Sed0019842.1 (mRNA) Chayote v1

Overview


Name	Sed0019842.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RNA-binding protein pno1
Location	LG03: 8523680 .. 8524294 (+)
Sequence length	615
RNA-Seq Expression	Sed0019842.1
Synteny	Sed0019842.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATCAACAGAAGTATCCACTTCCATGGAAGTGGCTACAGTTTCAGCTCACCCGAAAGCTGTAGCTAGCACATTGCCACCAAAACCACACTTTGACTCTCTCAAACATCACTATAGTCGAGTTCAGTTCCGAAAGGTCTCTGTCCCTTTGCATCGATATTCTCCGCTCAAGAAAGCATGGATGGAGATTTACTCCCTAGTTTACGAGTCGATGAAAATTGACATTCGAATGAATCTCGAGGCACGTAGAGTTGAACTGAAAACCAGAGCAGACACACCTTCTGATATCAGTAACTTGCAAAAGTGTGCAGATTTTATTAATGCCTTCATGCTGGGGTTTGATGTGATCGATGCCATTACACTCTTAATGGTGGATGAACTCTATGTGGAGTCTTTTGAGATTAAAGATGTTGTCCAAACCCTGCGAGGCAAGCAGTTGTCTCGTGCCATAGGAAGATTGTCTGGCAAAGCTGGGAAGACGAAGTTCGCCATCGAGACTAGGATAGTTATTGCAGACACCAAAATTCACATATTAGGAACCCTTGCTAATATCAAAATTGCAAGGGATTCTCTTTGCAGCCTCATTTTAGGGTCCCCTGCAGGAAAAGTATAG

mRNA sequence

ATGCTATCAACAGAAGTATCCACTTCCATGGAAGTGGCTACAGTTTCAGCTCACCCGAAAGCTGTAGCTAGCACATTGCCACCAAAACCACACTTTGACTCTCTCAAACATCACTATAGTCGAGTTCAGTTCCGAAAGGTCTCTGTCCCTTTGCATCGATATTCTCCGCTCAAGAAAGCATGGATGGAGATTTACTCCCTAGTTTACGAGTCGATGAAAATTGACATTCGAATGAATCTCGAGGCACGTAGAGTTGAACTGAAAACCAGAGCAGACACACCTTCTGATATCAGTAACTTGCAAAAGTGTGCAGATTTTATTAATGCCTTCATGCTGGGGTTTGATGTGATCGATGCCATTACACTCTTAATGGTGGATGAACTCTATGTGGAGTCTTTTGAGATTAAAGATGTTGTCCAAACCCTGCGAGGCAAGCAGTTGTCTCGTGCCATAGGAAGATTGTCTGGCAAAGCTGGGAAGACGAAGTTCGCCATCGAGACTAGGATAGTTATTGCAGACACCAAAATTCACATATTAGGAACCCTTGCTAATATCAAAATTGCAAGGGATTCTCTTTGCAGCCTCATTTTAGGGTCCCCTGCAGGAAAAGTATAG

Coding sequence (CDS)

ATGCTATCAACAGAAGTATCCACTTCCATGGAAGTGGCTACAGTTTCAGCTCACCCGAAAGCTGTAGCTAGCACATTGCCACCAAAACCACACTTTGACTCTCTCAAACATCACTATAGTCGAGTTCAGTTCCGAAAGGTCTCTGTCCCTTTGCATCGATATTCTCCGCTCAAGAAAGCATGGATGGAGATTTACTCCCTAGTTTACGAGTCGATGAAAATTGACATTCGAATGAATCTCGAGGCACGTAGAGTTGAACTGAAAACCAGAGCAGACACACCTTCTGATATCAGTAACTTGCAAAAGTGTGCAGATTTTATTAATGCCTTCATGCTGGGGTTTGATGTGATCGATGCCATTACACTCTTAATGGTGGATGAACTCTATGTGGAGTCTTTTGAGATTAAAGATGTTGTCCAAACCCTGCGAGGCAAGCAGTTGTCTCGTGCCATAGGAAGATTGTCTGGCAAAGCTGGGAAGACGAAGTTCGCCATCGAGACTAGGATAGTTATTGCAGACACCAAAATTCACATATTAGGAACCCTTGCTAATATCAAAATTGCAAGGGATTCTCTTTGCAGCCTCATTTTAGGGTCCCCTGCAGGAAAAGTATAG

