Sed0022183.1 (mRNA) Chayote v1

Overview


Name	Sed0022183.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	THO complex subunit 6
Location	LG08: 7373952 .. 7387361 (-)
Sequence length	1596
RNA-Seq Expression	Sed0022183.1
Synteny	Sed0022183.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGGTAAATGTTAGGACACTACATGATTCCCCTTCACGACTGAGACAGCCAATTGCATCTATAAGTTCCTCCGGCGAGTCGTTGAAGGCCGTTTTCAGATTATCCGCCGCATTTTCTGGCTCTAACGCCGCCGCCGCATCGTCGTTCCTAGCTTCGCCATTGTCGTTTCAAACAAACATTTAGGAGTTCGGAAAAGTAGTCGTAGCAAGCGGTAGCAAAATGCTGGCGGACGCGACGAATTGGGACGAAGATGCTTACAGAGGGACTATACACAGAGAAATAGAGGTCCAGACTCGGACTGTGTTCAGAACTGCTTGGGCGCCGTCTTCTAATGGTTCCCCTGAGACCGTCGTGGTCGGCTCCAGTGATGGATCCATTGCGTCTTATTCCATCGCTTCCTGCATCTCTAAGCTGGTAATTTTCTTGATTTTTGGTATTGATATTCATTTTTTGTTTGATTTGCTTATGAAATCGGTATTGGAAATGGGTTCTTTGTTCAGACTATTTGGATGAGAAACTAATTTCACTGAGTAATTAGGTTTTCGATGCTCAAAGAAAATTATGAAAGGCTCTTCCAAATGGCGGAAAGAGAATTGAAGAGCCTTTAATGGATGATTACAGAAAAAGGATCATACAGCTTGAATCAAACGGGGGTGTTTGATTTTTGGTTATGTGGAGTTACAAATGAGAATTTTCAACTTCACCTAAAAAAACATATCCAGCAACCACTCAAAATAACTACTAATTTTTAGTCACTCAAAATAATTACTCATTTAAAAAAAACACTAATTTCTTACCACTCATTTATGCAAATCCTCTTCAAAATACATATCCAAATGAGCTATTACTACACCCTCAACTTCTAATAATTCAAAATAACTTTTCATCCTAATCACTCAAAATAGCTCCTCACGCATCTACTCATCCAAACACCTCCATAGGAGTTGCTTTTAAAGATCTCTACTGTCCCACATTGGAAAAATGGAGAATCCTCCAAACATTTATAAGATAGATGGGCTACTCCTCTCATAACCAATTGATTTTGAGATGGATGCTCAGACTATCTAATTGTTACTAGGCTGAGATTGTCCAGAAGACGGTCAAAAGACTTCTTCAAGTGGCTCAAGAGACTATTATTTATTATAATCCCCAAAGGCCTAAAAGAGGCTCAAGGATCTTATTCTTCTTGAAAGGATGAGCATCAAAGTGAGAGAGAGGGGGTCCTTCGTATCCTAGAAAAGAGTTGTGTGCCACTTGAAATTTAGAAGCATCGAGTTCCAAAATTTGTCCTCAAAGTGATAAGTGAGGGAATGTGGCCATTTGACCCATGAATGCATTAACAAATACAACACCTGTCATGCCAAAAGGAGTAGTACTCTAGTGGCAACATGTATCAAATAGTAACTAGTTGGTTACGGGTTCAAGTTCCAAATATTGTTGAATTAAAAAAAATACAACGCCTGCCACAAGAAAGAAATATCCTTTGAATCTTATTACGAGCGTTGAAGCCTTTGTGACTTGGAAGCAATCCCCTTAAGAAGAATTTGAGGTTTTAAAGATATCTACGTCTCCAATTATTGTACCAAAGGCAAGGACTTAATGAAGCTCAGTTAAAAGCTAGGTCTTTGAATCAAAACTTACCAGACAAATTCCCAGTAGGATCGACTGCCATATCCATTTTCACTATCATCGATGAGGGAGAAATTCAAGAAAATGCTAGTAAGATTGGTCCAGTGTTGCGGCAAACACCTTGAGAATAATTGAGTTCCTAGCTTCTTTGATGGGATACTCTTTTCTTATATAAAAGGGAGAAAAGTCTTGGGAAACGAAATAAAGAGGGTCACAACCAGCTCAATAATCTCTTAAGAACTTGTGGTCATACCCTTTTCCAACTGAACATTTGGTTCTAGAGGAGATCAAATCTTCCAGAGCATAAATAGCACATTGAGGACCTTTGAAAGAGTGAAGATAGAATGTAACCTGACCAATGGACATCTAAAGAGATGGCATACTTGGCCATACCGAGCTTCCTCCAAAAAGTTCACCAGGAAGTTGCATTTAAGTTTGAAGGTTCATTTTTTTTCTTCTGATTCATTGCTTGATGGTCGTTTCTTGGCCACGATGGAGATATTTATGAAGTGTTAATGATGAATAAAATTCTATAGGAATTAAGATTTTAGGATATAAATTCTTTTCACTTCCAATATTAAAACTTCGTTTGGAAAGAGATGGTTTGTTTTATAATCCTCAATGTACAGTAGTCCCTACCATTTCAGAGTTTTATCAAGAGTAGGTAGAATACTTTCCACTTCTTGCAACTGATTCAAACAGTATTAAAATACGGAAGCAAAAGAAGTTTACTTGTGTGTTTGGTGTTCAGTGCTTCTGCCCCAAAAAACTTCCTCTTTCTTCTTGGTTACTCTAACTAGGTGTGGTGTGCGTCTTTTTTTCATAGTTTAGTACCTTGAATTCCTATCCTGATTACACCTCTTTTTCATGCCTGTTTCAGCATTATGGTCATTGCAATACTAAAAGGCAAGTCCATTTTATCTTAGTCTCAATTTATTTCTGAATTTAGATCTGCAAACCTGTAATTTTTTTTTTTAAAAAAATCTGTGAGCTGCAAACTTGTACTAATAGTTCACGTTGTGCATTACTTTAGTTTGCCGGTAGCAGAGCCTCATTGCTTCCTACAAGGGCACGATGGGCCTACATATGATGTCAAATTTTTTGATAATGGCGACAATACTTTATTACTGAGGTCTCTCTCTCTCTCTCTCTCCCAATACTAAATTAGTTTGAAGATGACACACTTGTTTTGTTCATGACTATCTTTTTACTCTTTAATTTCTTGGCCATTTCACTCTAGTACCATATTGGGTATCGTTAATTGTATTTTTCATCCCATCCCAATTATCTTAATGCTGACTCTAAAGCTAATTATAGCATCTATGCATGTATGAATGTTTATGCTTACTAATTTGTTAAATTATAGTTGGATGCAGAACCTGTTTTGTAGAAAATTAGAGCCAGTTGAAGCTTAATTCTGTTGGAGCTGAATAATTATCGGATCTTTATTATATTAACCTCCCAAAGCCTGCACTCATTGTTTTCTTAAAGTAATTGATTTGTACTAGTTTGAACTTCGACAACTGCCTAAATGATTTTGATTATTTATTGAATTTACATTCATTGAAGAATAAAGATATACCTATAGCCTGTTAAATTGATTTGAATGGCAAGATGGAAAGGGTAAAACTTGGGAATTTTTCTTGATTGAAATATCTGACTATTTGTGCACAACTTTTAGCTGTGGGGATGATGGCCACATTCGAGGATGGAGGTGGAGAGAATGTACAGATATAGAGGTGCCAATTGATTTGCAAGGTAATAACGTATGGACGTGTTTTCTGTAGTAGTAGTTTAGGTTTCATGACCCCCACGCCGGGGCAGCCTTTTCATCTGTTTTAGTGTTGTTTCGATATTTTAAAACTCCATTTTCTTGTTGTTTTCTCATTCATGTTTCCGTTTTAACTTGGTGTTTCATTTAAATTTCCAGTTGTTATAATACTCCATCCCTTTCTTTTTGTTCCAGGTAGTCATATTGAGCCTATAATAGACCTGATGAATCCTCAATCCAAGTAGGTTATCATTTTTTTACTTATTTTCTTGGCATTCGTTGGTGGATTTTCATAATGATTAGGTTATAAATATATATAATATTATACCATGAGCATTTACTAAATTAGACTTAAATTCTAATTTTTATTTTGATTCTTGTATTTTTAGCTTCGTCCATTTTGATTCTTACACTTTCAAAATGTTATTTTTAGTATCCGTATTTGGAGCTTTTATTCTTTTGGTTTTGGACTTTATGAAGCAGTCAGTTTTTAAATTACTTTGACTAAAATAGATATTTTGAAAATTCAGAGACTAAAATGGACCTTTGCGATCTTGTGAAGTTCATAACCTCTAATTGGAGTAGCCAACACAAATTATTTTGCAATTACACCACTATGTCATCAACTTAGATTAGAGGCCTTCTTGTAATTCCTTCGATTTGGGGACCCTTGTCGTCAGTGTTTTAAAAAGCGCAAAGCGTACTTAGGCGCAATGATTCTCTGGAGCATGAGGCGCAAGACGCACCAAAAGACGATGACTTTTTTACTCAAGGCGCACTATATAAAAAAAGCACAAAAAAATTATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTATACACAATAAAAACACTTTTCATGGTCATAAATGAAGTTTTAACCAAGAATAATACATAAAACATACATAATATTCAACTATCAACCTTCAAGCGCTTCGAATGACCTAGTACGGAGATTTAAAACACAAAAAAAAACAAAGGAAAATTAAAAATCCCACAAGGCGCGTGCCTTTTGGTGCCCTGGACTTCACGTAAGGCGCCATAATGTGCGCGCCTTATTACACACGCCTCACCTGGGACAAGCGAGGCGCAAAAGGTGGGACTGAAGCCCCCTTTTAAAACACTGCTTGTCCTGTTGCCTGTTAGGTTGTATAGTCGGTTGGTTTGTTTTTTTTTCCGAAGGAATGAGGTGGTTCTCATTTCCAATAAAAAAAAATGATGTTTAAAAAGTATAGAGACCAATATGGATAACAGCTACAAGAACCAGAACCTATAGAATATTAAATCTTAAAAAATAGTATTTAAATCTAAAATTTAATATCTTGTTGTTGATATTATTATGTGTGATTTCGGTGTGATTTTTGTCGGTTTTGTACCAAACCGACAACTGAACCAATATCTTCGGTTTTCAAAAAATGGATCCAATCCAATGTCCAATAAAGTATAGAATCATTGGTTCAGTTTTCAATTGGTTCGATTTGGTTTTGGATTCGATCCAATGTCCAATTTTGTTAATATATCAAAAAATACATTTCTCATAAAATTTTTTATCATAAACAACAATTTTTTTAAAGGTCGGAAGTACTTTTGAACTTATTGAAAATTATCTAAGAATGTTTTTTACTTGCAATATGCGTGAAATTAAAATTATTAAGGTACTTTCATTTGAAAATTTTATTGACATTTGAAGGATAAAAAAATATTTACTATAGGAGATTGATTTTCAAAACTTTAGGAAATCTTCTAAATAATGGAAGGAGGATGACTTTATATGACTTATTGACAATATATATTTCGGTTTGGTTCGGTTTTTATTGGTTTTTTTGAACGAAAATTGGAACCGATCCAATATTTTCAAATTACAAACCGACTGTCAAACTTTGTGCTAAAAAACCGATCCTATCCATTGGAATGGATTGGTTCGGTTCGATTTTTGGTTGCACCCCTAATATTATACTAGTAGAATAACCACTGGTCTTGTTTTGTGTTTCATGATATATATAATTTTAATATATAAGAAACAAACCCTAATACTTGATATATGTATCTGAAACTTTCCACGTGGAACATCAATCTAAACTTTCAAGCATTGTTCTCTTGACATCTTATGTAATCATCTGTAATCTATTTTGACTATTAATACAGTGGCCATTCTTTTAAAATGGTCAACATAAAACACAAGGATGTTTTTTTTTTTCTCTTTCTCTTTTCCATTGATTTTATGGCGTAACTTTATATTTGTCTAGTCTCGTTTTTACAAAATTATTATTTTTTTGATAGGAAACAAAATATTTGATTAATGTGTGAAATAGTTACAAAAAATGGGCATCACAGGAAACAATGCCAATTAGCAAACAAGTAACTAAGGCTATAATTACAATAAGGATGTAATCTTTTGCTCCAAAATAAAGCTATATGCAAAATAGAGTCAATAAGTCATTGAAGTGTAATTCATTTCTAGCCAACCATAATTTCCAAAATACTGCCGCAACAAAGTTATGCCAAAGGGCTGATAGACATGGATTTTTTTTTTCCCTTAGTGCATGTGATTATTCTCTAATAACCTTTTATATGTACCTGATTGCTATCTTCTAGAGGTCCTTGGGGTGCTCTTTCTCCAATCCCCGAAAATAATGCAATTGCTACCAATCCACAGGTTAATAATCTTTACCCAAACCCCCCCTCCACCTTTATTCTTATGCGGTGATATCTTATTTCATTTTGCAGAATGGATCCATATTTTCTGCTGCCGGAGATTCTTGTGCGTATTGTTGGGATTTGGTACGTGCATTTTAAGGTGGATGGTGTAGTATTTAGTTAACTGTAAGTTTCTGTAAGATACCCAACCTAAGGTTATATTAGTAATAAGGGTATTGTAAGGGTAGAAGGGTAATATTTTTTAGAGAAACCAAAGGCTTAACCCTAGAAATTTCTCCCTCTTGAGTATGCTAACTCAAGCCCATGCCTCTCCAAATACATTGATGCCTTTCTCCCCACTCCTCTACTCCTATTTATAACCCGTCATATTACCCTTCTACTCTTACAATACCCTTATTACTAATATAACCCTAGGTTGGGTGTCTTACCATTTTTTATTCAGATCTTTTTTTAAAGCCAAGAGTTAAAGTTCCTCCTAACACTTGCTTAGTTTCTGGCTTTTTGTATTTAAAATTTTCAGGAGAGCGGTAAAATTAAGACGACGTTTAAGGGGCACTCTGACTACTTGCACTGTATAGTTGCCCGGAACACTGTCAATCAAGTACTTCTTTCCTTAAACCTTTTTTGTATTTTGTATAGACTAAGACTAGCATAATTTCTTCTTTTGTCTTTACTGTAGTCGTCCTCCAGACAGATTAACTAGGGGCTGTTGGTTTGACATATTTAGGTAGTATTTGGGTTAAGGAGTTATATTGAGTAGTTAAAAATTGAGAGTTGTCAAAAACTCGTTTGGATGTACTTTTTGTGTAGAGGAGTTAGAGTCAAAACCTTGTTTGGATGTAGATTTAGAAATGAGTAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATGAGTTATTTTGATTGATTTGTAATGAATGATTAAAAATAAGTGGTTAGAAATGATTGAGTAGTTATAAATGAATGATTAAAAAATGAATGGTTAGAAATGAGAGTTATTTTTAAAAGTAAAAATGAGGAGGAGTTAATAAAAACTCGTTTGGTTGTAGATTTTCGAGTAAGAGTTAATAAATCCTAAAACTAACTCCTACCTAAATATGGCAAACAAACAGCCCCGTAATGATTAAAAAAGAATGTTATTTCATCGATGTACACTGACACAAACAAAAAGGAATTGGGAGTCAATGCATAAGATAGTTGGGATGAAGGTCTTGAAGTTGCAGGAAGTTACGGGAACAAATTGAAGAACCAAGGGTGTCTTGGACTCTTGAAGAAAAGCGGAGTTTTCGAGAGATTTTCAACTCTCCTCGGAAACTCATTTCTCCCGACTAAAATCTTTCTTACTTTCACCATTGGTTACTTATCTTCCTTTATCTTAACTTTATTCTCACCCTACACTGTTCTTCACAACCCCGAGTCTTAGTGATCGTCACCAAACGTTTGTTGGGAGATTTACCCTCTGACCAACTTCCCTTCGTAATATCTCCTCCATCATCTCATTTATTGCCTCCAGCCTTGTGTTCCACGTTCATATACGTTAATGAATTGGGGGTTTATTGTTGTGTCGCCTAGTTTCTCTTTGAATAATAGCTAGGTAAACCGTAAGCAAGTAGTAGTTATGACATTTCCTGTATAACAATGGGAAGCATGATTTTTTTTTTGATATCCGTGACTGTCCGGGCCAGCTTGCATGCACTTTGACTATTATCACCCAGCTTGCATGTACTTTGATTGTTACTATCGGACATGCTATCTAATCCTACAACATTTGAATTTGAAGGAAACCCGGTGGAAATTATTTTCTAGGTAGGTAGCCACTATGGATAAAACCCATCCCCTCTTAATTCCTCTAGGCCCTCTCGGAAAGCATGAAATTCTTGGGATTTACTTCTAAGTTTTTTTGCCTCATTGTTCCATGTTCTGCCGCCAACTAGCACTATACTGGCTAAATGCTACTACTGATTTCCTGCAAGAAAAAGCAAAGATACTTTTTTTTTTGTTATTATTGGTGGTTCACTTCTATACAAAATTATTATATCTCCATTTGGTAAAGCTTTCGTTTCAGTTTTATGTTTGGAAACATGTGATGATTTTAATCATTGGCTTTCTGAACTATACTTTTCATGTATTTCCACCTTATTGTTTTCATCCTTTGAATTCCAGATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGGTAGGGAAACTATTTATTTATTTAATATATATGTGTGTGTATATATATCTATTGATCTTAAGCAGGAGGTTATGCATCAACATTAGTCATTTTCTACATGCACTCGTGTCATGTTTATTTCAAAATTCTATTCGAACAACCATAAATTTATTGAGCGAAAATGTAGTTTAGTATAGTGGTGAAACCTTTCCAAGGAGAGCCCCGTTTTGAATTCTCTTTGATTGTCCGTCATCAATGAATTTGTAGTTTCTACATTTTTACCTGGTAAATGTAAGTCGAACATTTTTTGGTATATATAAATTATAAGAGCAAAGTTTTGTATCCTATGTGTTTCTTTAAAAGGATTTTATTTTATACATTTATACTACCAAACCAGATTGCAAGAGTGGAAAGTGCATTCAACTAATTGACCAAGCTAAGGATCAGCAGCAGAAAGGGCACTTCTCATGTATTAGGTGCATTGCTCTTGATGCGAGTGAAAGCTGGTTGGTATGTGTTTACTAATGATCAGGATATTCCCCATTTGTTCTTTGCATTGTGACTATTGTCTATAGTTGGTATTTACTTCTAGATTTGGATACGTGCTTTTGCGCAGCTGTTATCTTATTTTGTTGTTTGGTCTGTTTTCTATCCTTCATCATTCTTGAGTTATGTTATTCTGTTGATCTTGTTTCCCATTAAAATAATACTCTGTTTGGATCCACCACTGGATTCTAATAATTCTATCCATTCGGATTCTCTTCAAAAGGAACATTCTAGTGATGCATACCAATAATATCCCATCAAGCAAGACTACCTGCTTGGCTTTTGTTCTCATTTATCATGTTGATTCTCGCTAGAGCTACATCTTCAGCTAATCTTCAAACCAAAGACCATCTCGAGCAAATATGTCACTTTCAACAAGTTGAAAAAGCTTTCTTTCTTTAGCTACACCATAAGAAAGCATCGGCAAGTGCAATGGTTTATATTTATTTTATCCTTTCTCCAGTTAACCGGTAAACTCATCAGTTGCAAATACTGAATAGAAAAGGAGGATATTTGACCTCATCTTAGCCTCTAGTTTCTTATTCTTCCGTTGGTTTTCCGTTCAAGAAAAAAAAAACTTCGTATTTGCAATACGGTCATAAAACAACCTCACCCACTTTTTGAAACAAGAGAAACTTTTGATTAAGGGTATGAAAAAAACATGATGTTCAGAATACAAAGCAAATAGGAAAAAGAGACGAAACAAAAAACGATACAAAGAACTATAAGAAAGCGTGCCAATTGTTACAAATATCCTTGCAGCCCATGAAAGATGAGTGTCCTTGAAAACTTGCTGGTTTCTAGCCCACCATAATCCATTATCCATATAAGAGAAAAGCTCGTTTATTAAGGAACAACCTCACCCACTTTTTGCTAACGGCCTTATTTTGAAGATGGCTTGTAGTAAATTTTAACTGACAAGCCACATGCCTTTTATAAATCAATCTTCAACTTCCATCCCTCAGAAATTCTCCATTCATCAACACTCCGAGGCTCGTTTTCTTAAACTAATAAGTCTGTACACAAGGACTTTGGATATGATTTGTACACACTAGTTAGTTACCAAGCTAACTGGTCAAAACTTCCATTCTACATGATTTCAGCCTTTTGACTAATTAAACTAATGAAGTTTTTTTTCATAATCATAATGAACTTGTTTCTTATCCAAAAATAAACTAATGAAGTTTTTTTTTAAACAAGAAACAAACTTTTCATTAAGTAAATGAAAAGGAGCAGAAGCTTCAGAAACAATTTCCAGAGGAATATACTGAGATATGCCTCTCAAAGAGGGAAAGATAACAACAAAATAAAATAATGAACAAAATACCACTTCTAAGCCTAAAAATAATAAACTGAAACAAAACAAGCTATATGCTTAAGCTAAAAGACTAAAAAAACAAAATCCGCTATGCTTGAGACTATGAGGAAGACTGAGAGGCCATTAGTAGCTAAGAAGCTGAAATAGGAGCTTCCAAATTCAATCCTCAATCTTTAAAGACCATGAAATCTGAGGGAATCAACTTCCAGAAAGCCATATTGATAAACTGCTAAAAAATAGAGTTTTGACTTAATCCTGCCAAACCAAGCAAATGAAAATTTTGTTCATACACAAATTTGGGATCCCATCCTTGAAAACAGCTTGGTTCACCTCGAGCATGTCACTTGTAATAATATATTTTTTATTATTATTATCATTATCAATGTTCTAAAAATTGGTCGAGTAAAAAGCCTCGAGGCTTATGCCTTGATAGTGAAAAATGAGGCTTACGCCTCTTTGAATAGAGGCTAACGCCTCTGAGGCTTAAAGGCGTAAGACTTTTGTTCTTTACATTCTGTGTGAATAATTTAAAGTATCTAACTTAAATGAAGAAGGTGGGCCATCTTTATGACCCAAATATTGATAAAAAATGTATCAATTAAGTTGTTTTAAAGGATAAATACCATTAGTTAATCTAAAAAACAAAAGGCTGCCACTTATATTAATGGATTGAAACCCAAGCCACCGCTTTTCAAAACAAGATGGAGGTGTCTCCCTTCCTTTGAGTCTTTGACAGTACCACCTTTCTTTTCTTATTCACTTCTTTTTCTGTCTTTTTTTTTTGACAAAATCAACATATTTTGTCTTTCCTTTATGGTTTAAAAAAAAAAAAAAAAATCTCTTCATTTATTATTATTCTGTTATTCTATTTTACCAATGATGTTCAATTATTTCTTCTTTGTTTTTTTTTCCTCATTATTATTATTACTATTAGTTTTCACTTAATTCTTTTTATAATTATGTTTAAAATCAGTTTGTTTTCTTTTCTGTTTTTTAATTAATAGAACACCCGATTTATTATGTCTTCTCGAGCTTTTTTTTGTACTTTTTTTAAATTTCTGTTTAATGTATTTTTTGTTTTCTTCTTCTTATTATTATTTTTACACATTCTATTTTTTTGTGTACTTTTAAGGGGGGTATTACTATGTTATAACTTATAGAATTTAAAAAAAGGTTATGTTTTATGCTTTAAATATGTATTTTTCAATCTAAAATGAGGCTTACGCCTCATACCGCCTTGAGGCTTACGCCTCGCCTTGAGATGAGAAAACGCCTCGAAACCGCCTTAAGCCTTTTAAAACATTGATCGTTATATTTTTATAATTTCAGTTCTCTTTGATATTCATTTGCTGCATTTTATTTTAGGCCTGTGCTGATGGTCGGAGTTTATCAGTTTGGAACCTTCCATCTTCGGAACTTGTTTCAAAAACTTTGACCCGTTATTCAATCCAGGACATGGTTTTTTGTGATAATCAAGTGAGTGATTCTCCTTCTTGAACCGATCATTTCTTTAATTGATTGGCACTAGCCTGCAATTTAGGTTCAGAAATATGTCATCATGTTTTTATATTTCTTTAGATGTTCATCCAGAAATATATAAATATTTTCAATTGCCTCTATGATTTAGTTCAAGAAAAAAGTCGTTTTATGCAACTATTGTTGACATACAAAGTTAAGAAGCATGCACATATGGCCATAATACGACATGAGCATGGCAAGGGGATATCTAGAATATATCAAATGCTGTTATCTTAATATCTCATGTTAGGTCAGATTTTTCTGATACCATTTTATGTTAATTGTTGTCTCTCCATGTCCAGATACTAGGTGTTGGAGCAGAGCCGTTACTAACTCGATTCGACGTACATGGATCAATTCTTTCACAAATACAATGTGCCCCTCAGTCAGCCTTTTCTGTCGCCTTGCATCCGTCCAGCGTATGTTTACTCTATTCCTTTTATCCTTTGGTTTACCATTAGTCTTCCCTTTAGAACCTTTTTTTTCTCACAATTTTAGCTTGACATTATGGGAAGATTAGAAGTTACCAATTCCTCGGAATCAATTATTGGGTCCCGAAGCCAACTCAAATAGAGCAACTAGACTTGTCACTGAACTAAAAAAAAAAAAAACGAAGGCCGTGTCTGATTACTATTTGGTTTTTTAAATTTAAGGTTGTATTTACTTAAATCATCTACATATGGTTTGTCCCCAAGGGGTGACACAATGGATGAAAACTTGGGCTTTGAGGGTATGCTCCCCTTAAGATTCCAAGTTCGAGACTCAGCTGTGACATTACTCCTTCGATGTCTTCTGGTGTCTGGCCTAGGGACGGTCGTGGTTACCCTTGTTTAAAAAAAATCATCTACATATGGTTTCATCTTCCCTTAAAGAAGTATGTGAATCCAAATCAAATTCCACAAACCAAAACAAGTATTTTTTTTTAAACAAGGGTAACCACGTCCGTCCCTAAGCTAGACACCAAAACCAAAACAAGTATTTGGAAACAATTTTTTTACTAATCAAATTTTGGTTTGATTTTTAAAAACATGAGTAAAATGTAGACGTCAAACTATTGAAAACCATAGGTTAGAGTAGTAGTTATAGGCTTAAATTTTAAAAATCAAATACTAAAAATCAAATGATTATCAAACATGGTCTAAACTTGTCACCTCTGTATGCAGACCTTGGCGATCACTTTAGTTTTGATGCATCTTCCTGTTATCTCATTTTGTAATCTTATACCACTGAGCAACTAATTCAATCATGCCAAAATCTGTTAACATTCAATTTCATGCTTAATTCTTACTTGGTGAATTATACCATAACTGTATGTTGGTTTTCATATCACCATATCTTATCAAATGGTCATGTGATTGTGCTTCATTCCTCTATGCTTCTCTCACTTTTGGATAGTTTATTCATCGGTTCAGGTCGCAGCAGTCGGAGGCTATGGTGGTCTCGTTGACGTTATCTCGCAGTTTGGAAGCCATTTATGTACATTCTGCTGTCAATACAGATGAATGGATATAATGAATTGCTTTACTGCAGGAATTGAGGAGGATGTTGGAAATCTGTAGGTACCGTATTTGCTTCACAATTGACCAAGAAACATTTTTCTTGGGTAGCTAACTTTTAGTTTACCTGCGTAGAAACTTCTTTCTTGGATAGATACACTTTTAGGAGTGAAAAATGTACGTACTCTTTGACTTTTTGACGTACTAGAGGCACGACCGATATTTTTTTTAGTATAACAATATTTGAGGTTGGAAGATTCGAATTTGCGAC

