Sed0023096.1 (mRNA) Chayote v1

Overview


Name	Sed0023096.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	vacuolar protein sorting-associated protein 55 homolog
Location	LG05: 1990599 .. 1993421 (+)
Sequence length	861
RNA-Seq Expression	Sed0023096.1
Synteny	Sed0023096.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAATTGACAACAAAATAATAGCTAACTAAATGAAATAAAATGGATGATTTCGTGATTTCATTATCATTTGGAGAAGAGAGCAGCAGAATTCTCTGATTTCTTCATTCCGATTCCGGCGAATCAGCCGGCGAGCTCGTTGTTTTCTCAGGTTTTTATCTCTTCCGCTTCAATTTCATCGTATTACTGTATATTCTTCACAGATTTGAGTCGGATCTTGAACTTATTACGCTATTCGTCGATTTTGTTCGAGTAGAACTGATTAATTCCATCGCTGTTTAACCTTTTTGTTGCGATATTGATGAAATTGAAGCTAAAATCGTGTTAGAATTCAATGAAACTGTGTCGGTAATTTGTTCGGAATTAGGTCAGTGTTCGAGTTTGGTCACATTTTCGTTCAGATATTATGAATTTTCAATGCTAGTCGGGGTTTCATGAGGCTGATTGAGATGGAGGAGAACTGTTGTAAAATCACGAGCACTTTCAACAATGTTTGCATTACTTACTAAAATTACAATTAATTTGCGAAAACGTTTTGGTATTTTGTTCGGAATTAGGTCTGTATTCGAGTTTGATCGCAATTACCGACTGGAAGCATAATTTCATTGAGATTTTTTGAATTGTTAATGCTTTCCGGGGCTTCATTTCACTGTCTGAAACTGTTTGAGATGGAGAAAACTTTGTAGTAAAATGACGAGCACTTTTGTCCCCAAGAGGTAGCACAAGGCTTGAAGACTTGGGTTTTGAGAGTATGCTCCTCTCAAGGTCCCACGTTCGAGACTCAACTGTGACATTACTTCGATGTCTCCCGGTGCCTAGCTCAGGGACAGACGTGGTTACCCTTGTTTCAAAAAAAAAAAAAAAAATGACGAGCACTTTCAACAATGATTACATTGCTCACTGAAATTACAGATTCTCTATATTTCAGCTGTTTTCTCTTACTTTCAATCCTTCAATCGTTGAAATTGGTGTATTTCAGTTGTTTTCCTTAATGAAGTGAGAAGAATTACCTGATGGCGGACTTGGGAAACTGTTTTCATATGAGCAAAGTCGTAACACTAGGAATTTTGGTTTCTGGTGGGATTGTGTTGCAGTTTTTGGTCAGTACAAACCTCTTTCCTTTCAAACACTTGCTCCATAATTTCTCAATTTTTATTTTGTTAATTTTTGTTCAGATTTCTGAAGTCTTTCATTTATGTGTAATGACAGGCATGTGCTTTGTACAATAATTGGTGGCCGTTGCTGAGTGGTAAGATTGAAACATGATGATTCTGATCATTACTTTCTTTATGTATGATATCTTCAAAACTTCCCAAGTAGCCGATTACCATACTTTCTTCTGTCACAATACAGAAAGTTCACAAACAGTAGTAAATACTTCTTATATTCTTACTTTAACACGCCAATGAGTGATATTTTATCTAATTTCATCAACCCCTCAACCAATTAAATGTTGTAATATAGTACTTTTTTTTAATGACCCGGAAACTTGGAGTTTTACTTCTCTAAACTCATGAGCACCATTGACCCGTTCCTAGACTGTAACTTTAGAGTTCATCATAGGATTGAAAGCAAAATTGGAGGGTTTCATGAGAAATTAACCTCCACAGCCCTCACCTGAGATTTTGAGGGAAGTATACTCTCAAAGCTTGAACCCTCAACAACTAGGGCGCCTTCAGGGAACAAATGATTTAGTTTGGTAGGAAAAGCTTTCCTCATTACTTCAGGCCTAGAAAATTTTCAGTAACCATACTATATTACCTCTTTTTTGGGGATAACTGGTAATTGGAGTTTCACTCCAATTCACGTACACATGCCATTTGCACCCATCCTAAGGTCCGGATATCAAGAGATTTTACAATTAAGCTCATTTATGGATTTGAAATCTAAAACTTTTAAAGAGGCATACATCGGAGATCACACGCCTTTACCAATAAGACCATCTCTTGGGACAGGTGCCATAATCTACAACTGGTTTGTCTCAAAATAGAACTTGTAGTATTTTTAACTTCTTGGTTTTTTCTTGGGAAGTATACAGTAATGGGTTTTTCGTGTAGAGACTTGTTGCTTCCTTTCAGTACTTTCTCAAGAAGGCAATCAAATTAAACTCCTCTTGCAAGCAATAAAATTAATTCAGAAAATACTTCGTTGATGATAATCTCATTTCATTGTTCTGGCAGTGGTTATGTATGTTCTTCTCCCAATGCCTTTGCTGTTTTTCACTGGCTCGGATAGTTCTTCGCTATTTTCCGAATCAGGAGACAGGTTTGGTTTTCCGTCTTTTTATTTTCATTCCCAGACATTCTAGATCAATACCTAGGCTTGATAACAAGTTTATTTTGAACGAGTAACGAAACAGTTGGGTCGATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTTGGAAGCATTGCCATACCTGTAATTCTGAAGCATGCTGATATTATCGGCTGGGGAGCGCTCGCACTGAGCCTCTCGTCCCTTATAGTTTTCGTGGTGGCCATTTTTTGTTATCTATGGACAAGTAATGAAGACAACTACTATATACTCTAAGATGTATCTCCCCTAAAGTACCCATTGCAGTAGAAACCATTTTCCTCGATGTCGAAAATCGTAACTACTTATTCTCATTGCCCTCATTTCTGCTGAAGTTGAAAAGATAGTTTTCATATTTTCATTTCGAGTTACAATCTCTCTTCCGTGCTTCAACTTTTATCAAATGGTTTAATGAATGCACAGAAACTCCACCGAACGACCGGTGTAGGTGCCCTTAGGTATATAGTGGAACAAAGAGTCAATTCCGAGTTATAAAAAAATGTGGAAG

mRNA sequence

GATAAATTGACAACAAAATAATAGCTAACTAAATGAAATAAAATGGATGATTTCGTGATTTCATTATCATTTGGAGAAGAGAGCAGCAGAATTCTCTGATTTCTTCATTCCGATTCCGGCGAATCAGCCGGCGAGCTCGTTGTTTTCTCAGTTGTTTTCCTTAATGAAGTGAGAAGAATTACCTGATGGCGGACTTGGGAAACTGTTTTCATATGAGCAAAGTCGTAACACTAGGAATTTTGGTTTCTGGTGGGATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAATTGGTGGCCGTTGCTGAGTGTGGTTATGTATGTTCTTCTCCCAATGCCTTTGCTGTTTTTCACTGGCTCGGATAGTTCTTCGCTATTTTCCGAATCAGGAGACAGTTGGGTCGATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTTGGAAGCATTGCCATACCTGTAATTCTGAAGCATGCTGATATTATCGGCTGGGGAGCGCTCGCACTGAGCCTCTCGTCCCTTATAGTTTTCGTGGTGGCCATTTTTTGTTATCTATGGACAAGTAATGAAGACAACTACTATATACTCTAAGATGTATCTCCCCTAAAGTACCCATTGCAGTAGAAACCATTTTCCTCGATGTCGAAAATCGTAACTACTTATTCTCATTGCCCTCATTTCTGCTGAAGTTGAAAAGATAGTTTTCATATTTTCATTTCGAGTTACAATCTCTCTTCCGTGCTTCAACTTTTATCAAATGGTTTAATGAATGCACAGAAACTCCACCGAACGACCGGTGTAGGTGCCCTTAGGTATATAGTGGAACAAAGAGTCAATTCCGAGTTATAAAAAAATGTGGAAG

Coding sequence (CDS)

ATGGCGGACTTGGGAAACTGTTTTCATATGAGCAAAGTCGTAACACTAGGAATTTTGGTTTCTGGTGGGATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAATTGGTGGCCGTTGCTGAGTGTGGTTATGTATGTTCTTCTCCCAATGCCTTTGCTGTTTTTCACTGGCTCGGATAGTTCTTCGCTATTTTCCGAATCAGGAGACAGTTGGGTCGATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTTGGAAGCATTGCCATACCTGTAATTCTGAAGCATGCTGATATTATCGGCTGGGGAGCGCTCGCACTGAGCCTCTCGTCCCTTATAGTTTTCGTGGTGGCCATTTTTTGTTATCTATGGACAAGTAATGAAGACAACTACTATATACTCTAA

Protein sequence

MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDNYYIL

Homology

[Close]

BLAST of Sed0023096.1 vs. NCBI nr
Match: XP_022157395.1 (vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP_022157399.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia])

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-55
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSD 60
           MADLG C+HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+LLPMPLLFF GSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 61  SSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIF 120
           +SSL SESGDSWV+ATKFLTGAS VGSIAIPVILKHA+IIGWGALAL LSSL+VFVVAI 
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 121 CYLWTSNEDNYYIL 135
           CYLW SNED+Y  L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Sed0023096.1 vs. NCBI nr
Match: XP_022155500.1 (vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP_022155501.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia])

HSP 1 Score: 198.4 bits (503), Expect = 4.0e-47
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 1   MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      CF M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVLLPMPLLFF
Sbjct: 1   MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61  TGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV 120
            GSDSSSL++ES DSW++ATKFLTGAS +GSIAIP+ILKHA IIGWGALA+ LSS +VFV
Sbjct: 61  GGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMDLSSFLVFV 120

Query: 121 VAIFCYLWTSNEDNYYIL 135
           +AI C+LW + +D+ Y +
Sbjct: 121 IAILCFLWMNEDDDSYTM 138

[Close]

BLAST of Sed0023096.1 vs. NCBI nr
Match: EXC26716.1 (hypothetical protein L484_023330 [Morus notabilis])

HSP 1 Score: 195.3 bits (495), Expect = 3.4e-46
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 1   MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL +    C H  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF
Sbjct: 47  MADLPHYVVACLHTGKLAALAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFF 106

Query: 61  TGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV 120
            GSD S+LFSES +SWV+ATKFLTGASAVGSIAIP ILKHA +IGWGALA+ LSS  VFV
Sbjct: 107 AGSDGSALFSESDNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFV 166

Query: 121 VAIFCYLWTSNEDNYY 133
           +AI C++  ++EDNYY
Sbjct: 167 LAIMCFIGMTDEDNYY 182

[Close]

BLAST of Sed0023096.1 vs. NCBI nr
Match: XP_024030670.1 (vacuolar protein sorting-associated protein 55 homolog [Morus notabilis])

HSP 1 Score: 195.3 bits (495), Expect = 3.4e-46
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 1   MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL +    C H  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF
Sbjct: 1   MADLPHYVVACLHTGKLAALAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFF 60

Query: 61  TGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV 120
            GSD S+LFSES +SWV+ATKFLTGASAVGSIAIP ILKHA +IGWGALA+ LSS  VFV
Sbjct: 61  AGSDGSALFSESDNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFV 120

Query: 121 VAIFCYLWTSNEDNYY 133
           +AI C++  ++EDNYY
Sbjct: 121 LAIMCFIGMTDEDNYY 136

[Close]

BLAST of Sed0023096.1 vs. NCBI nr
Match: XP_021599879.1 (vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY24482.1 hypothetical protein MANES_17G019200v8 [Manihot esculenta] >OAY24520.2 hypothetical protein MANES_17G019200v8 [Manihot esculenta])

HSP 1 Score: 193.7 bits (491), Expect = 9.9e-46
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      C    K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVLLPMPLLFF
Sbjct: 1   MADLPGYVRACLQSGKLAFLAILVSGGIILQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61  TGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV 120
            GSDSSSLFSES +SWV+ATKFLTGASAVGSIAIP ILKHA +IGWGALA+ LSS  VFV
Sbjct: 61  AGSDSSSLFSESNNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFV 120

Query: 121 VAIFCYLWTSNEDNYYIL 135
           +AI CY+  ++ED Y IL
Sbjct: 121 IAIMCYISMNDEDGYSIL 138

[Close]

BLAST of Sed0023096.1 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 9.7e-44
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 4   LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSS 63
           L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYL 123
           LF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWGALAL LSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WTSN-EDNYY 133
              +  DNYY
Sbjct: 128 CIGDASDNYY 137

[Close]

BLAST of Sed0023096.1 vs. ExPASy Swiss-Prot
Match: P47111 (Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS55 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 33/123 (26.83%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 10  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSD---SSSLFS 69
           ++K+++L   ++ G +L  L+CAL++N++PL  +++++L P+P   F   +   +S   S
Sbjct: 9   LTKIISLSGFLALGFLLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMS 68

Query: 70  ESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYLWTS 129
           +S ++  D   FLTG      IA+PV+  H  +IG  +  + +   ++   +I  + W  
Sbjct: 69  DSSNTGQDLAHFLTGMLVTSGIALPVVFYHCQLIGHLSCIMCMIGGLIIYSSIVIFKWFF 128

[Close]

BLAST of Sed0023096.1 vs. ExPASy Swiss-Prot
Match: Q9UUH1 (Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vps55 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-09
Identity = 36/125 (28.80%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 10  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMP-LLFFTGSDSSSLFSES 69
           + K++ L  +++ G +L  L+CAL+ NW+PLL V+ ++L P+P LL    S S     E 
Sbjct: 4   LRKIIGLSSVLAVGFMLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEE 63

Query: 70  GDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSL--SSLIVFVVAIFCYLWTS 129
             + +D  +F  GA+     A+P++  +  +IG  A  +S    S+I  V+ ++   +  
Sbjct: 64  DRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQ 123

Query: 130 NEDNY 132
           +E+ +
Sbjct: 124 HEEEF 128

[Close]

BLAST of Sed0023096.1 vs. ExPASy Swiss-Prot
Match: Q54VP1 (Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoideum OX=44689 GN=vps55 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 0


Query: 23  GIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATKFLTGA 82
           G++   LAC + ++ +P++ V  Y L P P +     DS   FS    ++ D   FLTG 
Sbjct: 15  GLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDS---FSSEKGTFEDIGLFLTGL 74

Query: 83  SAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYLWTSNEDN 131
                 AIP+IL H+DII   ALA S++  +     I  +LW  N  N
Sbjct: 75  FITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLWFFNRHN 119

[Close]

BLAST of Sed0023096.1 vs. ExPASy Swiss-Prot
Match: Q32PD8 (Leptin receptor overlapping transcript-like 1 OS=Bos taurus OX=9913 GN=LEPROTL1 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.8e-05
Identity = 36/115 (31.30%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 23  GIVLQFLACAL--YNNWWPLLSVVMYVLLPMPLLFFTGSDSSSLFSESGDSWVDATK--- 82
           G++   L CAL  YN +WPL  +  Y+L P+P         +    +  D+  +A K   
Sbjct: 17  GLMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCI------ARRLVDDTDAMSNACKELA 76

Query: 83  -FLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAI--FCYLWTSNED 130
            FLT    V +  +P++   A++I WGA AL L+   V    I  F  ++ SN+D
Sbjct: 77  IFLTTGIVVSAFGLPIVFARANLIEWGACALVLTGNTVIFATILGFFLVFGSNDD 125

[Close]

BLAST of Sed0023096.1 vs. ExPASy TrEMBL
Match: A0A6J1DSZ0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111024101 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.7e-56
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSD 60
           MADLG C+HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+LLPMPLLFF GSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 61  SSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIF 120
           +SSL SESGDSWV+ATKFLTGAS VGSIAIPVILKHA+IIGWGALAL LSSL+VFVVAI 
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 121 CYLWTSNEDNYYIL 135
           CYLW SNED+Y  L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Sed0023096.1 vs. ExPASy TrEMBL
Match: A0A6J1DML0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111022633 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 1   MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      CF M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVLLPMPLLFF
Sbjct: 1   MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61  TGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV 120
            GSDSSSL++ES DSW++ATKFLTGAS +GSIAIP+ILKHA IIGWGALA+ LSS +VFV
Sbjct: 61  GGSDSSSLYTESNDSWINATKFLTGASTIGSIAIPIILKHAGIIGWGALAMDLSSFLVFV 120

Query: 121 VAIFCYLWTSNEDNYYIL 135
           +AI C+LW + +D+ Y +
Sbjct: 121 IAILCFLWMNEDDDSYTM 138

[Close]

BLAST of Sed0023096.1 vs. ExPASy TrEMBL
Match: W9SFY2 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023330 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.7e-46
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 1   MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL +    C H  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF
Sbjct: 47  MADLPHYVVACLHTGKLAALAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFF 106

Query: 61  TGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV 120
            GSD S+LFSES +SWV+ATKFLTGASAVGSIAIP ILKHA +IGWGALA+ LSS  VFV
Sbjct: 107 AGSDGSALFSESDNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFV 166

Query: 121 VAIFCYLWTSNEDNYY 133
           +AI C++  ++EDNYY
Sbjct: 167 LAIMCFIGMTDEDNYY 182

[Close]

BLAST of Sed0023096.1 vs. ExPASy TrEMBL
Match: A0A0A0L5B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.8e-46
Identity = 95/130 (73.08%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 2   ADLGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDS 61
           A L  C  M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVLLPMPLLFF GSDS
Sbjct: 6   ASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGSDS 65

Query: 62  SSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFC 121
           SSL+++S DSW++ATKFLTGAS VGSIAIPVILKHA IIGWGA+A+ LSS +VFVVAI C
Sbjct: 66  SSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAILC 125

Query: 122 YLWTSNEDNY 132
           ++  S +D+Y
Sbjct: 126 FMGMSEDDDY 135

[Close]

BLAST of Sed0023096.1 vs. ExPASy TrEMBL
Match: A0A2C9U468 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.8e-46
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MADLGN----CFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      C    K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVLLPMPLLFF
Sbjct: 1   MADLPGYVRACLQSGKLAFLAILVSGGIILQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61  TGSDSSSLFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFV 120
            GSDSSSLFSES +SWV+ATKFLTGASAVGSIAIP ILKHA +IGWGALA+ LSS  VFV
Sbjct: 61  AGSDSSSLFSESNNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFV 120

Query: 121 VAIFCYLWTSNEDNYYIL 135
           +AI CY+  ++ED Y IL
Sbjct: 121 IAIMCYISMNDEDGYSIL 138

[Close]

BLAST of Sed0023096.1 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-45
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 4   LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSS 63
           L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYL 123
           LF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWGALAL LSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WTSN-EDNYY 133
              +  DNYY
Sbjct: 128 CIGDASDNYY 137

[Close]

BLAST of Sed0023096.1 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-45
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 4   LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSS 63
           L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYL 123
           LF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWGALAL LSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WTSN-EDNYY 133
              +  DNYY
Sbjct: 128 CIGDASDNYY 137

[Close]

BLAST of Sed0023096.1 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-45
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 4   LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSS 63
           L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYL 123
           LF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWGALAL LSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WTSN-EDNYY 133
              +  DNYY
Sbjct: 128 CIGDASDNYY 137

[Close]

BLAST of Sed0023096.1 vs. TAIR 10
Match: AT1G32410.4 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-45
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 4   LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSS 63
           L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYL 123
           LF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWGALAL LSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WTSN-EDNYY 133
              +  DNYY
Sbjct: 128 CIGDASDNYY 137

[Close]

BLAST of Sed0023096.1 vs. TAIR 10
Match: AT1G32410.5 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-45
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 4   LGNCFHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFTGSDSSS 63
           L  C  M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVDATKFLTGASAVGSIAIPVILKHADIIGWGALALSLSSLIVFVVAIFCYL 123
           LF+ES +SW++A KFLTGASAVGS+AIP ILKHA +IGWGALAL LSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WTSN-EDNYY 133
              +  DNYY
Sbjct: 128 CIGDASDNYY 137

The following BLAST results are available for this feature:

BLAST of Sed0023096.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157395.1	1.4e-55	84.33	vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP...	[more]
XP_022155500.1	4.0e-47	71.01	vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP...	[more]
EXC26716.1	3.4e-46	72.06	hypothetical protein L484_023330 [Morus notabilis]	[more]
XP_024030670.1	3.4e-46	72.06	vacuolar protein sorting-associated protein 55 homolog [Morus notabilis]	[more]
XP_021599879.1	9.9e-46	72.46	vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY2...	[more]

BLAST of Sed0023096.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	9.7e-44	70.00	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]
P47111	2.7e-09	26.83	Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (stra...	[more]
Q9UUH1	5.9e-09	28.80	Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (str...	[more]
Q54VP1	1.3e-08	34.26	Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoide...	[more]
Q32PD8	6.8e-05	31.30	Leptin receptor overlapping transcript-like 1 OS=Bos taurus OX=9913 GN=LEPROTL1 ...	[more]

BLAST of Sed0023096.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSZ0	6.7e-56	84.33	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]
A0A6J1DML0	2.0e-47	71.01	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]
W9SFY2	1.7e-46	72.06	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023330 PE=3 SV=1	[more]
A0A0A0L5B3	4.8e-46	73.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1	[more]
A0A2C9U468	4.8e-46	72.46	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=...	[more]

BLAST of Sed0023096.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32410.1	6.9e-45	70.00	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	6.9e-45	70.00	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	6.9e-45	70.00	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.4	6.9e-45	70.00	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.5	6.9e-45	70.00	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 13..129 e-value: 4.1E-34 score: 117.0
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 4..131
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 4..131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0023096	Sed0023096	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023096.1-five_prime_utr	Sed0023096.1-five_prime_utr-LG05:1990599..1990749	five_prime_UTR
Sed0023096.1-five_prime_utr	Sed0023096.1-five_prime_utr-LG05:1991578..1991611	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023096.1-exon	Sed0023096.1-exon-LG05:1990599..1990749	exon
Sed0023096.1-exon	Sed0023096.1-exon-LG05:1991578..1991698	exon
Sed0023096.1-exon	Sed0023096.1-exon-LG05:1991808..1991847	exon
Sed0023096.1-exon	Sed0023096.1-exon-LG05:1992779..1992863	exon
Sed0023096.1-exon	Sed0023096.1-exon-LG05:1992958..1993421	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023096.1-cds	Sed0023096.1-cds-LG05:1991612..1991698	CDS
Sed0023096.1-cds	Sed0023096.1-cds-LG05:1991808..1991847	CDS
Sed0023096.1-cds	Sed0023096.1-cds-LG05:1992779..1992863	CDS
Sed0023096.1-cds	Sed0023096.1-cds-LG05:1992958..1993150	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023096.1-three_prime_utr	Sed0023096.1-three_prime_utr-LG05:1993151..1993421	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0023096.1	Sed0023096.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
biological_process	GO:0006048	UDP-N-acetylglucosamine biosynthetic process
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004610	phosphoacetylglucosamine mutase activity