Sed0020523.1 (mRNA) Chayote v1

Overview


Name	Sed0020523.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	acanthoscurrin-1-like
Location	LG09: 27863603 .. 27864284 (-)
Sequence length	682
RNA-Seq Expression	Sed0020523.1
Synteny	Sed0020523.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCTTTAAAACCCTAAGCTCACACCTCCATTGGCCAACAACACACACAAAGACAAGTGTTAAGTGTTAGTAGTAAGCAAGAAGAAAATGGCCAAAGTGTTCATAGCTTTGCTCTTGGCTCTTGTAGCCACTCATGCCGTGGCTCGACCTACGCCGAAGGACGACACCTTCACTGACCAAAAGAACTTCCTAACCTATGGTGGCGTCGGTGGCTACTCCGGCATCGGCAGCAACGGTCTCCCATTCGGTGGGCTCGGGGGTGCTGTTGGAGGAACTGGCCCTGGAGGCATTGGTGGAGGAATTGGTGGATTCACAGGCACCGGCATGGGAGGAGGCTTGGGAGGCGGCTTGGGAGGCCTCGGTGGAACCACGGCTGGCGGTCTCGGTGGCGGTCTAGGTGGCGGTCTAGGTGGCGGTCTCGGTGGCGGTCTCGGTGGCGGAGCTGGCGGTGGTTCTGGACTTCCTTAGAGAAGTTACTTAGTTATTTTTTATTTATGTATTCAAAAGTTATTGCAGTTTGAAGTTTATTATTTAAATTCGTGTCAAGAGATGTAGTGGTTAAGTTGTTGTCTAGTCAGCTTATAACATTTGGTTGTGTTTGGTTTTCTATTAAAATTTAGATATGATTATGTTTGTTTGTTCATTTTCTGAGTGAAATACAAACGTCTTTCTTTAGTGGTTT

mRNA sequence

GCCCTTTAAAACCCTAAGCTCACACCTCCATTGGCCAACAACACACACAAAGACAAGTGTTAAGTGTTAGTAGTAAGCAAGAAGAAAATGGCCAAAGTGTTCATAGCTTTGCTCTTGGCTCTTGTAGCCACTCATGCCGTGGCTCGACCTACGCCGAAGGACGACACCTTCACTGACCAAAAGAACTTCCTAACCTATGGTGGCGTCGGTGGCTACTCCGGCATCGGCAGCAACGGTCTCCCATTCGGTGGGCTCGGGGGTGCTGTTGGAGGAACTGGCCCTGGAGGCATTGGTGGAGGAATTGGTGGATTCACAGGCACCGGCATGGGAGGAGGCTTGGGAGGCGGCTTGGGAGGCCTCGGTGGAACCACGGCTGGCGGTCTCGGTGGCGGTCTAGGTGGCGGTCTAGGTGGCGGTCTCGGTGGCGGTCTCGGTGGCGGAGCTGGCGGTGGTTCTGGACTTCCTTAGAGAAGTTACTTAGTTATTTTTTATTTATGTATTCAAAAGTTATTGCAGTTTGAAGTTTATTATTTAAATTCGTGTCAAGAGATGTAGTGGTTAAGTTGTTGTCTAGTCAGCTTATAACATTTGGTTGTGTTTGGTTTTCTATTAAAATTTAGATATGATTATGTTTGTTTGTTCATTTTCTGAGTGAAATACAAACGTCTTTCTTTAGTGGTTT

Coding sequence (CDS)

ATGGCCAAAGTGTTCATAGCTTTGCTCTTGGCTCTTGTAGCCACTCATGCCGTGGCTCGACCTACGCCGAAGGACGACACCTTCACTGACCAAAAGAACTTCCTAACCTATGGTGGCGTCGGTGGCTACTCCGGCATCGGCAGCAACGGTCTCCCATTCGGTGGGCTCGGGGGTGCTGTTGGAGGAACTGGCCCTGGAGGCATTGGTGGAGGAATTGGTGGATTCACAGGCACCGGCATGGGAGGAGGCTTGGGAGGCGGCTTGGGAGGCCTCGGTGGAACCACGGCTGGCGGTCTCGGTGGCGGTCTAGGTGGCGGTCTAGGTGGCGGTCTCGGTGGCGGTCTCGGTGGCGGAGCTGGCGGTGGTTCTGGACTTCCTTAG

Protein sequence

MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAVGGTGPGGIGGGIGGFTGTGMGGGLGGGLGGLGGTTAGGLGGGLGGGLGGGLGGGLGGGAGGGSGLP

Homology

[Close]