Protein sequence

MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHYSRVQFRKVSVPLHRYSPLKKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVIDAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIETRIVIADTKIHILGTLANIKIARDSLCSLILGSPAGKV

Homology

[Close]

BLAST of Sed0019842.1 vs. NCBI nr
Match: XP_022951370.1 (RNA-binding protein pno1-like isoform X1 [Cucurbita moschata] >XP_022951376.1 RNA-binding protein pno1-like isoform X1 [Cucurbita moschata] >KAG7028303.1 RNA-binding protein pno1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 173/211 (81.99%), Postives = 184/211 (87.20%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV  VS+ PK V STLPPKPHFD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSTEASTSMEVEAVSSQPKPVVSTLPPKPHFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +YE MKIDIRMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DA+ LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAVALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. NCBI nr
Match: XP_023005535.1 (RNA-binding protein pno1-like isoform X1 [Cucurbita maxima] >XP_023005536.1 RNA-binding protein pno1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 174/211 (82.46%), Postives = 183/211 (86.73%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV  VS  PK V STLPPKPHFD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSTEASTSMEVEAVSTQPKPVVSTLPPKPHFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +YE MKIDIRMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. NCBI nr
Match: XP_023540523.1 (RNA-binding protein pno1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540524.1 RNA-binding protein pno1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 173/211 (81.99%), Postives = 183/211 (86.73%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV  VS  PK V STLPPKPHFD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSTEASTSMEVEAVSTQPKPVVSTLPPKPHFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +YE MKID+RMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYEQMKIDLRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. NCBI nr
Match: XP_022932417.1 (RNA-binding protein pno1 [Cucurbita moschata])

HSP 1 Score: 307.4 bits (786), Expect = 9.4e-80
Identity = 171/211 (81.04%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV TVS   K V STLPPKP FD LK H     R+QFRKVSVP HRY+PL
Sbjct: 1   MQSTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +YE MKIDIRMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. NCBI nr
Match: XP_008449001.1 (PREDICTED: RNA-binding protein pno1 [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-79
Identity = 170/211 (80.57%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV T+S   K V STLPPKP FD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSTEASTSMEVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +Y+ MKID+RMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. ExPASy Swiss-Prot
Match: Q9VR89 (RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.9e-47
Identity = 101/169 (59.76%), Postives = 134/169 (79.29%), Query Frame = 0


Query: 40  SRVQFRKVSVPLHRYSPLKKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISN 99
           +R + RKVSVP HRYS LK+ WM+I++ V E MK+ IR N++AR+VEL+   +TP DI+N
Sbjct: 59  ARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETP-DIAN 118

Query: 100 LQKCADFINAFMLGFDVIDAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAG 159
           LQ+ ADF+ AF+ GF+V DA+ LL +++L+VESFEIKD V+TLRG   SRAIGRL+GK G
Sbjct: 119 LQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKD-VKTLRGDHQSRAIGRLAGKGG 178

Query: 160 KTKFAIE----TRIVIADTKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           +TKF IE    TRIV+AD+KIHILG+  NI++AR ++C+LILGSP  KV
Sbjct: 179 RTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKV 225

[Close]

BLAST of Sed0019842.1 vs. ExPASy Swiss-Prot
Match: Q29IG6 (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46
Identity = 100/166 (60.24%), Postives = 132/166 (79.52%), Query Frame = 0


Query: 43  QFRKVSVPLHRYSPLKKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQK 102
           + RKVSVP HRYS LK+ WM+I++ V E MK+ IR N++AR+VEL+   +TP DI+NLQK
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETP-DIANLQK 119

Query: 103 CADFINAFMLGFDVIDAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTK 162
            ADF+ AF+ GF+V DA+ LL +++L+VE+FEIKD V+TLRG   SRAIGRL+GK G+TK
Sbjct: 120 GADFVKAFLCGFEVDDALALLRLEDLFVETFEIKD-VKTLRGDHQSRAIGRLAGKGGRTK 179

Query: 163 FAIE----TRIVIADTKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           F IE    TRIV+AD+KIHILG+  NI++AR ++C+LILGSP  KV
Sbjct: 180 FTIENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKV 223

[Close]

BLAST of Sed0019842.1 vs. ExPASy Swiss-Prot
Match: Q6VBQ6 (RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.0e-45
Identity = 97/182 (53.30%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 29  KPHFDSLKHHYSR--VQFRKVSVPLHRYSPLKKAWMEIYSLVYESMKIDIRMNLEARRVE 88
           +PHF  +     R   + RKV+VP HRY+PLK+ W++I++ + E++++ +R NL+ R VE
Sbjct: 49  RPHFPPISADKLRGPDEMRKVAVPAHRYTPLKENWLKIFTPIVENLQLQVRFNLKTRNVE 108

Query: 89  LKTRADTPSDISNLQKCADFINAFMLGFDVIDAITLLMVDELYVESFEIKDVVQTLRGKQ 148
           +KT  +T  DI+ L K ADFI AF+LGF V DA+ L+ +DEL++ESF++ D V+ L+G  
Sbjct: 109 IKTCKET-QDIAALTKAADFIKAFVLGFQVDDAMALIRLDELFLESFDVTD-VKPLKGDH 168

Query: 149 LSRAIGRLSGKAGKTKFAIE----TRIVIADTKIHILGTLANIKIARDSLCSLILGSPAG 205
           LSRAIGR++GK GKTKF IE    TRIV+ADTKIHILG+  NIK+AR ++C+LILGSP  
Sbjct: 169 LSRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMARTAICNLILGSPPS 228

[Close]

BLAST of Sed0019842.1 vs. ExPASy Swiss-Prot
Match: Q5ACM4 (Pre-rRNA-processing protein PNO1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PNO1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.8e-45
Identity = 102/182 (56.04%), Postives = 133/182 (73.08%), Query Frame = 0


Query: 29  KPHFDSLKHHYSRVQF--RKVSVPLHRYSPLKKAWMEIYSLVYESMKIDIRMNLEARRVE 88
           KP F +      +V+   RKV+VP HR +PLK  W +IY  + E +K+ +RMNL+ + VE
Sbjct: 82  KPKFSAASKSNMKVKLESRKVAVPPHRMTPLKNVWSKIYPPLVEHLKLQVRMNLKTKTVE 141

Query: 89  LKTRADTPSDISNLQKCADFINAFMLGFDVIDAITLLMVDELYVESFEIKDVVQTLRGKQ 148
           L+T   T +D+  LQK ADF+ AF LGFDV DAI LL +D+LY+E+FEIKD V+TL G  
Sbjct: 142 LRTNKYT-TDVGALQKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEIKD-VKTLTGDH 201

Query: 149 LSRAIGRLSGKAGKTKFAIE----TRIVIADTKIHILGTLANIKIARDSLCSLILGSPAG 205
           LSRAIGR++GK GKTKFAIE    TRIV+AD+KIHILG   +I++AR+++ SLILGSP G
Sbjct: 202 LSRAIGRIAGKDGKTKFAIENATRTRIVLADSKIHILGGFTHIRMAREAVVSLILGSPPG 261

[Close]

BLAST of Sed0019842.1 vs. ExPASy Swiss-Prot
Match: Q1DQZ5 (Pre-rRNA-processing protein PNO1 OS=Coccidioides immitis (strain RS) OX=246410 GN=PNO1 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-44
Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 0


Query: 41  RVQFRKVSVPLHRYSPLKKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNL 100
           R++ RKV VP HR SPLK AW +IY  + E +K+ +RMN++++ VEL+T  +T +D   L
Sbjct: 75  RIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQVRMNIKSKAVELRTSKNT-TDTGAL 134