mRNA sequence

GATGGGTAAATGTTAGGACACTACATGATTCCCCTTCACGACTGAGACAGCCAATTGCATCTATAAGTTCCTCCGGCGAGTCGTTGAAGGCCGTTTTCAGATTATCCGCCGCATTTTCTGGCTCTAACGCCGCCGCCGCATCGTCGTTCCTAGCTTCGCCATTGTCGTTTCAAACAAACATTTAGGAGTTCGGAAAAGTAGTCGTAGCAAGCGGTAGCAAAATGCTGGCGGACGCGACGAATTGGGACGAAGATGCTTACAGAGGGACTATACACAGAGAAATAGAGGTCCAGACTCGGACTGTGTTCAGAACTGCTTGGGCGCCGTCTTCTAATGGTTCCCCTGAGACCGTCGTGGTCGGCTCCAGTGATGGATCCATTGCGTCTTATTCCATCGCTTCCTGCATCTCTAAGCTGCATTATGGTCATTGCAATACTAAAAGTTTGCCGGTAGCAGAGCCTCATTGCTTCCTACAAGGGCACGATGGGCCTACATATGATGTCAAATTTTTTGATAATGGCGACAATACTTTATTACTGAGCTGTGGGGATGATGGCCACATTCGAGGATGGAGGTGGAGAGAATGTACAGATATAGAGGTGCCAATTGATTTGCAAGGTAGTCATATTGAGCCTATAATAGACCTGATGAATCCTCAATCCAAAGGTCCTTGGGGTGCTCTTTCTCCAATCCCCGAAAATAATGCAATTGCTACCAATCCACAGAATGGATCCATATTTTCTGCTGCCGGAGATTCTTGTGCGTATTGTTGGGATTTGGAGAGCGGTAAAATTAAGACGACGTTTAAGGGGCACTCTGACTACTTGCACTGTATAGTTGCCCGGAACACTGTCAATCAAATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGATTGCAAGAGTGGAAAGTGCATTCAACTAATTGACCAAGCTAAGGATCAGCAGCAGAAAGGGCACTTCTCATGTATTAGGTGCATTGCTCTTGATGCGAGTGAAAGCTGGTTGGCCTGTGCTGATGGTCGGAGTTTATCAGTTTGGAACCTTCCATCTTCGGAACTTGTTTCAAAAACTTTGACCCGTTATTCAATCCAGGACATGGTTTTTTGTGATAATCAAATACTAGGTGTTGGAGCAGAGCCGTTACTAACTCGATTCGACGTACATGGATCAATTCTTTCACAAATACAATGTGCCCCTCAGTCAGCCTTTTCTGTCGCCTTGCATCCGTCCAGCGTCGCAGCAGTCGGAGGCTATGGTGGTCTCGTTGACGTTATCTCGCAGTTTGGAAGCCATTTATGTACATTCTGCTGTCAATACAGATGAATGGATATAATGAATTGCTTTACTGCAGGAATTGAGGAGGATGTTGGAAATCTGTAGGTACCGTATTTGCTTCACAATTGACCAAGAAACATTTTTCTTGGGTAGCTAACTTTTAGTTTACCTGCGTAGAAACTTCTTTCTTGGATAGATACACTTTTAGGAGTGAAAAATGTACGTACTCTTTGACTTTTTGACGTACTAGAGGCACGACCGATATTTTTTTTAGTATAACAATATTTGAGGTTGGAAGATTCGAATTTGCGAC

Coding sequence (CDS)