BLAST of Sed0020523.1 vs. NCBI nr
Match: XP_022960398.1 (acanthoscurrin-1-like [Cucurbita moschata] >KAG6592858.1 hypothetical protein SDJN03_12334, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025267.1 hypothetical protein SDJN02_11762, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 110/133 (82.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+A+LLAL+ATHA+ARPTPKD TFTDQKNFLTYGG+GGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGFTGTGMGG--GLGGGL--GGLGGTTAGG-LGGGLGGGLGGGLGGGL 120
           GGTGPGGIGGGIGG  G G GG  GLGGGL  GGLGGT  GG LGGGLGG +GGGLGGGL
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGGAGLGGGLGGGGLGGTMGGGNLGGGLGGTVGGGLGGGL 120

Query: 121 GG--GAGGGSGLP 127
           GG  G GGGSGLP
Sbjct: 121 GGGVGGGGGSGLP 133

[Close]

BLAST of Sed0020523.1 vs. NCBI nr
Match: KAA0050560.1 (acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-30
Identity = 106/130 (81.54%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+ALLLALVATHA+ARPTPKDDTF+DQKNFLTYGGVGGYSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTG-PGGIGGGIGGFTGTGMG----GGLGGGLGGLGGTTAGGLGGGLGGGLGGGLGGGL 120
           GG G  GG+GGG+GG TG G G    GG GGGLGG+GGTT GGLGGGLGGGLGGGLGGGL
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTT-GGLGGGLGGGLGGGLGGGL 120

Query: 121 GGGAGGGSGL 126
           GGG GG SG+
Sbjct: 121 GGGVGGASGV 129

[Close]

BLAST of Sed0020523.1 vs. NCBI nr
Match: XP_023004890.1 (acanthoscurrin-1-like [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 7.2e-30
Identity = 108/138 (78.26%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+A+LLAL+ATHA+ARPTPKD TFTDQKNFLTYGG+GGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGF-----TGTGMGGGLGGGL------GGLGGTTAGG-LGGGLGGGLG 120
           GGTGPGGIGGGIGG       G G+GGGLGGGL      GGLGGT  GG LGGGLGG +G
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTVG 120

Query: 121 GGLGGGLGGGAGGGSGLP 127
           GGLGGG+GG  GGGSGLP
Sbjct: 121 GGLGGGVGG--GGGSGLP 136

[Close]

BLAST of Sed0020523.1 vs. NCBI nr
Match: XP_023514578.1 (acanthoscurrin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 9.4e-30
Identity = 106/130 (81.54%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+A+LLAL+ATHA+ARPTPKD TFTDQKNFLTYGG+GGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGFTGTGMGGGLGG---GLGGLGGTTAGG-LGGGLGGGLGGGLGGGLG 120
           GGTGPGGIGGGIGG  G G GGG GG   G GGLGGT  GG LGGGLGG +GGGLGGG+G
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGGAGGAGLGGGGLGGTIGGGNLGGGLGGTVGGGLGGGVG 120

Query: 121 GGAGGGSGLP 127
           G  GGGSGLP
Sbjct: 121 G--GGGSGLP 128

[Close]

BLAST of Sed0020523.1 vs. NCBI nr
Match: XP_008462124.1 (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-28
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 6   IALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAVGGTG- 65
           +ALLLALVATHA+ARPTPKDDTF+DQKNFLTYGGVGGYSGIGSNGLPFGG+GGA+GG G 
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  PGGIGGGIGGFTGTGMG----GGLGGGLGGLGGTTAGGLGGGLGGGLGGGLGGGLGGGAG 125
            GG+GGG+GG TG G G    GG GGGLGG+GGTT GGLGGGLGGGLGGGLGGGLGGG G
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTT-GGLGGGLGGGLGGGLGGGLGGGVG 120

[Close]

BLAST of Sed0020523.1 vs. ExPASy TrEMBL
Match: A0A6J1H8T3 (acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 9.1e-31
Identity = 110/133 (82.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+A+LLAL+ATHA+ARPTPKD TFTDQKNFLTYGG+GGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGFTGTGMGG--GLGGGL--GGLGGTTAGG-LGGGLGGGLGGGLGGGL 120
           GGTGPGGIGGGIGG  G G GG  GLGGGL  GGLGGT  GG LGGGLGG +GGGLGGGL
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGGAGLGGGLGGGGLGGTMGGGNLGGGLGGTVGGGLGGGL 120

Query: 121 GG--GAGGGSGLP 127
           GG  G GGGSGLP
Sbjct: 121 GGGVGGGGGSGLP 133

[Close]

BLAST of Sed0020523.1 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30
Identity = 106/130 (81.54%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+ALLLALVATHA+ARPTPKDDTF+DQKNFLTYGGVGGYSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTG-PGGIGGGIGGFTGTGMG----GGLGGGLGGLGGTTAGGLGGGLGGGLGGGLGGGL 120
           GG G  GG+GGG+GG TG G G    GG GGGLGG+GGTT GGLGGGLGGGLGGGLGGGL
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTT-GGLGGGLGGGLGGGLGGGL 120

Query: 121 GGGAGGGSGL 126
           GGG GG SG+
Sbjct: 121 GGGVGGASGV 129

[Close]

BLAST of Sed0020523.1 vs. ExPASy TrEMBL
Match: A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.5e-30
Identity = 108/138 (78.26%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+A+LLAL+ATHA+ARPTPKD TFTDQKNFLTYGG+GGYSGIGSNGLPFGGLGGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGIGGGIGGF-----TGTGMGGGLGGGL------GGLGGTTAGG-LGGGLGGGLG 120
           GGTGPGGIGGGIGG       G G+GGGLGGGL      GGLGGT  GG LGGGLGG +G
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTVG 120

Query: 121 GGLGGGLGGGAGGGSGLP 127
           GGLGGG+GG  GGGSGLP
Sbjct: 121 GGLGGGVGG--GGGSGLP 136

[Close]

BLAST of Sed0020523.1 vs. ExPASy TrEMBL
Match: A0A1S3CGR1 (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 6   IALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAVGGTG- 65
           +ALLLALVATHA+ARPTPKDDTF+DQKNFLTYGGVGGYSGIGSNGLPFGG+GGA+GG G 
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  PGGIGGGIGGFTGTGMG----GGLGGGLGGLGGTTAGGLGGGLGGGLGGGLGGGLGGGAG 125
            GG+GGG+GG TG G G    GG GGGLGG+GGTT GGLGGGLGGGLGGGLGGGLGGG G
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTT-GGLGGGLGGGLGGGLGGGLGGGVG 120

[Close]

BLAST of Sed0020523.1 vs. ExPASy TrEMBL
Match: A0A0A0K9U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAVARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLGGAV 60
           MAK+F+ALLLALVATHA+ARPTPKDDTF+DQKNFLTYGGVGGYSGIG+NGLPFGGLGGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GGTGPGGIGGGIGGFTGTGMGG--GLGGGLGGLGGTTA-----GGLGGGLGGGLGGGLGG 120
           GG   GG+GGG+GG  G G+GG  G+GGGLGGLGG        GG  GGLGGGLGGGLGG
Sbjct: 61  GG---GGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGGLGGGLGGGLGG 120

Query: 121 GLGGGAGGGSGL 126
           GLGGG GG SG+
Sbjct: 121 GLGGGVGGASGV 129

[Close]

BLAST of Sed0020523.1 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 69/129 (53.49%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 1   MAKVFIALLLALVATHAV---ARPTPKDDTFTDQKNFLTYGGVGGYSGIGSNGLPFGGLG 60
           MAK F  + L      A+   AR  P     +DQKN+L YG  GGYSG+G NGLPFGG+G
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVPVG--LSDQKNYLGYG--GGYSGVGDNGLPFGGVG 60

Query: 61  GAVGGTGPGGIGGGIGGFTGTGMGGGLGGGLGGLGGTTAGGLGGGLGGGLGGGLGGGLGG 120
           G V  +GPGG   G GGF G   GGGLGGGLGG  G+   GLGGGLGG  G G+G G  G
Sbjct: 61  GGV--SGPGG-NLGYGGFGGA--GGGLGGGLGGGAGS---GLGGGLGG--GSGIGAGTSG 115

Query: 121 GAGGGSGLP 127
           G+ GG   P
Sbjct: 121 GSTGGVHFP 115

The following BLAST results are available for this feature:

BLAST of Sed0020523.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960398.1	1.9e-30	82.71	acanthoscurrin-1-like [Cucurbita moschata] >KAG6592858.1 hypothetical protein SD...	[more]
KAA0050560.1	2.5e-30	81.54	acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-li...	[more]
XP_023004890.1	7.2e-30	78.26	acanthoscurrin-1-like [Cucurbita maxima]	[more]
XP_023514578.1	9.4e-30	81.54	acanthoscurrin-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008462124.1	3.9e-28	81.60	PREDICTED: acanthoscurrin-1-like [Cucumis melo]	[more]

BLAST of Sed0020523.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020523.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8T3	9.1e-31	82.71	acanthoscurrin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461135 PE=4 SV=1	[more]
A0A5A7U5T7	1.2e-30	81.54	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]
A0A6J1KVV3	3.5e-30	78.26	acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1	[more]
A0A1S3CGR1	1.9e-28	81.60	acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1	[more]
A0A0A0K9U1	2.1e-27	76.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1	[more]

BLAST of Sed0020523.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	1.1e-04	53.49	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..122

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0020523	Sed0020523	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020523.1-exon	Sed0020523.1-exon-LG09:27863603..27864284	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020523.1-three_prime_utr	Sed0020523.1-three_prime_utr-LG09:27863603..27863816	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020523.1-cds	Sed0020523.1-cds-LG09:27863817..27864197	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020523.1-five_prime_utr	Sed0020523.1-five_prime_utr-LG09:27864198..27864284	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0020523.1	Sed0020523.1-protein	polypeptide