Query: 101 QKCADFINAFMLGFDVIDAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGK 160
           QK  DFI AF LGFDV DAI LL +D+LY+E+FEIKD V+ L G+ L RAIGR++GK GK
Sbjct: 135 QKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKD-VKPLNGEHLGRAIGRIAGKDGK 194

Query: 161 TKFAIE----TRIVIADTKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKFAIE    TR+V+AD KIHILG   NI+IAR+++ SLILGSP GKV
Sbjct: 195 TKFAIENASRTRVVLADQKIHILGGFRNIRIAREAIVSLILGSPPGKV 240

[Close]

BLAST of Sed0019842.1 vs. ExPASy TrEMBL
Match: A0A6J1KXN9 (RNA-binding protein pno1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498497 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.3e-82
Identity = 174/211 (82.46%), Postives = 183/211 (86.73%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV  VS  PK V STLPPKPHFD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSTEASTSMEVEAVSTQPKPVVSTLPPKPHFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +YE MKIDIRMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. ExPASy TrEMBL
Match: A0A6J1GHF0 (RNA-binding protein pno1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454213 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.3e-82
Identity = 173/211 (81.99%), Postives = 184/211 (87.20%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV  VS+ PK V STLPPKPHFD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSTEASTSMEVEAVSSQPKPVVSTLPPKPHFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +YE MKIDIRMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DA+ LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAVALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. ExPASy TrEMBL
Match: A0A6J1EWL7 (RNA-binding protein pno1 OS=Cucurbita moschata OX=3662 GN=LOC111438772 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.5e-80
Identity = 171/211 (81.04%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV TVS   K V STLPPKP FD LK H     R+QFRKVSVP HRY+PL
Sbjct: 1   MQSTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +YE MKIDIRMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. ExPASy TrEMBL
Match: A0A1S3BLP2 (RNA-binding protein pno1 OS=Cucumis melo OX=3656 GN=LOC103491005 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.9e-80
Identity = 170/211 (80.57%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M STE STSMEV T+S   K V STLPPKP FD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSTEASTSMEVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KKAWMEIY+ +Y+ MKID+RMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. ExPASy TrEMBL
Match: A0A6J1CNV4 (RNA-binding protein pno1 OS=Momordica charantia OX=3673 GN=LOC111013333 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.8e-79
Identity = 171/211 (81.04%), Postives = 180/211 (85.31%), Query Frame = 0


Query: 1   MLSTEVSTSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPL 60
           M S EVSTSMEV  VS   KAV   LPPKP FD LK H     RVQFRKVSVP HRYSPL
Sbjct: 1   MQSIEVSTSMEVEAVSTESKAVVGALPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVI 120
           KK+WMEIY+ VYE MKIDIRMNL+AR+VELKTRADTP DISNLQKCADF++AFMLGFDVI
Sbjct: 61  KKSWMEIYTPVYEQMKIDIRMNLKARKVELKTRADTP-DISNLQKCADFVHAFMLGFDVI 120

Query: 121 DAITLLMVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIAD 180
           DAI LL VDELYVESFEIKD V+TLRG+ LSRAIGRLSGKAGKTKFAIE    TRIVIAD
Sbjct: 121 DAIALLRVDELYVESFEIKD-VKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIAD 180

Query: 181 TKIHILGTLANIKIARDSLCSLILGSPAGKV 205
           TKIHILG+ ANIKIARDSLCSLILGSPAGKV
Sbjct: 181 TKIHILGSFANIKIARDSLCSLILGSPAGKV 209

[Close]

BLAST of Sed0019842.1 vs. TAIR 10
Match: AT3G13230.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 256.1 bits (653), Expect = 2.3e-68
Identity = 142/205 (69.27%), Postives = 167/205 (81.46%), Query Frame = 0