ATGCTGGCGGACGCGACGAATTGGGACGAAGATGCTTACAGAGGGACTATACACAGAGAAATAGAGGTCCAGACTCGGACTGTGTTCAGAACTGCTTGGGCGCCGTCTTCTAATGGTTCCCCTGAGACCGTCGTGGTCGGCTCCAGTGATGGATCCATTGCGTCTTATTCCATCGCTTCCTGCATCTCTAAGCTGCATTATGGTCATTGCAATACTAAAAGTTTGCCGGTAGCAGAGCCTCATTGCTTCCTACAAGGGCACGATGGGCCTACATATGATGTCAAATTTTTTGATAATGGCGACAATACTTTATTACTGAGCTGTGGGGATGATGGCCACATTCGAGGATGGAGGTGGAGAGAATGTACAGATATAGAGGTGCCAATTGATTTGCAAGGTAGTCATATTGAGCCTATAATAGACCTGATGAATCCTCAATCCAAAGGTCCTTGGGGTGCTCTTTCTCCAATCCCCGAAAATAATGCAATTGCTACCAATCCACAGAATGGATCCATATTTTCTGCTGCCGGAGATTCTTGTGCGTATTGTTGGGATTTGGAGAGCGGTAAAATTAAGACGACGTTTAAGGGGCACTCTGACTACTTGCACTGTATAGTTGCCCGGAACACTGTCAATCAAATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGATTGCAAGAGTGGAAAGTGCATTCAACTAATTGACCAAGCTAAGGATCAGCAGCAGAAAGGGCACTTCTCATGTATTAGGTGCATTGCTCTTGATGCGAGTGAAAGCTGGTTGGCCTGTGCTGATGGTCGGAGTTTATCAGTTTGGAACCTTCCATCTTCGGAACTTGTTTCAAAAACTTTGACCCGTTATTCAATCCAGGACATGGTTTTTTGTGATAATCAAATACTAGGTGTTGGAGCAGAGCCGTTACTAACTCGATTCGACGTACATGGATCAATTCTTTCACAAATACAATGTGCCCCTCAGTCAGCCTTTTCTGTCGCCTTGCATCCGTCCAGCGTCGCAGCAGTCGGAGGCTATGGTGGTCTCGTTGACGTTATCTCGCAGTTTGGAAGCCATTTATGTACATTCTGCTGTCAATACAGATGA

Protein sequence

MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIASCISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWRECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQAKDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDNQILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSHLCTFCCQYR

Homology

[Close]

BLAST of Sed0022183.1 vs. NCBI nr
Match: XP_038880261.1 (THO complex subunit 6 isoform X4 [Benincasa hispida] >XP_038880262.1 THO complex subunit 6 isoform X4 [Benincasa hispida])

HSP 1 Score: 696.0 bits (1795), Expect = 1.7e-196
Identity = 324/369 (87.80%), Postives = 347/369 (94.04%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           MLADATNWDE AYR +I++E E+QTRTVFRTAWAPS NG PET+V  SSDGSIASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSIASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLH+G+ NT+SL  AEPHCFLQGHDGP YDVKF+DNG+NTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLHFGYGNTRSLLAAEPHCFLQGHDGPAYDVKFYDNGNNTLLLSCGDDGHIRGWRWR 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           ECTDIEVPI LQGSHIEP++DLMNPQ KGPWGALSP+PENNAIA++ Q+GSIFSAAGDSC
Sbjct: 121 ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPMPENNAIASDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGKIK  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID A
Sbjct: 181 AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDN 300
           KD++ KGHFSCIRCIALDASESWLACADGRSLSVWNLPSSE +SKTLTR S+QDMVFCDN
Sbjct: 241 KDKKLKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSMQDMVFCDN 300

Query: 301 QILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEP LTRFD++GS+LSQIQCAPQSAFSVALHPS VAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of Sed0022183.1 vs. NCBI nr
Match: XP_008450878.1 (PREDICTED: THO complex subunit 6 [Cucumis melo] >KAA0055809.1 THO complex subunit 6 [Cucumis melo var. makuwa] >TYK10060.1 THO complex subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 694.1 bits (1790), Expect = 6.4e-196
Identity = 322/369 (87.26%), Postives = 346/369 (93.77%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           MLADATNWDE AYR +I++E E+QTRTVFRTAWAPS NG PET+V  SSDGS+ASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL +G+ NTKSL  AEPHCFLQGHDGPTYDVKF+DNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPHCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           +CTDIEVPI LQGSHIEP++DLMNPQ KGPWGALSPIPENNAIAT+ Q+GSIFSAAGDSC
Sbjct: 121 DCTDIEVPIYLQGSHIEPVMDLMNPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGK+K  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID A
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDN 300
           KD++ KGHFS +RCIALDASESWLACADGRSLSVWNLPSSE +SKTLTR S+QDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEP LTRFD++GS+LSQIQCAPQSAFSVALHPS VAAVGGYGGL+DVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of Sed0022183.1 vs. NCBI nr
Match: XP_022934010.1 (THO complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 689.5 bits (1778), Expect = 1.6e-194
Identity = 322/370 (87.03%), Postives = 347/370 (93.78%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           ML DATNWDEDAYR ++++E EVQTRTVFRTAWAPS +G PE++VV SSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLH G+ NTKSL  AEPHCFLQGHDGPTYDVKFFD GDNTLLLSCGDDGHIRGWRW 
Sbjct: 61  CISKLHSGYGNTKSLLAAEPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWN 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           ECTDIEVPI LQGSHIEP++DLMNPQ KGPWGALSPIPENNAIATN Q+GSIFSAAGDSC
Sbjct: 121 ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGKIK  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCK+GKCIQL+D A
Sbjct: 181 AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKTGKCIQLLDPA 240

Query: 241 KD-QQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCD 300
           KD ++QKG+FSC+RCIALDASESWLACADGRS SVWNLP+S+ +S+TLTR S+QDMVFCD
Sbjct: 241 KDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCD 300

Query: 301 NQILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGS 360
           NQILGVGAEPLLTRFD+HGSILS+IQCAPQSAFSVA+HPS VAAVGGYGGLVDVISQFGS
Sbjct: 301 NQILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGS 360

Query: 361 HLCTFCCQYR 370
           HLCTFCCQYR
Sbjct: 361 HLCTFCCQYR 370

[Close]

BLAST of Sed0022183.1 vs. NCBI nr
Match: XP_023531243.1 (THO complex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 688.0 bits (1774), Expect = 4.6e-194
Identity = 321/370 (86.76%), Postives = 347/370 (93.78%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           ML DATNWDEDAYR ++++E EVQTRTVFRTAWAPS +G PE++VV SSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLH G+ NTKSL  AEPHCFLQGHDGP YDVKFFD GDNTLLLSCGDDGHIRGW+W+
Sbjct: 61  CISKLHSGYGNTKSLLAAEPHCFLQGHDGPAYDVKFFDAGDNTLLLSCGDDGHIRGWKWK 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           ECTDIEVPI LQGSHIEP++DLMNPQ KGPWGALSPIPENNAIATN Q+GSIFSAAGDSC
Sbjct: 121 ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGKIK  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCK+GKCIQLID A
Sbjct: 181 AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKTGKCIQLIDPA 240

Query: 241 KD-QQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCD 300
           KD ++QKG+FSC+RCIALDASESWLACADGRS SVWNLP+S+ +S+TLTR S+QDMVFCD
Sbjct: 241 KDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCD 300

Query: 301 NQILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGS 360
           NQILGVGAEPLLTRFD+HGSILS+IQCAPQSAFSVA+HPS VAAVGGYGGLVDVISQFGS
Sbjct: 301 NQILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGS 360

Query: 361 HLCTFCCQYR 370
           HLCTFCCQYR
Sbjct: 361 HLCTFCCQYR 370

[Close]

BLAST of Sed0022183.1 vs. NCBI nr
Match: XP_004144008.1 (THO complex subunit 6 [Cucumis sativus] >KGN66260.1 hypothetical protein Csa_007648 [Cucumis sativus])

HSP 1 Score: 687.6 bits (1773), Expect = 6.0e-194
Identity = 318/369 (86.18%), Postives = 345/369 (93.50%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           ML DATNWDE AYR +I++E E+QTRTVFRTAWAPS NG PET+V  SSDGS+ASYSIAS
Sbjct: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL +G+ NTKSL  AEP+CFLQGHDGPTYDVKF+DNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           +CTDI+VPI LQGSHIEP++DL+NPQ KGPWGALSPIPENNAIAT+ Q+GSIFSAAGDSC
Sbjct: 121 DCTDIKVPISLQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGK+K  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID A
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDN 300
           KD++ KGHFS +RCIALDASESWLACADGRS+SVWNLPSSE +SKTLTR S+QDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEP LTRFD++GS+LSQIQCAPQSAFSVALHPS VAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of Sed0022183.1 vs. ExPASy Swiss-Prot
Match: Q8L4M1 (THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 2.1e-128
Identity = 210/366 (57.38%), Postives = 284/366 (77.60%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSN-GSPETVVVGSSDGSIASYSIA 60
           M  DATNW+ED YR +I +E E++TRTVFRTAWAP +   +P+  VV SSDG++A +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 61  SCISK-LHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWR 120
           S +S+   +G+   + + VAEP   ++ H+GP YDVKF+   ++ LLLSCGDDG +RGW+
Sbjct: 61  SLVSQSASFGYSKGQDVMVAEPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGWK 120

Query: 121 WRECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGD 180
           WRE  + +V + L+ +H++P+++L+NPQ KGPWGALSP+PE NA++ +PQ+GS+F+AAGD
Sbjct: 121 WREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAGD 180

Query: 181 SCAYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID 240
           SCAYCWD+ESGKIK TFKGHSDYLH +V+R++ +QI+TGSEDGTARIWDCK+GKC+++I 
Sbjct: 181 SCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI- 240

Query: 241 QAKDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFC 300
                Q K     +  +ALD SESWL C  G++L++WNLP+SE V        +QD++F 
Sbjct: 241 ---GSQDKKSRLRVSSMALDGSESWLVCGQGKNLALWNLPASECVQTIPIPAHVQDVMFD 300

Query: 301 DNQILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFG 360
           + QIL VGAEPLL RFD++G++LSQI CAP S FS++LHP+ V AVGGYGG+VDVISQFG
Sbjct: 301 EKQILTVGAEPLLRRFDLNGALLSQIHCAPCSVFSISLHPAGVVAVGGYGGIVDVISQFG 360

Query: 361 SHLCTF 365
           SHLCTF
Sbjct: 361 SHLCTF 362

[Close]

BLAST of Sed0022183.1 vs. ExPASy Swiss-Prot
Match: Q5XJS5 (THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.4e-30
Identity = 95/351 (27.07%), Postives = 162/351 (46.15%), Query Frame = 0


Query: 21  IEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIASCISKLHYGHCNTKSLPVAEP 80
           +E+   +VF  +++P        +  G++ G IA +S+++ +S          S    +P
Sbjct: 4   VELLHMSVFSQSFSPCG----RYLAAGNNYGEIAVFSLSAALSP-------DASERSQKP 63

Query: 81  HCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWRECTDIEVPIDLQGSHIEPII 140
                 HDGP + +        + LLS G +G I  W W E                   
Sbjct: 64  ILNFTAHDGPVFSLL----STESHLLSAG-NGEISAWSWAE------------------- 123

Query: 141 DLMNPQSKGPW------GALSPIPENNAIATNPQNGSIFSAAGDSCAYCWDLESGKIKTT 200
            L+   +K  W           IPE NA+  NP++ ++    GD+  +  D+E+G  K+ 
Sbjct: 124 -LIKKSTKAAWTRKPNYETSLEIPEINAMIINPKDNNLIVGGGDNNIHIMDMETGTFKSV 183

Query: 201 FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQAKDQQ----QKGHFS 260
            KGH+DY+HC+  +    +I++G EDG  RIWD ++ + +  I+  K ++    Q G + 
Sbjct: 184 LKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKW- 243

Query: 261 CIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDNQILGVGAEPL 320
            I C+A D+   W+ C  G SLS+W+L S    S        ++ V   + I+ VG  P 
Sbjct: 244 -ISCLATDS--DWMLCGGGPSLSLWHLRSMSPTSVFPLSGCQREAVSYQDLIMSVGEGPY 303

Query: 321 LTRFDVHGSILSQIQCAPQSAFSVALHPSS----VAAVGGYGGLVDVISQF 358
           ++     G++ +QI C+P S  ++AL+  +    V  VGG    +DV + F
Sbjct: 304 VSHCLHGGTVKAQIPCSPSSLNTLALNLKNTEHRVMTVGGSSHQIDVFTNF 314

[Close]

BLAST of Sed0022183.1 vs. ExPASy Swiss-Prot
Match: Q86W42 (THO complex subunit 6 homolog OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.2e-28
Identity = 87/336 (25.89%), Postives = 152/336 (45.24%), Query Frame = 0


Query: 31  TAWAPSSNGSPETVVVGSSDGSIASYSIASCISKLHYGHCNTKSLPVAEPHCFLQGHDGP 90
           T ++ S +   + +  G++ G IA +S++S +S       +       +P    Q HDGP
Sbjct: 26  TIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALS-------SEAKEESKKPVVTFQAHDGP 85

Query: 91  TYDVKFFDNGDNTLLLSCGDDGHIRGWRWRECTDIEVPIDLQGSHIEPIIDLMNPQSKGP 150
            Y +   D      LLS G DG ++ W W E               +   +L   Q   P
Sbjct: 86  VYSMVSTDRH----LLSAG-DGEVKAWLWAEMLK------------KGCKELWRRQP--P 145

Query: 151 WGALSPIPENNAIATNPQNGSIFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNT 210
           +     +PE NA+   P+  S+  A GD   +  DLE+G      +GH+DY+HC+  R  
Sbjct: 146 YRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGHTDYIHCLALRER 205

Query: 211 VNQIITGSEDGTARIWDCKSGKCIQLIDQAKDQQ--QKGHFSCIRCIALDASESWLACAD 270
             ++++G EDG  R+WD ++ K +Q I+  K ++  +  +   I C+A D+   W+ C  
Sbjct: 206 SPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGG 265

Query: 271 GRSLSVWNLPSSELVSKTLTRYSIQDMVFCDNQILGVGAEPLLTRFDVHGSILSQIQCAP 330
           G +L++W+L SS   +    R   + + F  + IL  G    + ++ + G + +Q+  + 
Sbjct: 266 GPALTLWHLRSSTPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSS 325

Query: 331 QSAFSVALHPS------SVAAVGGYGGLVDVISQFG 359
               S++L+         V    G    VDV +  G
Sbjct: 326 PGLLSLSLNQQPAAPECKVLTAAGNSCRVDVFTNLG 333

[Close]

BLAST of Sed0022183.1 vs. ExPASy Swiss-Prot
Match: Q5U4D9 (THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-27
Identity = 86/336 (25.60%), Postives = 150/336 (44.64%), Query Frame = 0


Query: 31  TAWAPSSNGSPETVVVGSSDGSIASYSIASCISKLHYGHCNTKSLPVAEPHCFLQGHDGP 90
           T ++ S +   + +  G++ G IA +S+++ +S       +       +P      HDGP
Sbjct: 26  TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS-------SEAKEESKKPVVVFHAHDGP 85

Query: 91  TYDVKFFDNGDNTLLLSCGDDGHIRGWRWRECTDIEVPIDLQGSHIEPIIDLMNPQSKGP 150
            Y +   D      LLS G DG ++GW W E               +   +L   Q   P
Sbjct: 86  VYSMVSTDRH----LLSAG-DGEVKGWLWAEILK------------KGCKELWRRQP--P 145

Query: 151 WGALSPIPENNAIATNPQNGSIFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNT 210
           +     +PE NA+   P+  S+  A GD   +  DLE+G      +GH+DY+HC+  R  
Sbjct: 146 YRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETGAFTRALRGHTDYIHCLALRER 205

Query: 211 VNQIITGSEDGTARIWDCKSGKCIQLIDQAKDQQ--QKGHFSCIRCIALDASESWLACAD 270
             ++++G EDG  R+WD +  K +Q I+  K ++  +  +   I C+A D+   W+ C  
Sbjct: 206 SPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGG 265

Query: 271 GRSLSVWNLPSSELVSKTLTRYSIQDMVFCDNQILGVGAEPLLTRFDVHGSILSQIQCAP 330
           G +L++W+L SS   +    R   + + F  + IL  G    +  + + G + +Q+  + 
Sbjct: 266 GPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSS 325

Query: 331 QSAFSVALHPS------SVAAVGGYGGLVDVISQFG 359
               S++L+         V    G    VDV +  G
Sbjct: 326 PGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333

[Close]

BLAST of Sed0022183.1 vs. ExPASy Swiss-Prot
Match: Q6AY87 (THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-27
Identity = 86/336 (25.60%), Postives = 150/336 (44.64%), Query Frame = 0


Query: 31  TAWAPSSNGSPETVVVGSSDGSIASYSIASCISKLHYGHCNTKSLPVAEPHCFLQGHDGP 90
           T ++ S +   + +  G++ G IA +S+++ +S       +       +P      HDGP
Sbjct: 26  TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS-------SEAKEESKKPMVTFHAHDGP 85

Query: 91  TYDVKFFDNGDNTLLLSCGDDGHIRGWRWRECTDIEVPIDLQGSHIEPIIDLMNPQSKGP 150
            Y +   D      LLS G DG ++GW W E               +   +L   Q   P
Sbjct: 86  VYSMVSTDRH----LLSAG-DGEVKGWLWAEILK------------KGCKELWRRQP--P 145

Query: 151 WGALSPIPENNAIATNPQNGSIFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNT 210
           +     +PE NA+   P+  S+  A GD   +  DLE+G      +GH+DY+HC+  R  
Sbjct: 146 YRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRER 205

Query: 211 VNQIITGSEDGTARIWDCKSGKCIQLIDQAKDQQ--QKGHFSCIRCIALDASESWLACAD 270
             ++++G EDG  R+WD +  K +Q I+  K ++  +  +   I C+A D+   W+ C  
Sbjct: 206 SPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGG 265

Query: 271 GRSLSVWNLPSSELVSKTLTRYSIQDMVFCDNQILGVGAEPLLTRFDVHGSILSQIQCAP 330
           G +L++W+L SS   +    R   + + F  + IL  G    +  + + G + +Q+  + 
Sbjct: 266 GPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSS 325

Query: 331 QSAFSVALHPS------SVAAVGGYGGLVDVISQFG 359
               S++L+         V    G    VDV +  G
Sbjct: 326 PGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333

[Close]

BLAST of Sed0022183.1 vs. ExPASy TrEMBL
Match: A0A5A7UQQ6 (THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001940 PE=3 SV=1)

HSP 1 Score: 694.1 bits (1790), Expect = 3.1e-196
Identity = 322/369 (87.26%), Postives = 346/369 (93.77%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           MLADATNWDE AYR +I++E E+QTRTVFRTAWAPS NG PET+V  SSDGS+ASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL +G+ NTKSL  AEPHCFLQGHDGPTYDVKF+DNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPHCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           +CTDIEVPI LQGSHIEP++DLMNPQ KGPWGALSPIPENNAIAT+ Q+GSIFSAAGDSC
Sbjct: 121 DCTDIEVPIYLQGSHIEPVMDLMNPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGK+K  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID A
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDN 300
           KD++ KGHFS +RCIALDASESWLACADGRSLSVWNLPSSE +SKTLTR S+QDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEP LTRFD++GS+LSQIQCAPQSAFSVALHPS VAAVGGYGGL+DVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of Sed0022183.1 vs. ExPASy TrEMBL
Match: A0A1S3BQ99 (THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1)

HSP 1 Score: 694.1 bits (1790), Expect = 3.1e-196
Identity = 322/369 (87.26%), Postives = 346/369 (93.77%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           MLADATNWDE AYR +I++E E+QTRTVFRTAWAPS NG PET+V  SSDGS+ASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL +G+ NTKSL  AEPHCFLQGHDGPTYDVKF+DNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPHCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           +CTDIEVPI LQGSHIEP++DLMNPQ KGPWGALSPIPENNAIAT+ Q+GSIFSAAGDSC
Sbjct: 121 DCTDIEVPIYLQGSHIEPVMDLMNPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGK+K  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID A
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDN 300
           KD++ KGHFS +RCIALDASESWLACADGRSLSVWNLPSSE +SKTLTR S+QDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEP LTRFD++GS+LSQIQCAPQSAFSVALHPS VAAVGGYGGL+DVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of Sed0022183.1 vs. ExPASy TrEMBL
Match: A0A6J1F6F8 (THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 7.7e-195
Identity = 322/370 (87.03%), Postives = 347/370 (93.78%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           ML DATNWDEDAYR ++++E EVQTRTVFRTAWAPS +G PE++VV SSDGSIASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLH G+ NTKSL  AEPHCFLQGHDGPTYDVKFFD GDNTLLLSCGDDGHIRGWRW 
Sbjct: 61  CISKLHSGYGNTKSLLAAEPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWN 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           ECTDIEVPI LQGSHIEP++DLMNPQ KGPWGALSPIPENNAIATN Q+GSIFSAAGDSC
Sbjct: 121 ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGKIK  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCK+GKCIQL+D A
Sbjct: 181 AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKTGKCIQLLDPA 240

Query: 241 KD-QQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCD 300
           KD ++QKG+FSC+RCIALDASESWLACADGRS SVWNLP+S+ +S+TLTR S+QDMVFCD
Sbjct: 241 KDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCD 300

Query: 301 NQILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGS 360
           NQILGVGAEPLLTRFD+HGSILS+IQCAPQSAFSVA+HPS VAAVGGYGGLVDVISQFGS
Sbjct: 301 NQILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGS 360

Query: 361 HLCTFCCQYR 370
           HLCTFCCQYR
Sbjct: 361 HLCTFCCQYR 370

[Close]

BLAST of Sed0022183.1 vs. ExPASy TrEMBL
Match: A0A0A0LWJ2 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G589670 PE=3 SV=1)

HSP 1 Score: 687.6 bits (1773), Expect = 2.9e-194
Identity = 318/369 (86.18%), Postives = 345/369 (93.50%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           ML DATNWDE AYR +I++E E+QTRTVFRTAWAPS NG PET+V  SSDGS+ASYSIAS
Sbjct: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL +G+ NTKSL  AEP+CFLQGHDGPTYDVKF+DNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           +CTDI+VPI LQGSHIEP++DL+NPQ KGPWGALSPIPENNAIAT+ Q+GSIFSAAGDSC
Sbjct: 121 DCTDIKVPISLQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLESGK+K  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID A
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDN 300
           KD++ KGHFS +RCIALDASESWLACADGRS+SVWNLPSSE +SKTLTR S+QDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEP LTRFD++GS+LSQIQCAPQSAFSVALHPS VAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of Sed0022183.1 vs. ExPASy TrEMBL
Match: A0A6J1D376 (THO complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016586 PE=3 SV=1)

HSP 1 Score: 682.6 bits (1760), Expect = 9.4e-193
Identity = 321/369 (86.99%), Postives = 339/369 (91.87%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSNGSPETVVVGSSDGSIASYSIAS 60
           M ADATNWDEDAYR +I +E EVQTRTVFRTAWAPS NG PET+VV SSDGSIASYSIAS
Sbjct: 1   MSADATNWDEDAYRESIFKEREVQTRTVFRTAWAPSLNGGPETIVVASSDGSIASYSIAS 60

Query: 61  CISKLHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLH+G+ N KS   AEPHCFLQGHDGP YDVKF+D+GDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLHFGYSNAKSFLAAEPHCFLQGHDGPAYDVKFYDSGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 ECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGDSC 180
           ECTDIE+PI  QGSHIEP++DL NPQ KGPWGALSPIPENNAIAT+ Q GSIFSAAGDSC
Sbjct: 121 ECTDIEMPIYFQGSHIEPVMDLTNPQYKGPWGALSPIPENNAIATDAQGGSIFSAAGDSC 180

Query: 181 AYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDQA 240
           AYCWDLES KIK  FKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQ+ID A
Sbjct: 181 AYCWDLESCKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQVIDPA 240

Query: 241 KDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFCDN 300
           KD++ KGHFSCIRCIALDASESWLACADGRSLSVWNLPSSE +SKTLTR S+QDM FCDN
Sbjct: 241 KDKKLKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSMQDMAFCDN 300

Query: 301 QILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFGSH 360
           QILG+GAEP LTRFDV+GSILSQIQCAPQSAFSVALHPS VAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGIGAEPSLTRFDVNGSILSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTF CQYR
Sbjct: 361 LCTFRCQYR 369

[Close]

BLAST of Sed0022183.1 vs. TAIR 10
Match: AT2G19430.1 (DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 )

HSP 1 Score: 460.3 bits (1183), Expect = 1.5e-129
Identity = 210/366 (57.38%), Postives = 284/366 (77.60%), Query Frame = 0


Query: 1   MLADATNWDEDAYRGTIHREIEVQTRTVFRTAWAPSSN-GSPETVVVGSSDGSIASYSIA 60
           M  DATNW+ED YR +I +E E++TRTVFRTAWAP +   +P+  VV SSDG++A +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 61  SCISK-LHYGHCNTKSLPVAEPHCFLQGHDGPTYDVKFFDNGDNTLLLSCGDDGHIRGWR 120
           S +S+   +G+   + + VAEP   ++ H+GP YDVKF+   ++ LLLSCGDDG +RGW+
Sbjct: 61  SLVSQSASFGYSKGQDVMVAEPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGWK 120

Query: 121 WRECTDIEVPIDLQGSHIEPIIDLMNPQSKGPWGALSPIPENNAIATNPQNGSIFSAAGD 180
           WRE  + +V + L+ +H++P+++L+NPQ KGPWGALSP+PE NA++ +PQ+GS+F+AAGD
Sbjct: 121 WREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAGD 180

Query: 181 SCAYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID 240
           SCAYCWD+ESGKIK TFKGHSDYLH +V+R++ +QI+TGSEDGTARIWDCK+GKC+++I 
Sbjct: 181 SCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI- 240

Query: 241 QAKDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELVSKTLTRYSIQDMVFC 300
                Q K     +  +ALD SESWL C  G++L++WNLP+SE V        +QD++F 
Sbjct: 241 ---GSQDKKSRLRVSSMALDGSESWLVCGQGKNLALWNLPASECVQTIPIPAHVQDVMFD 300

Query: 301 DNQILGVGAEPLLTRFDVHGSILSQIQCAPQSAFSVALHPSSVAAVGGYGGLVDVISQFG 360
           + QIL VGAEPLL RFD++G++LSQI CAP S FS++LHP+ V AVGGYGG+VDVISQFG
Sbjct: 301 EKQILTVGAEPLLRRFDLNGALLSQIHCAPCSVFSISLHPAGVVAVGGYGGIVDVISQFG 360

Query: 361 SHLCTF 365
           SHLCTF
Sbjct: 361 SHLCTF 362

[Close]

BLAST of Sed0022183.1 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-10
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 172 IFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSG 231
           I SA+ D     WD+E+G +  T  GH++Y  C+      N I++GS D T RIWD  +G
Sbjct: 86  IVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTG 145

Query: 232 KCIQLIDQAKD 243
           KC++++    D
Sbjct: 146 KCLKVLPAHSD 156

[Close]

BLAST of Sed0022183.1 vs. TAIR 10
Match: AT1G48630.1 (receptor for activated C kinase 1B )

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-09
Identity = 30/113 (26.55%), Postives = 52/113 (46.02%), Query Frame = 0


Query: 171 SIFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKS 230
           +I SA+ D     W+L++ K++ T  GHS YL+ +      +   +G +DG   +WD   
Sbjct: 165 TIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAE 224

Query: 231 GKCIQLIDQAKDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELV 284
           GK +  ++           S I  +    +  WL  A   S+ +W+L S  +V
Sbjct: 225 GKKLYSLEAG---------SIIHSLCFSPNRYWLCAATENSIRIWDLESKSVV 268

[Close]

BLAST of Sed0022183.1 vs. TAIR 10
Match: AT3G16650.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-08
Identity = 24/86 (27.91%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 157 IPENNAIATNPQNGSIFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIIT 216
           I +   +A + ++  +FSA  D    CWDLE  K+  ++ GH   ++C+    T++ ++T
Sbjct: 212 IGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLT 271

Query: 217 GSEDGTARIWDCKSGKCIQLIDQAKD 243
           G  D   R+WD ++   I ++    D
Sbjct: 272 GGRDSVCRVWDIRTKMQIFVLPHDSD 297

[Close]

BLAST of Sed0022183.1 vs. TAIR 10
Match: AT3G18130.1 (receptor for activated C kinase 1C )

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-08
Identity = 29/113 (25.66%), Postives = 52/113 (46.02%), Query Frame = 0


Query: 171 SIFSAAGDSCAYCWDLESGKIKTTFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKS 230
           +I SA+ D     W+L++ K++ +  GHS YL+ +      +   +G +DG   +WD   
Sbjct: 165 TIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAE 224

Query: 231 GKCIQLIDQAKDQQQKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSELV 284
           GK +  ++           S I  +    +  WL  A   S+ +W+L S  +V
Sbjct: 225 GKKLYSLEAG---------SIIHSLCFSPNRYWLCAATENSIRIWDLESKSVV 268

The following BLAST results are available for this feature:

BLAST of Sed0022183.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880261.1	1.7e-196	87.80	THO complex subunit 6 isoform X4 [Benincasa hispida] >XP_038880262.1 THO complex...	[more]
XP_008450878.1	6.4e-196	87.26	PREDICTED: THO complex subunit 6 [Cucumis melo] >KAA0055809.1 THO complex subuni...	[more]
XP_022934010.1	1.6e-194	87.03	THO complex subunit 6 [Cucurbita moschata]	[more]
XP_023531243.1	4.6e-194	86.76	THO complex subunit 6 [Cucurbita pepo subsp. pepo]	[more]
XP_004144008.1	6.0e-194	86.18	THO complex subunit 6 [Cucumis sativus] >KGN66260.1 hypothetical protein Csa_007...	[more]

BLAST of Sed0022183.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L4M1	2.1e-128	57.38	THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1	[more]
Q5XJS5	4.4e-30	27.07	THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1	[more]
Q86W42	9.2e-28	25.89	THO complex subunit 6 homolog OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1	[more]
Q5U4D9	3.5e-27	25.60	THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1	[more]
Q6AY87	3.5e-27	25.60	THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1	[more]

BLAST of Sed0022183.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQQ6	3.1e-196	87.26	THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16...	[more]
A0A1S3BQ99	3.1e-196	87.26	THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1	[more]
A0A6J1F6F8	7.7e-195	87.03	THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1	[more]
A0A0A0LWJ2	2.9e-194	86.18	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A6J1D376	9.4e-193	86.99	THO complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016586 PE=3 SV=1	[more]

BLAST of Sed0022183.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19430.1	1.5e-129	57.38	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1	[more]
AT3G49660.1	4.0e-10	38.03	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G48630.1	4.4e-09	26.55	receptor for activated C kinase 1B	[more]
AT3G16650.1	1.7e-08	27.91	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G18130.1	1.7e-08	25.66	receptor for activated C kinase 1C	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 238..276 e-value: 1.5 score: 15.8 coord: 317..355 e-value: 170.0 score: 2.9 coord: 188..227 e-value: 1.0E-6 score: 38.3 coord: 14..57 e-value: 7.0 score: 11.7 coord: 77..118 e-value: 1.2E-4 score: 31.5 coord: 147..185 e-value: 56.0 score: 6.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 191..227 e-value: 2.5E-4 score: 21.8 coord: 246..276 e-value: 0.0016 score: 19.2 coord: 84..117 e-value: 0.011 score: 16.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 195..236 score: 13.148488
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 84..117 score: 8.737287
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 155..362 e-value: 5.9E-26 score: 92.9
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 7..143 e-value: 1.4E-13 score: 52.7
IPR042626	THO complex subunit 6	PANTHER	PTHR44411	THO COMPLEX SUBUNIT 6 HOMOLOG	coord: 9..366
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 195..227 score: 10.126507
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 16..356

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022183	Sed0022183	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7373952..7374306	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7375300..7375416	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7375761..7375871	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7378591..7378703	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7379080..7379119	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7380686..7380766	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7381164..7381217	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7381289..7381349	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7383719..7383764	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7383973..7384049	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7384599..7384697	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7384825..7384850	exon
Sed0022183.1-exon	Sed0022183.1-exon-LG08:7386946..7387361	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022183.1-three_prime_utr	Sed0022183.1-three_prime_utr-LG08:7373952..7374216	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7374217..7374306	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7375300..7375416	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7375761..7375871	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7378591..7378703	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7379080..7379119	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7380686..7380766	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7381164..7381217	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7381289..7381349	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7383719..7383764	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7383973..7384049	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7384599..7384697	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7384825..7384850	CDS
Sed0022183.1-cds	Sed0022183.1-cds-LG08:7386946..7387140	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022183.1-five_prime_utr	Sed0022183.1-five_prime_utr-LG08:7387141..7387361	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022183.1	Sed0022183.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009788	negative regulation of abscisic acid-activated signaling pathway
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006413	translational initiation
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0000347	THO complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003743	translation initiation factor activity