Sed0021774.1 (mRNA) Chayote v1

Overview


Name	Sed0021774.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Duplicated homeodomain-like superfamily protein
Location	Contig00335_ERROPOS5334465: 40154 .. 41951 (+)
Sequence length	786
RNA-Seq Expression	Sed0021774.1
Synteny	Sed0021774.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAGAAACAACTTCCAATCTTCGTTTGATGCGTCGAGCATTCCACATCCCGATCCGAATCGTCCGACACCAACGGTTAACCCAAACGAGATGTCCCAATTCGATCAACTTGATCCAGTCCTTTTACGTTTCATTCAAAGGGACGACATGGAACTTCATGAGTTATTGAAGGCATTGTTATGGCCTCTAAAATCGAATGCTCATTTAAATTTTAAGCTTACACCGTCCATTATTCCAAATCTTGATCCAAATCTATATCCAATGAGGCGTATCGAGATGCCCAGATTAGGTTCGACCGAAAATGCAGTGTTTGAGCAGCCATGCACGACAATGCCTCCACCCCCGTTACCGCCACAGAATCAACCGAACGATACTGCGATTAACCGCACTGGTCTTCTTTCCGACATCGTCAATTTTTGCTCCAATAATGAAATACATCTTTCGACGGCGTCTTCGCCGAAAATTCTACTGTCGAGCAATGGAGCTGTAGCTGCGACTCAAGGCGGAGTGAACTCATCCGACAGAAAGAGTACATGGAGTCATCACGAGCACAAGTATGTAACGACTACTTTTTTAAATTGCCTACTTTTAAGTGCAAAAAATAAAGTGTTTAAGGCTAAATTTTGATTAACTGAATATTTTTAAACATTAATTTACATAAATGATTTTATTTTTTTGGTTAAAATATCATTCTCATCATAAATTTTGAAATTTATTTCTCTATATTTTTAAATATCTAAGTTTAGCTCCTAGGGTTTTAAGTTTGTTGTATGTTACTTCTTACCTTCTATTAAAAAAATTTAAAAAAAAAATCTAAACTAGACAATTTTTATGTTTTTTTTTCTTGATTTTTAAATTTATAGAATAAAACTGAATATTTAAAAATAATTCAAAGATTAAAATTAAATGACAATGATATTTTTAATTATAACTTTTATTTTTTAAATCACCAATCTAGTTCTGTAATTTTAACAAGGGTCTCCCATTTATATTTTCCTCACTTTCTACTCATTTATTAGACTATCAAAATTGAAAGTGTATATGAATGTATTTGACATTTACAAGGCGTTTGATGACCATTTCACTTTTGGTTTGTTGTTGTTTTTTTTAAAAAAAACAGGTTTGATAACCAATTTTGCCTTTTGTTTTTAAAATTTTAAAAATATTAAAGAAATTCTAAAAATTAAAAAAAAAACTTTTAAAAACAAGTTTTTGTTTTTGTTTTTAAAAAAGTATGAAAAGAATAAGAATAAATAGTAAAAAAATAAAAAAAAATCCCAACAAAATGTGATAATTGAAAACAAAAAACATGTTTAGTTATCAAACATGTTTTTTGGTTTTTCATTTTTAAAAACGTAAAACTAAAATGAGTTATCAAACATACACAGTTTTATTTTTTAAAACAAATAACCAAAAACAAAAAATGAAAAATTTTAAACAAAAAACGAAATGGTTATCAAAAGGGGCCTAATTTATCAGACACATTTGAGTTCATGAAGTTACCCATATAATTCAAGTATTTTGGAAGAAAAAAAACTAATTTTAATTTGTGATTTTGTGGCTCAGGCTACTTTTAGTAGGGATGCAGATATATGGGAAGGGTGAATGGAAGAAGATTGCAAATAATGTAGTGATTACAAAAACATATAAACAAGTGGCTAGCCATGCACAAAAATACTTTGATCACAAGGGAAAGAAGTCGAAGAGGGCGAGCATTCATGATACCGATAATGTCGATCGCAGGTTATTATCGCAGGTTCGTGCTCGGCTAGGACTATCCTATAGCCAGTGA