Query: 7   STSMEVATVSAHPKAVASTLPPKPHFDSLKHHY---SRVQFRKVSVPLHRYSPLKKAWME 66
           ST MEV T +         LPPKP F  LK H     +VQFRK++VP +RYSPLKKAW++
Sbjct: 4   STQMEVETATEG----TVPLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLD 63

Query: 67  IYSLVYESMKIDIRMNLEARRVELKTRADTPSDISNLQKCADFINAFMLGFDVIDAITLL 126
           IY+ +Y+ MK+DIRMNL+AR+VELKTRADTP DISNLQK ADF++AFMLGFD+ DAI+LL
Sbjct: 64  IYTPIYDQMKVDIRMNLKARKVELKTRADTP-DISNLQKSADFVHAFMLGFDIPDAISLL 123

Query: 127 MVDELYVESFEIKDVVQTLRGKQLSRAIGRLSGKAGKTKFAIE----TRIVIADTKIHIL 186
            +DELYVESFEIKD V+TL+G+ LSRAIGRLSGK GKTKFAIE    TRIVIADT+IHIL
Sbjct: 124 RMDELYVESFEIKD-VKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHIL 183

Query: 187 GTLANIKIARDSLCSLILGSPAGKV 205
           G  +NIK+AR SLCSLI+GSPAGKV
Sbjct: 184 GAFSNIKVARSSLCSLIMGSPAGKV 202

The following BLAST results are available for this feature:

BLAST of Sed0019842.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951370.1	1.3e-81	81.99	RNA-binding protein pno1-like isoform X1 [Cucurbita moschata] >XP_022951376.1 RN...	[more]
XP_023005535.1	1.3e-81	82.46	RNA-binding protein pno1-like isoform X1 [Cucurbita maxima] >XP_023005536.1 RNA-...	[more]
XP_023540523.1	2.2e-81	81.99	RNA-binding protein pno1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540...	[more]
XP_022932417.1	9.4e-80	81.04	RNA-binding protein pno1 [Cucurbita moschata]	[more]
XP_008449001.1	1.2e-79	80.57	PREDICTED: RNA-binding protein pno1 [Cucumis melo]	[more]

BLAST of Sed0019842.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VR89	4.9e-47	59.76	RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV...	[more]
Q29IG6	1.1e-46	60.24	RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l...	[more]
Q6VBQ6	6.0e-45	53.30	RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1	[more]
Q5ACM4	7.8e-45	56.04	Pre-rRNA-processing protein PNO1 OS=Candida albicans (strain SC5314 / ATCC MYA-2...	[more]
Q1DQZ5	1.7e-44	58.93	Pre-rRNA-processing protein PNO1 OS=Coccidioides immitis (strain RS) OX=246410 G...	[more]

BLAST of Sed0019842.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXN9	6.3e-82	82.46	RNA-binding protein pno1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GHF0	6.3e-82	81.99	RNA-binding protein pno1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1EWL7	4.5e-80	81.04	RNA-binding protein pno1 OS=Cucurbita moschata OX=3662 GN=LOC111438772 PE=3 SV=1	[more]
A0A1S3BLP2	5.9e-80	80.57	RNA-binding protein pno1 OS=Cucumis melo OX=3656 GN=LOC103491005 PE=3 SV=1	[more]
A0A6J1CNV4	3.8e-79	81.04	RNA-binding protein pno1 OS=Momordica charantia OX=3673 GN=LOC111013333 PE=3 SV=...	[more]

BLAST of Sed0019842.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13230.1	2.3e-68	69.27	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 126..204 e-value: 3.3E-13 score: 51.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 127..203
None	No IPR available	PANTHER	PTHR12826	RIBONUCLEASE Y	coord: 9..204
IPR039912	Pre-rRNA-processing protein PNO1-like	PANTHER	PTHR12826:SF13	RNA-BINDING PROTEIN PNO1	coord: 9..204

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0019842	Sed0019842	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019842.1-exon	Sed0019842.1-exon-LG03:8523680..8524294	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0019842.1-cds	Sed0019842.1-cds-LG03:8523680..8524294	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0019842.1	Sed0019842.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding