAAAATAAAAATAGTGAGGGAGGAGTAGTTTGGAAAAAAAACATGATTTGGAGTGGTCAGAAATGATCGAGGTTGGAAAAAGAGGTAGGTTCGAATACATTAACGGTGTCAGTGGGATATCGGCGGAGACTGTTGAGCAGTCATGCCGGACGCAATGAAAACCTTATGTTGGAATGCTCGGGGGTTAAAAAACCCCTGGGCCATTAGAGCTCTTCGTCACGAAGTGCTCAAAGCGAATCCCCATATTGTGTTTGTTTATGAAACAAAGTGTTGTGAGAATGAGGTGGTTAGCTTAAAAATTAGTTTGAATTTTGACTGTTGTTTTTGTGTTCCTTGAGTTGGGCTCAGTGGGGGCTTGATGCTTTTTTGGAATACTCATTTGAATGTTTGTATTCGTTCTTACTCTCAAGGTCATATTGATACCTTAATTAAGGACGAGGGTGAGATGTGGAGATTTACTGGGTTCTATAGGAACCCGGTGCAAAATAAGCGTAGAGATTCCTGGAATCTTTTAAGAAGACTGGCGGGAGGATCATCGTTGCCTTGGCTGGTAGGTGGTGATTTCAATGAGATTCTCAATGTTGAAGAGCAAATGTTTGGAGCTGGTAAAGGTAGAGCAGGTATGGCTGAGTTCAGAGAAGTGATTAATGAGTGCTCGCTCATTGATGTGGGCTTCTCTAGCGATTTATTCACTTGGATTAAAAGAAAAGATTGTGCTTCTGCAATTAGAGTTCGTCTGGACAGGTATTTTGCTAACTCTTATTTTATTTCTAAAGCTCGTAAGATATCTATTAATCATTTAAGTTTTCACTCTTCGGATCATAGAATTATTGTTGCTAATTATAATTGGGTGGGTGAATGTTCAAGTGTGTTTAATTCTTCCAATAAATTATTGAGATTTGAAGATAGTTGGGTCAATTTATTGAATGTAAAGATGTGCATAGAAAGTGCTGGGGGGTAGAGGGTTATAGAGATCATCGTGCCTTTAATCTTATTAATTGTATTAAAGGGTGTCTGAAAGAGATGGCTAGGTGGAATAAGATGAAATTGAAGGGTTCGGTGAGACAAGCTATTGTTGATAAAGAAAAAGCCCTTTCGATGAATTACATGCAGAGCAATGTGGTTAGATCTGATCAAATTATTAATATTGAGAATGAGATTGAGAAATTGCTCGAAGAGGAGAAGATCTTTTGGAAGCAAAGATCGAGGGATGTCTGGCTCAAGTGGGGAGACAGGAATACAAAATGGTTTCACATGAGAGCCTCTCAAAGGAAAAAAAGGAATCGTATTGATAAACTTAAGGACGTTTGCGAGAATTGGCAGGTTGATGGGAGTGACATTGTCAAAGTTGCTAAGGATTACTTTGTTGATATTTTCTCGTCTCACGACAAAGATGATGAGGCTGTTGGGAGGATCTTGGCTGGGGTTGAAAGAAAGCTCTCGGATAGGGATATTCAATTCCTCGATAGGCATTTTTTGAGATCTGATATTGAGATGGCTCTTAAAAATTTAAATCCTTCTAAGGCCTTTGGGCCGGATGGAACAAATGGGATTTTTTTCAAAACATACTGGGATATAATTGGCCATGATGTGGTCAATTCTTGCTTAGGGGTGCTTAATGTGGGTAAGTTGTTGGACTCGATGAATGATACATTAATTGCTTTGATTCCTATGGTCCAATGCCTTAAAAGAATGGAAGAGTTTCGATCGATCAGTCTTTGTAATACTATGTATAAAATCGTTGCTAAAGCAATGTCTAACAAGCTGAAAGTTGTGATTGATAAAATCATATCTCCTAATCAAGCGTTCTTTGTCCCTAGGAGACTTATTACTGATAATGTTATTCTTGGTTTTGAATGTATTCATACTATTAATCAGAGGAAATCTGGGAAGGTTGGTTGGGGAGCTCTGAAGTTAAATATGAGTAAGGCTTATGATAGAGTGGAGTGGAGCTTTGTCCTTGATATGAGGGAGCGGCTGGGTTTTAGTAAAGTTTGGATTAATCTTATAAGCAGATGCATCTCTTCGGTTCTCTTTGCGGTGATGGTTAATGGCTCCCCGTATGGGGAGATTATTCCGCAGAGAGGTCTAAGACAGAGAGACCCTCTCTCTCCTCATCTTTTTTTTATTTGTGTTGAAGGGTTGTTTATGCTCCTCAAGAAAGAGGAGTTGAATTCTTTTAAGAGTTTTAAGATTAATAACCATTGTCCTGCTATTTCTCATTTATTTTTTGCTGATGATACCTTGTTATTTTTCAGGGCTAATACTGAGGATTGTTTGAAAATTAAAAATATTCTTAATTGTTATGAAAGAGCTTCTGGTCAACTGATCAATTATGAGAAATCAACCATTATGTTTAGCGGTAATATCAGGGCAAATGATCAAATTTTTCTTAGCAATTTGTTTGGTGTTAAAGTGAATGAGAATCTTGGAGTTCATCTGGGTATACCCTCTCAAAATAGCAGGAACAAGAAGGCTCTTTTTCAATCCATCAGATGTAGATTGGAAAAGCGTCTTCAAGGGTGGAAAGGAAAAATGTTGTCGAGAGGTGGGAAAGAGGTGTTAGTTAAGGAGGTTGGTCAGGCGATCCCAACCTATGCTATGAGTTGTTTTCGTTTGACTAAATCTTTTAATGAGAACCTTCAAAATTTATGTTCTAAATTCTGGTGGGGGGAGGATTCGAATAGCAGAAAGGCCTATTGGATGAGCTGGAAAAATTTGAGCAAAAGTAAGAAGCTGGGGGGGCTTGGTTTTAGAAATCTGAATGTTTTTAATCAAGCTCTATTAGCTAAACATAATTGGCGAATCTTGAGAAACCCCAACATCTTATTAAGTAGATTGTTAAGAGGAAAGTATTTTGTGAGTGGAGATTATTTATCGGCTTCTTTGGGAAATAATCCTTCTTTAGTTTGGCGGAGTATTTTGTGGGGTAGAGATTTGTTTAAGAGAGGTTATAGGTGGAAGGTGGGCAATGGGTGGAAAATTAAGATTGGTAGAGATCTTTGGCTTAATAGAGTTGGAAATCCTTTTGCTGATGGGGTTAGGGAAGATTGGAAGGATATATATGTGGTAGATTTATTGAGGGATGATAGATCATGGAAGGAGGAGATTTTAGAGAATAGTTTTTGCAAAGAAGATGCTGAAATCATCTATAATACCCCTCTGAGTGATGTGGTGATGCCGGATGAAGTGATTTGGAATGCTAGCGAGAACGAAGTTTTTTCAGTGAAAAATGCATATCATATTGGGCTTGAGTTTGAAAATTTGAAAGAGGTGTCTACCTCGGATCCTAAAATGACGTCGGGAATTTAGAATAGCTTCTGGAAGGTGGAGCTTTCCCCTAAAATCAAAGTGGGTGCTTAGAGTGTCCTTGCTAATGCCATTCCGACTAAATGCAACATGTATTTGAGAGGGGTGGATTCTAATACTTATTGCCCTTTATGTGGGAAAGCGAGGGAGTCGAATATGCATACTTTGAAGGATTGTAAATTGGCCATCCGTCTTTGGAAATATATTTTTCCCTAGTTTTCTGAGTTTAGTAATTATTTCGTGAGGATAGAGAAGGGGGTGGATTTCTGGAAAGGATTAAGTGATAAAATTCCTAAGGAAGAGTGGTTTAAAGGTATTATTATCAGTTAGAGCTTATGGAACTTCAGAAACCAATGTATCAATGGCAAGTTGGTCTTGAAGTTTCATAATCTCATAAATATTATCGAAAAAGCTATTAATGTTTATAATTTTATTGGTGTAGGTTCTGTAGCCAAGTCCTCTCATGAATCAAATGTTGCTTGTAGATGGATGACTCCCTCTAAAGGAATTGGAAATTGAATGTGGATGCTTCTTTGCATCCAAATTCGAGAAGGGGAGGCATTGGATGGGTGGTTCGCGATTGGAAAAGGCATCCTAAGTTGATGGGTTGGAAATCCAATTTATTGCATCAATTAGTGAAGGTTTTTGAAGGAAGAACTTTAAGGGAGGGCTTGAAGCAGTTAAGCGATGTTCAAAGTTTGTTTTTACCTCTGATTTTGGTGGAGTCCGATGCCTCAAATGTTATTAAAGCTGTTGTTAATGACTCCCCAGATATTTCTGAATTCAGCAATATCGTTGTTGATATGAAGCAATTAATTGCTTCTCTTGGCATAGTGTAAGTTTCCTATTGTAATAGGCGTTGTAATATGATCGCTGATTTATTAGCCAAGAAGGATTATGGTGTTGGTTTTTGTTGGAAAGACCCTTCTATCATGCTTGAAGAGGAGTCTTTTTTTTTTTTAGGGGGAATCTCCCCCTTGACATTGGCTCCATTTTGGAGAATGATTGTAATGGTTCGGTTTGTTCTTGATTGGATTTTTTTTTTCAAAAAAAAAAATATATAATAAAAATCAATTTAGAAAAGCAATTGGAAATAATAAAAGAAAAAAATACTCTCGTTTATCTTCTTCATCTTCGCCAACTCAAACCCTAGCTCCATCCTTAACCCCGAAGAGTCACTGCCGCCGATCTGGCCCTACCATCGCCGATCTACTCCAGCCGCCGTCGCAATCTGCGCCTCACGCCAGTGGAACCCTCGAGCCACGCGCACACGCCTCTTCTGCTCGCTTTAAGCAGCCGCCACCATCCATGCCTTGCTCCCTCGCGCACGCAATCTTGGGCAGACGAGTAGTAGGGGTCTACGCGCGAGCCTTAGCCAAGGTGTCACGCCAAAAACCTGAGCCTAATCGTTGA

mRNA sequence

ATGTTGGGGAACTTTATCGGTTGGGACAAAGAAGCAGATCTGCCTGCGGGTGGGGTTGGAATGGATGGTGGGTTAGATCGGATTTGGGAGGAAACTCAGAGTGGTGAGAGGCTTCCGATGGAGATGTGCCGGAATCTCACCAACAACGTGTCGCCGGAGGCTGCATCGGGAGATGACGAGGGAAAAGAAGAAAGTTTCAGAGACGACAGGAGCTTTCGGCCTGGTTCAGCAAAAAAGTTGAGTCACTGCCGCCGATCTGGCCCTACCATCGCCGATCTACTCCAGCCGCCGTCGCAATCTGCGCCTCACGCCAGTGGAACCCTCGAGCCACGCGCACACGCCTCTTCTGCTCGCTTTAAGCAGCCGCCACCATCCATGCCTTGCTCCCTCGCGCACGCAATCTTGGGCAGACGAGTAGTAGGGGTCTACGCGCGAGCCTTAGCCAAGGTGTCACGCCAAAAACCTGAGCCTAATCGTTGA

Coding sequence (CDS)

ATGTTGGGGAACTTTATCGGTTGGGACAAAGAAGCAGATCTGCCTGCGGGTGGGGTTGGAATGGATGGTGGGTTAGATCGGATTTGGGAGGAAACTCAGAGTGGTGAGAGGCTTCCGATGGAGATGTGCCGGAATCTCACCAACAACGTGTCGCCGGAGGCTGCATCGGGAGATGACGAGGGAAAAGAAGAAAGTTTCAGAGACGACAGGAGCTTTCGGCCTGGTTCAGCAAAAAAGTTGAGTCACTGCCGCCGATCTGGCCCTACCATCGCCGATCTACTCCAGCCGCCGTCGCAATCTGCGCCTCACGCCAGTGGAACCCTCGAGCCACGCGCACACGCCTCTTCTGCTCGCTTTAAGCAGCCGCCACCATCCATGCCTTGCTCCCTCGCGCACGCAATCTTGGGCAGACGAGTAGTAGGGGTCTACGCGCGAGCCTTAGCCAAGGTGTCACGCCAAAAACCTGAGCCTAATCGTTGA

Protein sequence

MLGNFIGWDKEADLPAGGVGMDGGLDRIWEETQSGERLPMEMCRNLTNNVSPEAASGDDEGKEESFRDDRSFRPGSAKKLSHCRRSGPTIADLLQPPSQSAPHASGTLEPRAHASSARFKQPPPSMPCSLAHAILGRRVVGVYARALAKVSRQKPEPNR

Homology

The following BLAST results are available for this feature:

BLAST of Sed0023212.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0023212.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0023212.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0023212.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0023212	Sed0023212	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023212.1-exon	Sed0023212.1-exon-LG06:5576581..5576820	exon
Sed0023212.1-exon	Sed0023212.1-exon-LG06:5582106..5582345	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023212.1-cds	Sed0023212.1-cds-LG06:5576581..5576820	CDS
Sed0023212.1-cds	Sed0023212.1-cds-LG06:5582106..5582345	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0023212.1	Sed0023212.1-protein	polypeptide