mRNA sequence

ATGGAGATGAGAAACAACTTCCAATCTTCGTTTGATGCGTCGAGCATTCCACATCCCGATCCGAATCGTCCGACACCAACGGTTAACCCAAACGAGATGTCCCAATTCGATCAACTTGATCCAGTCCTTTTACGTTTCATTCAAAGGGACGACATGGAACTTCATGAGTTATTGAAGGCATTGTTATGGCCTCTAAAATCGAATGCTCATTTAAATTTTAAGCTTACACCGTCCATTATTCCAAATCTTGATCCAAATCTATATCCAATGAGGCGTATCGAGATGCCCAGATTAGGTTCGACCGAAAATGCAGTGTTTGAGCAGCCATGCACGACAATGCCTCCACCCCCGTTACCGCCACAGAATCAACCGAACGATACTGCGATTAACCGCACTGGTCTTCTTTCCGACATCGTCAATTTTTGCTCCAATAATGAAATACATCTTTCGACGGCGTCTTCGCCGAAAATTCTACTGTCGAGCAATGGAGCTGTAGCTGCGACTCAAGGCGGAGTGAACTCATCCGACAGAAAGAGTACATGGAGTCATCACGAGCACAAGCTACTTTTAGTAGGGATGCAGATATATGGGAAGGGTGAATGGAAGAAGATTGCAAATAATGTAGTGATTACAAAAACATATAAACAAGTGGCTAGCCATGCACAAAAATACTTTGATCACAAGGGAAAGAAGTCGAAGAGGGCGAGCATTCATGATACCGATAATGTCGATCGCAGGTTATTATCGCAGGTTCGTGCTCGGCTAGGACTATCCTATAGCCAGTGA

Coding sequence (CDS)

ATGGAGATGAGAAACAACTTCCAATCTTCGTTTGATGCGTCGAGCATTCCACATCCCGATCCGAATCGTCCGACACCAACGGTTAACCCAAACGAGATGTCCCAATTCGATCAACTTGATCCAGTCCTTTTACGTTTCATTCAAAGGGACGACATGGAACTTCATGAGTTATTGAAGGCATTGTTATGGCCTCTAAAATCGAATGCTCATTTAAATTTTAAGCTTACACCGTCCATTATTCCAAATCTTGATCCAAATCTATATCCAATGAGGCGTATCGAGATGCCCAGATTAGGTTCGACCGAAAATGCAGTGTTTGAGCAGCCATGCACGACAATGCCTCCACCCCCGTTACCGCCACAGAATCAACCGAACGATACTGCGATTAACCGCACTGGTCTTCTTTCCGACATCGTCAATTTTTGCTCCAATAATGAAATACATCTTTCGACGGCGTCTTCGCCGAAAATTCTACTGTCGAGCAATGGAGCTGTAGCTGCGACTCAAGGCGGAGTGAACTCATCCGACAGAAAGAGTACATGGAGTCATCACGAGCACAAGCTACTTTTAGTAGGGATGCAGATATATGGGAAGGGTGAATGGAAGAAGATTGCAAATAATGTAGTGATTACAAAAACATATAAACAAGTGGCTAGCCATGCACAAAAATACTTTGATCACAAGGGAAAGAAGTCGAAGAGGGCGAGCATTCATGATACCGATAATGTCGATCGCAGGTTATTATCGCAGGTTCGTGCTCGGCTAGGACTATCCTATAGCCAGTGA

Protein sequence

MEMRNNFQSSFDASSIPHPDPNRPTPTVNPNEMSQFDQLDPVLLRFIQRDDMELHELLKALLWPLKSNAHLNFKLTPSIIPNLDPNLYPMRRIEMPRLGSTENAVFEQPCTTMPPPPLPPQNQPNDTAINRTGLLSDIVNFCSNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGKKSKRASIHDTDNVDRRLLSQVRARLGLSYSQ

Homology

[Close]

BLAST of Sed0021774.1 vs. NCBI nr
Match: XP_023522314.1 (transcription factor SRM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-20
Identity = 64/132 (48.48%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 127 TAINRTGLLSDIVNFCSNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKSTWSHHEH 186
           T +  TG LSD++NFCSNN  H        ++ ++NG V+       SS  +  W+  EH
Sbjct: 20  TPMESTGFLSDVINFCSNNTRH--------VVAANNGRVS------QSSKTRIIWTIDEH 79

Query: 187 KLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASIHDTDNV 246
           KL LVGM I+G G WK IAN VV+TKT+ QVASHAQK+   +    ++ KR SIHD D V
Sbjct: 80  KLFLVGMAIFGSGNWKSIANKVVLTKTHIQVASHAQKFSTRQQIPKEQRKRKSIHDIDTV 137

Query: 247 DRRLLSQVRARL 256
           D  LLS+V ARL
Sbjct: 140 DPELLSEVYARL 137

[Close]

BLAST of Sed0021774.1 vs. NCBI nr
Match: KAA0044592.1 (myb-like protein J [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-16
Identity = 62/131 (47.33%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 132 TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKL 191
           TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L
Sbjct: 203 TGLLSDIVKM----RPRVPTMSSSTTNLSSLPPRPPSSHNSLNIKNNNIRNYWSLKEHRL 262

Query: 192 LLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVD 251
            L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K    K KR+SIHD   V+
Sbjct: 263 FLAGMQLLGKAEWKKIADHVVITKTHKQVASHAQKYFLHLDKLSKHKRKRSSIHDITTVE 322

Query: 252 RRLLSQVRARL 256
              L++V A L
Sbjct: 323 PEFLAEVEACL 329

[Close]

BLAST of Sed0021774.1 vs. NCBI nr
Match: XP_008454484.1 (PREDICTED: myb-like protein J [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-16
Identity = 62/131 (47.33%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 132 TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKL 191
           TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L
Sbjct: 164 TGLLSDIVKM----RPRVPTMSSSTTNLSSLPPRPPSSHNSLNIKNNNIRNYWSLKEHRL 223

Query: 192 LLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVD 251
            L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K    K KR+SIHD   V+
Sbjct: 224 FLAGMQLLGKAEWKKIADHVVITKTHKQVASHAQKYFLHLDKLSKHKRKRSSIHDITTVE 283

Query: 252 RRLLSQVRARL 256
              L++V A L
Sbjct: 284 PEFLAEVEACL 290

[Close]

BLAST of Sed0021774.1 vs. NCBI nr
Match: TYK16992.1 (myb-like protein J [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-14
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 172 VNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK- 231
           + ++  ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K 
Sbjct: 31  IKNNKIRNYWSLKEHRLFLAGMQLLGKAEWKKIADHVVITKTHKQVASHAQKYFLHLDKL 90

Query: 232 ---KSKRASIHDTDNVDRRLLSQVRARL 256
              K KR+SIHD   V+   L++V A L
Sbjct: 91  SKHKRKRSSIHDITTVEPEFLAEVEACL 118

[Close]

BLAST of Sed0021774.1 vs. NCBI nr
Match: XP_011654326.2 (myb-like protein J [Cucumis sativus] >KAE8649106.1 hypothetical protein Csa_015417 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-14
Identity = 55/127 (43.31%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 132 TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLL 191
           TGLLSDI        +   + S+  +L SS+       +Q  +   +  + WS  EHKL 
Sbjct: 219 TGLLSDIPTQMIRPHVPTISLSTTNLLPSSSLPPQPLLSQNSLKIRNNSTNWSIREHKLF 278

Query: 192 LVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHKGKKSKRASIHDTDNVDRRLL 251
           L GMQ+ G+G WKKIAN VVITKT+ QVASHAQKYF      K KR SIHD    +    
Sbjct: 279 LAGMQLLGQGAWKKIANYVVITKTHTQVASHAQKYFLRQTSPKHKRTSIHDITTAEPEFF 338

Query: 252 SQVRARL 256
           +   AR+
Sbjct: 339 ALAEARI 345

[Close]

BLAST of Sed0021774.1 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-13
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 163 GAVAATQGGVNSSDRKS--TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASH 222
           G   ++ G  +  +RK    W+  EHKL L+G++ YGKG+W+ I+ N VIT+T  QVASH
Sbjct: 114 GGRKSSSGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASH 173

Query: 223 AQKYFDHK---GKKSKRASIHDTDNVD 245
           AQKYF  +   GK  +RASIHD   V+
Sbjct: 174 AQKYFIRQLSGGKDKRRASIHDITTVN 200

[Close]

BLAST of Sed0021774.1 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 167 ATQGGVNSSDRKS----TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQ 226
           + Q G + SD++      W+  EH+L L+G+  YGKG+W+ I+ N V+T+T  QVASHAQ
Sbjct: 102 SNQAGKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ 161

Query: 227 KYF---DHKGKKSKRASIHDTDNV 244
           KYF   +   K  +R+SIHD  +V
Sbjct: 162 KYFIRLNSMNKDRRRSSIHDITSV 185

[Close]

BLAST of Sed0021774.1 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 181 WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASI 240
           W+  EH+L L+G+  +GKG+W+ I+ N VI++T  QVASHAQKYF   +   +  +R+SI
Sbjct: 144 WTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSI 203

Query: 241 HDTDNV 244
           HD  +V
Sbjct: 204 HDITSV 209

[Close]

BLAST of Sed0021774.1 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 181 WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASI 240
           W+  EH+L L+G+  +GKG+W+ I+ N VI++T  QVASHAQKYF   +   +  +R+SI
Sbjct: 144 WTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSI 203

Query: 241 HDTDNV 244
           HD  +V
Sbjct: 204 HDITSV 209

[Close]

BLAST of Sed0021774.1 vs. ExPASy Swiss-Prot
Match: Q9LVS0 (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 170 GGVNSSDRK--STWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-- 229
           G  +S +RK  + W+  EH++ L+G+Q  GKG+W+ I+ N V T+T  QVASHAQKYF  
Sbjct: 85  GSSSSRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIR 144

Query: 230 -DHKGKKSKRASIHD 240
             +  ++ +R+S+ D
Sbjct: 145 QSNVSRRKRRSSLFD 159

[Close]

BLAST of Sed0021774.1 vs. ExPASy TrEMBL
Match: A0A5A7TMR3 (Myb-like protein J OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003420 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 62/131 (47.33%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 132 TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKL 191
           TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L
Sbjct: 203 TGLLSDIVKM----RPRVPTMSSSTTNLSSLPPRPPSSHNSLNIKNNNIRNYWSLKEHRL 262

Query: 192 LLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVD 251
            L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K    K KR+SIHD   V+
Sbjct: 263 FLAGMQLLGKAEWKKIADHVVITKTHKQVASHAQKYFLHLDKLSKHKRKRSSIHDITTVE 322

Query: 252 RRLLSQVRARL 256
              L++V A L
Sbjct: 323 PEFLAEVEACL 329

[Close]

BLAST of Sed0021774.1 vs. ExPASy TrEMBL
Match: A0A1S3BZH7 (myb-like protein J OS=Cucumis melo OX=3656 GN=LOC103494880 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 62/131 (47.33%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 132 TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKL 191
           TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L
Sbjct: 164 TGLLSDIVKM----RPRVPTMSSSTTNLSSLPPRPPSSHNSLNIKNNNIRNYWSLKEHRL 223

Query: 192 LLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVD 251
            L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K    K KR+SIHD   V+
Sbjct: 224 FLAGMQLLGKAEWKKIADHVVITKTHKQVASHAQKYFLHLDKLSKHKRKRSSIHDITTVE 283

Query: 252 RRLLSQVRARL 256
              L++V A L
Sbjct: 284 PEFLAEVEACL 290

[Close]

BLAST of Sed0021774.1 vs. ExPASy TrEMBL
Match: A0A5D3CZL0 (Myb-like protein J OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001340 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-15
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 172 VNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK- 231
           + ++  ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K 
Sbjct: 31  IKNNKIRNYWSLKEHRLFLAGMQLLGKAEWKKIADHVVITKTHKQVASHAQKYFLHLDKL 90

Query: 232 ---KSKRASIHDTDNVDRRLLSQVRARL 256
              K KR+SIHD   V+   L++V A L
Sbjct: 91  SKHKRKRSSIHDITTVEPEFLAEVEACL 118

[Close]

BLAST of Sed0021774.1 vs. ExPASy TrEMBL
Match: A0A0A0KYZ4 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G014580 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-14
Identity = 55/127 (43.31%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 132 TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLL 191
           TGLLSDI        +   + S+  +L SS+       +Q  +   +  + WS  EHKL 
Sbjct: 219 TGLLSDIPTQMIRPHVPTISLSTTNLLPSSSLPPQPLLSQNSLKIRNNSTNWSIREHKLF 278

Query: 192 LVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHKGKKSKRASIHDTDNVDRRLL 251
           L GMQ+ G+G WKKIAN VVITKT+ QVASHAQKYF      K KR SIHD    +    
Sbjct: 279 LAGMQLLGQGAWKKIANYVVITKTHTQVASHAQKYFLRQTSPKHKRTSIHDITTAEPEFF 338

Query: 252 SQVRARL 256
           +   AR+
Sbjct: 339 ALAEARI 345

[Close]

BLAST of Sed0021774.1 vs. ExPASy TrEMBL
Match: A0A0A0KTY5 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015160 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-14
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 132 TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLL 191
           TGLLSDI        +   + S+  +L SS+       +Q  +   +  + WS  EHKL 
Sbjct: 217 TGLLSDIPTQMIRPHVPTISLSTTNLLPSSSLPPQPLLSQNSLKIRNNSTNWSIREHKLF 276

Query: 192 LVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHKGKKSKRASIHDTDNVDRRLL 251
           L GMQ+ G+G WKKIAN VV+TKT+ QVASHAQKYF     +K KR SIHD    +    
Sbjct: 277 LAGMQLLGQGAWKKIANYVVVTKTHTQVASHAQKYFLRQTSQKHKRTSIHDITTAEPEFF 336

Query: 252 SQVRARL 256
           +   +R+
Sbjct: 337 ALAESRI 343

[Close]

BLAST of Sed0021774.1 vs. TAIR 10
Match: AT5G04760.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 7.6e-16
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 171 GVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKG- 230
           G +   R + W+ +EHKL L+G++ YGKG+W+ I+ NVV+T+T  QVASHAQKYF  +  
Sbjct: 91  GESERKRGTPWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNS 150

Query: 231 --KKSKRASIHDTDNVDRRL 248
             K+ KR+SIHD   VD  L
Sbjct: 151 VKKERKRSSIHDITTVDATL 170

[Close]

BLAST of Sed0021774.1 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-14
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 181 WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASI 240
           W+  EHKL L+G++ YGKG+W+ I+ N VIT+T  QVASHAQKYF  +   GK  +RASI
Sbjct: 143 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASI 202

Query: 241 HDTDNVD 245
           HD   V+
Sbjct: 203 HDITTVN 209

[Close]

BLAST of Sed0021774.1 vs. TAIR 10
Match: AT5G08520.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-13
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 167 ATQGGVNSSDRKS----TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQ 226
           + Q G + SD++      W+  EH+L L+G+  YGKG+W+ I+ N V+T+T  QVASHAQ
Sbjct: 102 SNQAGKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ 161

Query: 227 KYF---DHKGKKSKRASIHDTDNV 244
           KYF   +   K  +R+SIHD  +V
Sbjct: 162 KYFIRLNSMNKDRRRSSIHDITSV 185

[Close]

BLAST of Sed0021774.1 vs. TAIR 10
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 162 NGAVAATQGGVNSS-------DRKS--TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITK 221
           NG   +  GG   S       +RK    W+  EH+  L+G++ YGKG+W+ IA N V T+
Sbjct: 115 NGYYFSAAGGKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTR 174

Query: 222 TYKQVASHAQKYFDHK---GKKSKRASIHDTDNVD 245
           T  QVASHAQKYF  +   GK  +R+SIHD   V+
Sbjct: 175 TPTQVASHAQKYFIRQVNGGKDKRRSSIHDITTVN 209

[Close]

BLAST of Sed0021774.1 vs. TAIR 10
Match: AT1G49010.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-12
Identity = 40/114 (35.09%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 143 SNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKS-------TWSHHEHKLLLVGMQI 202
           +N + H S +S  K    ++G ++++ GG +   R          W+  EH+L L+G+  
Sbjct: 92  ANRDSHSSGSSEKKPNPGTSG-ISSSNGGRSGGSRAEQERRKGIPWTEEEHRLFLLGLDK 151

Query: 203 YGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNVDRR 247
           +GKG+W+ I+ N VI++T  QVASHAQKYF   +   +  +R+SIHD   V+ +
Sbjct: 152 FGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITTVNNQ 204

The following BLAST results are available for this feature:

BLAST of Sed0021774.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522314.1	1.3e-20	48.48	transcription factor SRM1-like [Cucurbita pepo subsp. pepo]	[more]
KAA0044592.1	4.2e-16	47.33	myb-like protein J [Cucumis melo var. makuwa]	[more]
XP_008454484.1	4.2e-16	47.33	PREDICTED: myb-like protein J [Cucumis melo]	[more]
TYK16992.1	1.0e-14	54.55	myb-like protein J [Cucumis melo var. makuwa]	[more]
XP_011654326.2	5.1e-14	43.31	myb-like protein J [Cucumis sativus] >KAE8649106.1 hypothetical protein Csa_0154...	[more]

BLAST of Sed0021774.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S9H7	1.6e-13	47.13	Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ...	[more]
Q9FNN6	3.8e-12	44.05	Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1	[more]
B8A9B2	2.1e-10	46.97	Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 ...	[more]
Q8LH59	2.1e-10	46.97	Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=...	[more]
Q9LVS0	1.8e-09	42.67	Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1	[more]

BLAST of Sed0021774.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TMR3	2.0e-16	47.33	Myb-like protein J OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00...	[more]
A0A1S3BZH7	2.0e-16	47.33	myb-like protein J OS=Cucumis melo OX=3656 GN=LOC103494880 PE=4 SV=1	[more]
A0A5D3CZL0	5.0e-15	54.55	Myb-like protein J OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G0...	[more]
A0A0A0KYZ4	2.5e-14	43.31	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G01458...	[more]
A0A0A0KTY5	4.2e-14	41.73	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G01516...	[more]

BLAST of Sed0021774.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04760.1	7.6e-16	50.00	Duplicated homeodomain-like superfamily protein	[more]
AT5G58900.1	2.5e-14	55.22	Homeodomain-like transcriptional regulator	[more]
AT5G08520.1	2.7e-13	44.05	Duplicated homeodomain-like superfamily protein	[more]
AT2G38090.1	1.3e-12	43.16	Duplicated homeodomain-like superfamily protein	[more]
AT1G49010.1	3.0e-12	35.09	Duplicated homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 177..227 e-value: 1.5E-6 score: 37.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 173..225 score: 7.259158
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 180..225 e-value: 5.76763E-7 score: 43.333
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 178..224 e-value: 2.8E-9 score: 37.0
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 173..229 score: 15.061535
None	No IPR available	GENE3D	1.10.10.60		coord: 179..228 e-value: 5.7E-13 score: 50.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR44191	TRANSCRIPTION FACTOR KUA1	coord: 167..245
None	No IPR available	PANTHER	PTHR44191:SF21	TRANSCRIPTION FACTOR SRM1	coord: 167..245
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 178..228 e-value: 3.2E-12 score: 44.5
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 176..228

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0021774	Sed0021774	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021774.1-exon	Sed0021774.1-exon-Contig00335_ERROPOS5334465:40154..40713	exon
Sed0021774.1-exon	Sed0021774.1-exon-Contig00335_ERROPOS5334465:41726..41951	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021774.1-cds	Sed0021774.1-cds-Contig00335_ERROPOS5334465:40154..40713	CDS
Sed0021774.1-cds	Sed0021774.1-cds-Contig00335_ERROPOS5334465:41726..41951	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0021774.1	Sed0021774.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding